Experiment set40IT079 for Pseudomonas putida KT2440

Compare to:

P. putida South MOI 10

200 most important genes:

  gene name fitness t score description  
PP_0834 -6.0 -2.5 Sec translocation complex subunit YajC compare
PP_3627 -5.9 -5.4 conserved protein of unknown function compare
PP_0948 -5.6 -1.3 Phosphocarrier protein HPr compare
PP_1627 -5.5 -10.9 conserved protein of unknown function compare
PP_0962 -5.5 -3.1 toluene-tolerance protein compare
PP_1800 -5.3 -6.4 Oxidoreductase Rmd compare
PP_4874 -5.3 -2.5 50S ribosomal protein L9 compare
PP_0949 -5.3 -3.6 putative ATP-binding protein UPF0042 compare
PP_4099 -5.3 -25.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1355 -5.2 -10.5 Muropeptide permease AmpG compare
PP_1650 -4.9 -20.8 Sensor protein GacS compare
PP_4726 -4.8 -2.8 Chaperone protein DnaJ compare
PP_1799 -4.8 -11.5 GDP-mannose 4,6-dehydratase compare
PP_0789 -4.6 -4.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2299 -4.6 -3.1 Trigger factor compare
PP_3110 -4.4 -2.3 protein of unknown function compare
PP_1215 -4.4 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4891 -4.3 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1802 -4.3 -17.3 glycosyl transferase compare
PP_1764 -4.1 -2.8 Phosphoglycolate phosphatase 2 compare
PP_0405 -4.1 -10.5 conserved protein of unknown function compare
PP_0960 -4.1 -6.2 phospholipid ABC transporter binding protein compare
PP_0801 -4.1 -1.4 conserved exported protein of unknown function compare
PP_5283 -4.1 -7.6 periplasmic dipeptide transport protein compare
PP_4936 -4.0 -8.0 O-antigen polymerase compare
PP_1801 -4.0 -8.9 Glycosyl transferase WbpY compare
PP_2107 -4.0 -1.3 conserved protein of unknown function compare
PP_2163 -3.9 -7.4 VacJ lipoprotein compare
PP_1780 -3.9 -18.7 putative mannosyltransferase compare
PP_1293 -3.9 -1.3 molybdopterin synthase small subunit compare
PP_5114 -3.9 -3.0 putative adenine methyltransferase compare
PP_0540 -3.8 -5.7 conserved inner membrane protein compare
PP_1742 -3.8 -3.2 conserved inner membrane protein of unknown function compare
PP_0435 -3.7 -7.1 Peptidase, M23/M37 family compare
PP_0406 -3.7 -2.6 Nucleotidyltransferase family protein compare
PP_1237 -3.6 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1702 -3.6 -2.5 Recombination-associated protein RdgC compare
PP_5146 -3.6 -7.4 RNA pyrophosphohydrolase compare
PP_1804 -3.6 -9.5 Glycosyl transferase WbpL compare
PP_1776 -3.5 -11.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5557 -3.5 -2.1 protein of unknown function compare
PP_2148 -3.4 -9.8 transcription-repair coupling factor compare
PP_1789 -3.4 -3.6 Hydrolase, haloacid dehalogenase-like family compare
PP_1805 -3.4 -12.6 Polysaccharide biosynthesis protein compare
PP_1803 -3.3 -8.3 UDP-sugar epimerase compare
PP_0434 -3.3 -4.1 Anhydro-N-acetylmuramic acid kinase compare
PP_5279 -3.1 -3.9 conserved protein of unknown function compare
PP_1777 -3.1 -10.9 phosphomannomutase compare
PP_1663 -3.0 -4.8 conserved exported protein of unknown function compare
PP_0961 -3.0 -5.1 toluene tolerance protein compare
PP_1097 -3.0 -1.0 Methionine--tRNA ligase compare
PP_1268 -3.0 -2.7 putative HtrA suppressor protein sohA compare
PP_1075 -3.0 -6.8 glycerol kinase compare
PP_0630 -3.0 -1.2 DNA gyrase inhibitor YacG compare
PP_0937 -2.9 -4.3 endoribonuclease G (RNAse G) compare
PP_1655 -2.9 -6.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1632 -2.9 -1.3 conserved protein of unknown function compare
PP_0066 -2.9 -4.9 Ribosomal RNA small subunit methyltransferase B compare
PP_4964 -2.8 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0401 -2.8 -3.1 Ribosomal RNA small subunit methyltransferase A compare
PP_5145 -2.8 -12.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1871 -2.7 -3.9 Protease HtpX compare
PP_4938 -2.7 -5.5 putative Glycosyl transferase compare
PP_4517 -2.7 -1.7 conserved protein of unknown function compare
PP_0833 -2.6 -1.7 queuine tRNA-ribosyltransferase compare
PP_5055 -2.6 -2.5 Sulfurtransferase compare
PP_5548 -2.5 -1.5 protein of unknown function compare
