| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +4.9 | 16.5 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +4.0 | 36.1 | glycine dehydrogenase (NCBI) | compare |
| b2951 | yggS | +3.7 | 20.4 | predicted enzyme (NCBI) | compare |
| b1830 | prc | +3.6 | 19.1 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b2905 | gcvT | +3.5 | 20.3 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2572 | rseA | +3.4 | 6.1 | anti-sigma factor (NCBI) | compare |
| b3163 | nlpI | +3.4 | 15.1 | hypothetical protein (NCBI) | compare |
| b3784 | rfe | +2.8 | 24.5 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3405 | ompR | +2.8 | 13.2 | osmolarity response regulator (NCBI) | compare |
| b2829 | ptsP | +2.8 | 20.6 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3620 | rfaF | +2.7 | 18.6 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3911 | cpxA | +2.7 | 17.4 | two-component sensor protein (NCBI) | compare |
| b3621 | rfaC | +2.7 | 15.4 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b0222 | lpcA | +2.6 | 7.0 | phosphoheptose isomerase (NCBI) | compare |
| b3052 | rfaE | +2.6 | 11.8 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3787 | rffD | +2.6 | 21.5 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1677 | lpp | +2.5 | 9.0 | murein lipoprotein (NCBI) | compare |
| b3786 | rffE | +2.5 | 21.0 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3472 | b3472 | +2.4 | 21.0 | orf, hypothetical protein (VIMSS) | compare |
| b3794 | rffM | +2.4 | 17.7 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2017 | yefM | +2.3 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b3206 | npr | +2.3 | 14.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0053 | surA | +2.3 | 13.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b0178 | hlpA | +2.3 | 12.7 | periplasmic chaperone (NCBI) | compare |
| b2808 | gcvA | +2.3 | 7.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3082 | ygjM | +2.3 | 4.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4042 | dgkA | +2.2 | 6.0 | diacylglycerol kinase (NCBI) | compare |
| b3021 | ygiT | +2.1 | 6.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3619 | rfaD | +2.1 | 10.3 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3341 | rpsG | +2.1 | 4.7 | 30S ribosomal protein S7 (NCBI) | compare |
| b3529 | yhjK | +2.0 | 15.3 | predicted diguanylate cyclase (RefSeq) | compare |
| b3655 | yicH | +2.0 | 17.0 | hypothetical protein (NCBI) | compare |
| b3164 | pnp | +2.0 | 5.5 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1575 | dicB | +1.9 | 4.7 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4203 | rplI | +1.8 | 8.5 | 50S ribosomal protein L9 (NCBI) | compare |
| b3791 | rffA | +1.7 | 10.7 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0232 | yafN | +1.7 | 2.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3785 | wzzE | +1.7 | 11.2 | putative transport protein (VIMSS) | compare |
| b0059 | hepA | +1.7 | 14.5 | ATP-dependent helicase HepA (NCBI) | compare |
| b3842 | rfaH | +1.7 | 6.5 | transcriptional activator RfaH (NCBI) | compare |
| b4481 | rffT | +1.6 | 9.1 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b2144 | sanA | +1.6 | 11.7 | hypothetical protein (NCBI) | compare |
| b3630 | rfaP | +1.6 | 12.6 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b0092 | ddlB | +1.6 | 11.1 | D-alanylalanine synthetase (NCBI) | compare |
| b3199 | yrbK | +1.6 | 3.9 | hypothetical protein (NCBI) | compare |
| b3753 | rbsR | +1.6 | 12.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b4702 | mgtL | +1.6 | 1.7 | regulatory leader peptide for mgtA (NCBI) | compare |
| b0957 | ompA | +1.5 | 6.6 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b0437 | clpP | +1.5 | 6.1 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b3643 | rph | +1.5 | 4.8 | ribonuclease PH (NCBI) | compare |
