Experiment set40IT078 for Pseudomonas putida KT2440
P. putida Missley MOI 0.1
Group: phageMedia: LB_plus_SM_buffer + Kan (50 ug/ml)
Culturing: Putida_ML5, 48 well microplate; Epoch2, Aerobic, at 30 (C), shaken=double orbital, continuous, 205cpm
By: Vivek on 1/12/23
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 22 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Tryptophan metabolism
- Benzoate degradation via CoA ligation
- Fatty acid metabolism
- Ubiquinone and menaquinone biosynthesis
- Purine metabolism
- Lysine degradation
- Histidine metabolism
- Phenylalanine metabolism
- gamma-Hexachlorocyclohexane degradation
- Bisphenol A degradation
- Cyanoamino acid metabolism
- Lipopolysaccharide biosynthesis
- Toluene and xylene degradation
- 1- and 2-Methylnaphthalene degradation
- Naphthalene and anthracene degradation
- 1,4-Dichlorobenzene degradation
- Styrene degradation
- Methane metabolism
- Folate biosynthesis
- Limonene and pinene degradation
- Brassinosteroid biosynthesis
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Isoflavonoid biosynthesis
- Alkaloid biosynthesis I
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| vanillin and vanillate degradation II | 2 | 2 | 1 |
| L-lysine degradation IV | 5 | 5 | 1 |
| L-lysine degradation X | 6 | 5 | 1 |
| superpathway of L-lysine degradation | 43 | 23 | 1 |