Experiment set40IT078 for Pseudomonas putida KT2440

Compare to:

P. putida Missley MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_2750 -6.3 -2.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3164 -5.8 -3.0 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3481 -5.8 -2.3 conserved exported protein of unknown function compare
PP_4910 -5.3 -2.7 conserved protein of unknown function compare
PP_0630 -5.1 -1.2 DNA gyrase inhibitor YacG compare
PP_1999 -5.0 -2.0 membrane protein required for colicin V production compare
PP_1176 -5.0 -2.0 conserved protein of unknown function compare
PP_2903 -5.0 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2716 -4.9 -3.0 arsenate reductase compare
PP_2720 -4.6 -1.1 conserved protein of unknown function compare
PP_4593 -4.6 -1.5 conserved protein of unknown function compare
PP_5073 -4.5 -1.5 conserved exported protein of unknown function compare
PP_3307 -4.4 -1.5 conserved protein of unknown function compare
PP_5017 -4.4 -1.0 Sec-independent protein translocase protein TatB compare
PP_3318 -4.4 -1.5 conserved protein of unknown function compare
PP_5583 -4.1 -1.4 conserved protein of unknown function compare
PP_0610 -4.1 -3.4 conserved exported protein of unknown function compare
PP_2899 -4.1 -1.3 conserved exported protein of unknown function compare
PP_3392 -4.0 -1.3 conserved protein of unknown function compare
PP_4701 -4.0 -0.9 glucose-6-phosphate isomerase compare
PP_2681 -3.9 -1.3 coenzyme PQQ synthesis protein D compare
PP_4199 -3.9 -0.9 putative Lipoprotein compare
PP_5471 -3.9 -1.2 putative response regulator receiver protein compare
PP_2631 -3.8 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1293 -3.7 -1.2 molybdopterin synthase small subunit compare
PP_2121 -3.5 -2.4 putative Lipoprotein compare
PP_3411 -3.5 -1.1 conserved protein of unknown function compare
PP_2027 -3.4 -5.3 conserved exported protein of unknown function compare
PP_3247 -3.3 -2.4 Transporter, bile acid/Na+ symporter family compare
PP_1054 -3.2 -2.0 Type II secretion pathway protein XcpZ compare
PP_3256 -3.2 -3.7 Glycosyl transferase, group 2 family protein compare
PP_4828 -3.1 -1.0 Precorrin-8X methylmutase compare
PP_1410 -3.1 -1.2 conserved protein of unknown function compare
PP_5328 -3.0 -2.1 putative phosphate transport system permease protein compare
PP_5500 -3.0 -2.1 protein of unknown function compare
PP_4129 -2.9 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2370 -2.9 -2.3 conserved protein of unknown function compare
PP_4159 -2.9 -2.3 Potassium-transporting ATPase C chain compare
PP_1906 -2.9 -2.5 ribosomal large subunit pseudouridine synthase C compare
PP_4793 -2.8 -1.9 conserved protein of unknown function compare
PP_3505 -2.8 -1.9 conserved protein of unknown function compare
PP_2337 -2.7 -2.6 aconitate isomerase compare
PP_1734 -2.7 -1.8 Probable septum site-determining protein MinC compare
PP_4301 -2.6 -2.7 Pyruvate kinase compare
PP_5702 -2.6 -2.2 conserved protein of unknown function compare
PP_1986 -2.6 -2.5 3-isopropylmalate dehydratase small subunit compare
PP_3637 -2.6 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1781 -2.4 -8.1 putative O-acyltransferase compare
PP_3460 -2.4 -1.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2815 -2.3 -3.2 conserved protein of unknown function compare
PP_3048 -2.3 -1.3 conserved protein of unknown function compare
PP_4365 -2.3 -2.3 Flagellar protein FliJ compare
PP_5083 -2.2 -2.5 putative Type IV pili biogenesis protein PilM compare
PP_2684 -2.2 -2.4 conserved membrane protein of unknown function compare
PP_0846 -2.2 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_2341 -2.2 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4697 -2.2 -3.3 poly(A) polymerase compare
PP_4332 -2.1 -2.1 Chemotaxis protein CheW compare
PP_5008 -2.1 -1.2 Poly granule-associated protein compare
PP_0775 -2.1 -2.0 conserved protein of unknown function compare
PP_0377 -2.1 -1.5 coenzyme PQQ synthesis protein D compare
PP_2593 -2.0 -2.5 Ferric siderophore ABC transporter, permease protein compare
PP_2433 -2.0 -1.7 conserved protein of unknown function compare
PP_3192 -2.0 -2.5 conserved protein of unknown function compare