| b3790 | rffC | +1.5 | 6.4 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b1667 | ydhR | +1.5 | 3.5 | hypothetical protein (NCBI) | compare |
| b1709 | btuD | +1.5 | 1.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b3631 | rfaG | +1.5 | 12.2 | glucosyltransferase I (NCBI) | compare |
| b3261 | fis | +1.4 | 4.6 | DNA-binding protein Fis (NCBI) | compare |
| b0632 | dacA | +1.4 | 7.7 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b2894 | xerD | +1.4 | 1.8 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b4202 | rpsR | +1.4 | 2.1 | 30S ribosomal protein S18 (NCBI) | compare |
| b2830 | nudH | +1.4 | 2.0 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b4410 | ecnA | +1.4 | 2.1 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b2912 | ygfA | +1.3 | 3.1 | putative ligase (VIMSS) | compare |
| b3977 | tyrU | +1.3 | 1.6 | tRNA-Tyr (NCBI) | compare |
| b1095 | fabF | +1.3 | 7.1 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2742 | nlpD | +1.3 | 7.4 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3229 | sspA | +1.3 | 3.3 | stringent starvation protein A (NCBI) | compare |
| b0858 | ybjO | +1.3 | 2.7 | predicted inner membrane protein (NCBI) | compare |
| b0627 | tatE | +1.3 | 3.4 | twin arginine translocase protein E (NCBI) | compare |
| b2688 | gshA | +1.3 | 6.2 | glutamate--cysteine ligase (NCBI) | compare |
| b2494 | yfgC | +1.2 | 6.4 | predicted peptidase (NCBI) | compare |
| b3627 | rfaI | +1.2 | 7.5 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b0438 | clpX | +1.2 | 5.7 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3181 | greA | +1.1 | 7.7 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4535 | yniD | +1.1 | 1.2 | predicted protein (RefSeq) | compare |
| b4169 | amiB | +1.1 | 7.7 | N-acetylmuramoyl-l-alanine amidase II (NCBI) | compare |
| b0998 | torD | +1.1 | 1.3 | chaperone protein TorD (NCBI) | compare |
| b1630 | rsxD | +1.1 | 3.8 | electron transport complex protein RnfD (NCBI) | compare |
| b2947 | gshB | +1.1 | 3.7 | glutathione synthetase (NCBI) | compare |
| b2516 | yfgA | +1.1 | 5.4 | hypothetical protein (NCBI) | compare |
| b0688 | pgm | +1.1 | 3.3 | phosphoglucomutase (NCBI) | compare |
| b4172 | hfq | +1.1 | 1.8 | RNA-binding protein Hfq (NCBI) | compare |
| b4592 | yccB | +1.1 | 2.6 | hypothetical protein (RefSeq) | compare |
| b3150 | yraP | +1.1 | 5.2 | hypothetical protein (NCBI) | compare |
| b3404 | envZ | +1.1 | 6.4 | osmolarity sensor protein (NCBI) | compare |
| b1824 | yobF | +1.1 | 2.5 | hypothetical protein (NCBI) | compare |
| b4609 | ryfD | +1.1 | 2.8 | Novel sRNA, function unknown (RefSeq) | compare |
| b2258 | b2258 | +1.0 | 1.3 | putative transport/receptor protein (VIMSS) | compare |
| b2614 | grpE | +1.0 | 1.5 | heat shock protein (NCBI) | compare |
| b3778 | rep | +1.0 | 5.8 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1855 | lpxM | +1.0 | 3.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4000 | hupA | +1.0 | 3.3 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0791 | ybhQ | +1.0 | 3.0 | predicted inner membrane protein (NCBI) | compare |
| b2635 | ypjK | +1.0 | 3.2 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0683 | fur | +1.0 | 0.9 | ferric uptake regulator (NCBI) | compare |
| b2512 | yfgL | +1.0 | 5.1 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1609 | rstB | +1.0 | 3.5 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b4505 | insX | +1.0 | 1.0 | predicted IS protein (RefSeq) | compare |
| b1190 | dadX | +1.0 | 4.4 | alanine racemase (NCBI) | compare |
| b4438 | cyaR | +0.9 | 1.8 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1446 | ydcY | +0.9 | 2.1 | hypothetical protein (NCBI) | compare |