PP_2378 -2.5 -3.1 Fe/S biogenesis protein NfuA compare
PP_1122 -2.5 -1.6 OmpA family protein compare
PP_4223 -2.5 -2.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2145 -2.5 -3.1 beta-N-acetylglucosaminidase compare
PP_1309 -2.4 -4.3 conserved exported protein of unknown function compare
PP_4570 -2.4 -6.3 conserved protein of unknown function compare
PP_t49 -2.4 -3.0 tRNA-Met compare
PP_2655 -2.4 -2.2 conserved protein of unknown function compare
PP_2899 -2.3 -1.3 conserved exported protein of unknown function compare
PP_2633 -2.3 -1.2 conserved protein of unknown function compare
PP_4004 -2.2 -2.9 DNA translocase FtsK compare
PP_4892 -2.2 -5.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4379 -2.2 -3.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2029 -2.2 -1.8 von Willebrand factor type A domain protein compare
PP_5090 -2.2 -1.6 putative cell division protein compare
PP_1774 -2.1 -1.4 conserved exported protein of unknown function compare
PP_1076 -2.1 -3.9 aquaglyceroporin compare
PP_0627 -2.1 -1.6 conserved protein of unknown function compare
PP_0958 -2.1 -4.0 phospholipid ABC transporter ATP-binding subunit compare
PP_4171 -2.0 -11.1 conserved exported protein of unknown function compare
PP_5705 -2.0 -1.5 protein of unknown function compare
PP_1778 -2.0 -3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1775 -2.0 -2.9 Metallo-beta-lactamase family protein compare
PP_1731 -2.0 -2.9 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4515 -2.0 -4.5 Transcriptional regulator, MarR family compare
PP_5278 -2.0 -2.6 4-guanidinobutyraldehyde dehydrogenase compare
PP_1055 -1.9 -1.1 Type II secretion pathway protein GspN compare
PP_2253 -1.9 -1.0 Transcriptional regulator, GntR family compare
PP_0888 -1.9 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_1326 -1.9 -1.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5717 -1.8 -2.0 conserved protein of unknown function compare
PP_1779 -1.8 -4.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1598 -1.8 -2.7 regulatory intramembrane protein RIP zinc protease compare
PP_1218 -1.8 -2.0 putative acyl-CoA thioesterase compare
PP_1214 -1.8 -2.0 putative transcriptional regulatory protein compare
PP_0117 -1.8 -3.0 Zn(2+) ABC transporter - permease subunit compare
PP_1554 -1.8 -1.5 conserved protein of unknown function compare
PP_1232 -1.8 -3.9 conserved exported protein of unknown function compare
PP_4066 -1.7 -2.1 methylglutaconyl-CoA hydratase compare
PP_2345 -1.7 -1.7 conserved exported protein of unknown function compare
PP_4720 -1.7 -1.2 putative RNA binding protein compare
PP_0126 -1.7 -2.3 Cytochrome c4 compare
PP_1798 -1.7 -4.8 Outer membrane efflux protein compare
PP_2070 -1.7 -1.0 Transcriptional regulator, AraC family compare
PP_3819 -1.7 -4.6 glutathione reductase (NADPH) compare
PP_1468 -1.7 -1.1 Tyrosine recombinase XerD compare
PP_2764 -1.7 -1.9 FMN reductase (NADPH) compare
PP_5284 -1.7 -4.2 UPF0758 protein PP_5284 compare
PP_1898 -1.7 -1.5 MotA/TolQ/ExbB proton channel family protein compare
PP_1635 -1.6 -0.8 DNA-binding response regulator compare
PP_0809 -1.6 -3.7 disulfide bond formation protein B compare
PP_4471 -1.6 -3.7 Magnesium transporter compare
PP_1918 -1.6 -5.9 septation protein compare
PP_2124 -1.6 -2.4 putative Glycosyl transferase compare
PP_5168 -1.6 -2.1 sulfate/thiosulfate import ATP-binding protein compare
PP_1128 -1.6 -2.3 OmpA family protein compare
PP_4143 -1.6 -1.6 conserved protein of unknown function compare
PP_4895 -1.6 -2.5 tRNA dimethylallyltransferase compare
PP_1770 -1.5 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4008 -1.5 -3.8 ATP-dependent serine protease compare
PP_1654 -1.5 -1.0 cysteine synthase B compare
PP_1176 -1.5 -1.1 conserved protein of unknown function compare
PP_0393 -1.5 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5095 -1.5 -0.7 pyrroline-5-carboxylate reductase compare
PP_2894 -1.5 -2.6 conserved protein of unknown function compare
PP_0850 -1.4 -2.8 Dual-specificity RNA methyltransferase RlmN compare
PP_5100 -1.4 -1.8 dITP/XTP pyrophosphatase compare
PP_3926 -1.4 -1.1 short-chain dehydrogenase compare