PP_2771 -2.0 -2.9 Sigma-54 dependent transcriptional regulator compare
PP_2764 -1.9 -1.8 FMN reductase (NADPH) compare
PP_5317 -1.9 -1.9 Probable chorismate pyruvate-lyase compare
PP_1000 -1.9 -3.0 ornithine carbamoyltransferase, catabolic compare
PP_4645 -1.9 -2.3 Large-conductance mechanosensitive channel compare
PP_4700 -1.9 -1.3 pantothenate synthetase compare
PP_1635 -1.9 -1.1 DNA-binding response regulator compare
PP_1912 -1.9 -3.4 Phosphate acyltransferase compare
PP_3197 -1.9 -2.1 Glyoxalase family protein compare
PP_3892 -1.9 -1.1 conserved protein of unknown function compare
PP_2864 -1.9 -1.3 conserved protein of unknown function compare
PP_3064 -1.9 -1.1 Phage tail protein compare
PP_3506 -1.9 -1.7 Magnesium chelatase, subunit ChII compare
PP_4981 -1.8 -1.8 polyisoprene-binding protein, acidic stress response factor compare
PP_1892 -1.8 -1.7 conserved protein of unknown function compare
PP_3052 -1.8 -0.9 conserved protein of unknown function compare
PP_2880 -1.8 -1.5 Transcriptional regulator, TetR family compare
PP_2958 -1.8 -1.5 Glutaredoxin compare
PP_1763 -1.8 -2.2 putative oxidoreductase compare
PP_2842 -1.8 -2.3 urease accessory protein compare
PP_2002 -1.8 -2.4 putative enzyme compare
PP_1521 -1.8 -1.5 conserved protein of unknown function compare
PP_2127 -1.8 -1.6 Sensor histidine kinase compare
PP_1005 -1.7 -2.3 Heme oxygenase compare
PP_5001 -1.7 -1.7 protease HslVU, ATPase component compare
PP_1679 -1.7 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0801 -1.7 -1.1 conserved exported protein of unknown function compare
PP_4126 -1.7 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_3749 -1.6 -2.6 conserved protein of unknown function compare
PP_5279 -1.6 -1.6 conserved protein of unknown function compare
PP_0893 -1.6 -1.7 ThiJ/PfpI family protein compare
PP_2355 -1.6 -1.9 Response regulator receiver protein compare
PP_2126 -1.6 -2.0 DNA-binding response regulator, LuxR family compare
PP_1207 -1.6 -2.2 conserved protein of unknown function compare
PP_2655 -1.6 -1.0 conserved protein of unknown function compare
PP_2725 -1.6 -1.4 Protease PfpI compare
PP_1571 -1.6 -1.8 conserved protein of unknown function compare
PP_0235 -1.6 -2.3 Peroxidase compare
PP_1748 -1.6 -1.8 conserved protein of unknown function compare
PP_3047 -1.5 -4.2 conserved protein of unknown function compare
PP_3239 -1.5 -1.4 putative cointegrate resolution protein T Tn4652 compare
PP_2340 -1.5 -2.3 conserved protein of unknown function compare
PP_3000 -1.5 -1.4 MaoC domain protein compare
PP_4980 -1.5 -3.8 ATP-dependent RNA helicase compare
PP_0065 -1.5 -2.3 NAD-binding component of TrK potassium transporter compare
PP_5499 -1.5 -1.7 conserved protein of unknown function compare
PP_0086 -1.5 -1.1 conserved protein of unknown function compare
PP_0719 -1.5 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2136 -1.5 -2.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1898 -1.5 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4247 -1.5 -1.1 Exonuclease compare
PP_0711 -1.5 -1.4 putative hydrolase compare
PP_4540 -1.5 -3.2 Hydrolase, alpha/beta fold family compare
PP_3096 -1.5 -3.9 conserved protein of unknown function compare
PP_4929 -1.5 -1.7 Transcriptional regulator, LysR family compare
PP_5600 -1.5 -0.9 conserved protein of unknown function compare
PP_4370 -1.5 -2.7 Flagellar hook-basal body complex protein FliE compare
PP_0393 -1.5 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4317 -1.5 -2.3 conserved protein of unknown function compare
PP_5274 -1.5 -0.9 conserved protein of unknown function compare
PP_2848 -1.5 -1.3 urease accessory protein compare
PP_1994 -1.5 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_2160 -1.4 -2.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1674 -1.4 -2.0 5,6-dimethylbenzimidazole synthase compare
PP_1438 -1.4 -2.0 response regulator compare
PP_5313 -1.4 -1.3 DNA-binding protein HU-alpha compare
PP_5110 -1.4 -1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4073 -1.4 -1.4 conserved exported protein of unknown function compare
PP_1676 -1.4 -2.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2041 -1.4 -2.2 Transcriptional regulator, LysR family compare
PP_1733 -1.4 -1.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_0941 -1.4 -2.7 putative ribosome associated protein compare