PP_2032 -1.4 -2.0 putative ATPase compare
PP_1186 -1.4 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_2403 -1.4 -1.0 Chemotaxis protein CheY compare
PP_5083 -1.4 -0.9 putative Type IV pili biogenesis protein PilM compare
PP_5439 -1.4 -3.3 conserved protein of unknown function compare
PP_2969 -1.4 -2.3 putative repressor of copper utilisation proteins compare
PP_5227 -1.4 -3.1 diaminopimelate decarboxylase compare
PP_4993 -1.4 -2.7 Glutathione synthetase compare
PP_4910 -1.4 -1.2 conserved protein of unknown function compare
PP_4317 -1.4 -1.9 conserved protein of unknown function compare
PP_0872 -1.4 -3.5 Peptide chain release factor 3 compare
PP_1310 -1.4 -0.9 conserved hypothetical protein compare
PP_2402 -1.4 -1.3 putative Sensor histidine kinase compare
PP_0293 -1.3 -1.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1783 -1.3 -0.9 dTDP-glucose pyrophosphorylase compare
PP_0290 -1.3 -2.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2322 -1.3 -1.6 Major outer membrane lipoprotein compare
PP_2340 -1.3 -2.1 conserved protein of unknown function compare
PP_3539 -1.3 -1.1 putative Transcriptional regulator compare
PP_5101 -1.3 -3.1 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_5241 -1.3 -1.6 DNA-binding response regulator, LuxR family compare
PP_0566 -1.3 -1.0 translation-related factor compare
PP_4098 -1.3 -1.2 UvrABC system protein C compare
PP_1521 -1.3 -1.4 conserved protein of unknown function compare
PP_1656 -1.3 -3.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_1999 -1.2 -0.9 membrane protein required for colicin V production compare
PP_1676 -1.2 -1.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2028 -1.2 -1.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5675 -1.2 -2.3 conserved protein of unknown function compare
PP_4561 -1.2 -0.8 stress response protein compare
PP_1265 -1.2 -1.7 conserved protein of unknown function compare
PP_1734 -1.2 -1.6 Probable septum site-determining protein MinC compare
PP_5270 -1.2 -3.1 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_2309 -1.2 -0.8 conserved protein of unknown function compare
PP_0128 -1.2 -3.0 conserved protein of unknown function compare
PP_0346 -1.2 -3.5 putative Heptose kinase WapQ compare
PP_5216 -1.2 -1.3 exopolyphosphatase compare
PP_5475 -1.2 -0.7 conserved protein of unknown function compare
PP_5310 -1.2 -2.7 junction-specific ATP-dependent DNA helicase compare
PP_2737 -1.2 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3902 -1.2 -1.0 conserved protein of unknown function compare
PP_0083 -1.2 -2.9 tryptophan synthase beta chain compare
PP_4994 -1.2 -1.6 conserved protein of unknown function compare
PP_2525 -1.1 -2.0 conserved protein of unknown function compare
PP_3769 -1.1 -2.7 conserved exported protein of unknown function compare
PP_1691 -1.1 -1.4 conserved protein of unknown function compare
PP_4944 -1.1 -1.5 Carbamoyltransferase compare
PP_4133 -1.1 -1.1 Transcriptional regulator-related protein compare
PP_2291 -1.1 -2.1 conserved protein of unknown function compare
PP_5456 -1.1 -0.8 conserved protein of unknown function compare
PP_3524 -1.1 -2.1 conserved protein of unknown function compare
PP_2002 -1.1 -1.8 putative enzyme compare
PP_4217 -1.1 -6.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4793 -1.1 -1.5 conserved protein of unknown function compare
PP_2923 -1.1 -1.6 conserved protein of unknown function compare
PP_1909 -1.1 -1.7 putative septum formation protein compare
PP_1513 -1.1 -0.7 Ribosomal RNA small subunit methyltransferase J compare
PP_1455 -1.1 -1.8 conserved protein of unknown function compare
PP_2132 -1.1 -2.2 Universal stress protein compare
PP_1626 -1.1 -2.8 DNA mismatch repair protein MutS compare
PP_5329 -1.1 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4564 -1.1 -2.1 putative Lipoprotein compare
PP_1824 -1.1 -0.9 Smr domain protein compare
PP_1782 -1.1 -2.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
PP_0152 -1.1 -1.3 conserved exported protein of unknown function compare


Specific Phenotypes

For 13 genes in this experiment