PP_3738 -1.4 -2.2 putative Transcriptional regulator VanR compare
PP_3587 -1.4 -2.1 lipid hydroperoxide peroxidase compare
PP_5084 -1.4 -4.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0978 -1.4 -1.5 conserved protein of unknown function compare
PP_2475 -1.3 -2.4 Transcriptional regulator, TetR family compare
PP_4254 -1.3 -1.0 conserved protein of unknown function compare
PP_2336 -1.3 -2.6 aconitate hydratase 1 compare
PP_2752 -1.3 -2.1 conserved exported protein of unknown function compare
PP_4387 -1.3 -1.0 conserved exported protein of unknown function compare
PP_3336 -1.3 -1.3 conserved protein of unknown function compare
PP_2574 -1.3 -2.0 Transcriptional regulator, LysR family compare
PP_2828 -1.3 -1.6 conserved protein of unknown function compare
PP_1562 -1.3 -1.0 putative Phage terminase, small subunit compare
PP_4389 -1.3 -2.9 Flagellar basal-body rod modification protein FlgD compare
PP_3287 -1.3 -1.8 transcriptional regulator with 4Fe-4S cluster; Crp/Fnr family compare
PP_3447 -1.3 -0.9 conserved membrane protein of unknown function compare
PP_3331 -1.3 -2.3 conserved membrane protein of unknown function compare
PP_4366 -1.3 -4.5 flagellum-specific ATP synthase compare
PP_3732 -1.3 -2.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_4354 -1.3 -1.2 flagellar export apparatus subunit compare
PP_2759 -1.3 -1.0 ribose ABC transporter - ATP-binding subunit compare
PP_3278 -1.3 -1.9 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit compare
PP_3276 -1.3 -1.2 ring 1,2-phenylacetyl-CoA epoxidase beta subunit compare
PP_5241 -1.3 -1.6 DNA-binding response regulator, LuxR family compare
PP_0217 -1.3 -2.6 delta-9 fatty acid desaturase compare
PP_5552 -1.3 -0.8 conserved protein of unknown function compare
PP_2373 -1.3 -1.0 conserved protein of unknown function compare
PP_4383 -1.3 -2.0 Flagellar P-ring protein compare
PP_1666 -1.2 -3.1 conserved exported protein of unknown function compare
PP_4569 -1.2 -1.5 conserved protein of unknown function compare
PP_2557 -1.2 -1.6 Sensory box protein compare
PP_3705 -1.2 -1.7 conserved membrane protein of unknown function compare
PP_0258 -1.2 -2.4 regulator of murein cross-linking compare
PP_2790 -1.2 -3.0 Sigma-54 dependent sensory box protein compare
PP_2605 -1.2 -2.7 conserved protein of unknown function compare
PP_3495 -1.2 -2.2 tRNA (adenine(22)-N(1))-methyltransferase compare
PP_3378 -1.2 -1.0 putative 2-ketogluconokinase compare
PP_5597 -1.2 -1.1 conserved protein of unknown function compare
PP_3312 -1.2 -0.9 putative Heat shock protein compare
PP_4859 -1.2 -1.2 Transcriptional regulator, TetR family compare
PP_3474 -1.2 -1.6 putative Curli fiber protein CsgE compare
PP_2836 -1.2 -1.1 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_3136 -1.2 -2.2 putative O-acetyltransferase compare
PP_0872 -1.2 -2.8 Peptide chain release factor 3 compare
PP_2946 -1.2 -1.9 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_1673 -1.2 -2.1 cobyrinate a,c-diamide synthase compare
PP_4197 -1.2 -3.6 Transcriptional regulator, GntR family compare
PP_3926 -1.2 -0.9 short-chain dehydrogenase compare
PP_2535 -1.2 -1.7 putative inner membrane transport protein compare
PP_4056 -1.2 -2.7 putative phosphohydrolase of unknown function compare
PP_2718 -1.2 -1.0 arsenic resistance transcriptional regulator compare
PP_1026 -1.2 -1.3 Peptidase, M23/M37 family compare
PP_3043 -1.2 -0.7 conserved protein of unknown function compare
PP_3290 -1.2 -1.5 Universal stress protein family compare
PP_3343 -1.2 -2.1 nickel ABC transporter permease subunit compare
PP_4778 -1.2 -2.7 23S rRNA pseudouridine 2457 synthase compare
PP_4832 -1.1 -1.5 Precorrin-6x reductase compare
PP_2572 -1.1 -1.3 conserved protein of unknown function compare
PP_1066 -1.1 -1.6 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4773 -1.1 -1.8 conserved protein of unknown function compare
PP_2397 -1.1 -1.8 EF hand domain protein compare
PP_1070 -1.1 -2.1 glutamate / aspartate ABC transporter - permease subunit compare
PP_2020 -1.1 -2.3 putative Lipoprotein compare
PP_4180 -1.1 -1.5 conserved protein of unknown function compare


Specific Phenotypes

For 22 genes in this experiment