| b1222 | narX | +0.9 | 4.0 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0852 | rimK | +0.9 | 5.6 | ribosomal protein S6 modification protein (NCBI) | compare |
| b2141 | yohJ | +0.9 | 1.5 | hypothetical protein (NCBI) | compare |
| b4174 | hflK | +0.9 | 5.5 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1434 | ydcN | +0.9 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1573 | ydfC | +0.9 | 1.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b4012 | yjaB | +0.9 | 2.8 | predicted acetyltransferase (NCBI) | compare |
| b3979 | thrT | +0.9 | 0.4 | tRNA-Thr (NCBI) | compare |
| b1150 | ymfR | +0.9 | 0.9 | e14 prophage; predicted protein (NCBI) | compare |
| b1685 | ydiH | +0.9 | 1.5 | predicted protein (RefSeq) | compare |
| b0695 | kdpD | +0.9 | 3.5 | fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) | compare |
| b4135 | yjdC | +0.9 | 4.8 | orf, hypothetical protein (VIMSS) | compare |
| b4375 | prfC | +0.8 | 3.1 | peptide chain release factor 3 (NCBI) | compare |
| b1013 | ycdC | +0.8 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1271 | yciK | +0.8 | 1.8 | short chain dehydrogenase (NCBI) | compare |
| b3632 | rfaQ | +0.8 | 6.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2480 | bcp | +0.8 | 3.5 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b0226 | dinJ | +0.8 | 2.6 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0953 | rmf | +0.8 | 1.4 | ribosome modulation factor (NCBI) | compare |
| b1891 | flhC | +0.8 | 2.4 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b2291 | yfbR | +0.8 | 3.2 | hypothetical protein (NCBI) | compare |
| b1400 | paaY | +0.8 | 1.1 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b4294 | insA-7 | +0.8 | 1.7 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b3789 | rffH | +0.8 | 4.8 | glucose-1-phosphate thymidylyltransferase (NCBI) | compare |
| b2317 | dedA | +0.8 | 2.7 | conserved inner membrane protein (NCBI) | compare |
| b3806 | cyaA | +0.8 | 3.4 | adenylate cyclase (NCBI) | compare |
| b1412 | azoR | +0.8 | 1.8 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b4450 | arcZ | +0.8 | 2.3 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b2817 | b2817 | +0.8 | 3.7 | putative amidase (VIMSS) | compare |
| b4163 | glyV | +0.8 | 1.2 | tRNA-Gly (NCBI) | compare |
| b1448 | yncA | +0.8 | 1.8 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1294 | sapA | +0.8 | 4.0 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1651 | gloA | +0.8 | 1.8 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b1299 | puuR | +0.8 | 1.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0082 | mraW | +0.8 | 2.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1524 | yneH | +0.8 | 0.7 | predicted glutaminase (NCBI) | compare |
| b2209 | eco | +0.8 | 1.0 | ecotin precursor (NCBI) | compare |
| b4373 | rimI | +0.8 | 2.1 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b0728 | sucC | +0.8 | 3.5 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b0866 | ybjQ | +0.8 | 0.9 | hypothetical protein (NCBI) | compare |
| b0882 | clpA | +0.7 | 4.7 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b2259 | pmrD | +0.7 | 0.8 | polymyxin resistance protein B (VIMSS) | compare |
| b1348 | lar | +0.7 | 1.8 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b3102 | yqjG | +0.7 | 2.3 | predicted S-transferase (NCBI) | compare |
| b3198 | kdsC | +0.7 | 1.8 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2455 | eutE | +0.7 | 2.2 | predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI) | compare |
| b0423 | thiI | +0.7 | 3.1 | thiamine biosynthesis protein ThiI (NCBI) | compare |
| b1926 | fliT | +0.7 | 2.7 | predicted chaperone (NCBI) | compare |
| b2352 | yfdI | +0.7 | 1.0 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b2743 | pcm | +0.7 | 2.6 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b4413 | sokC | +0.7 | 1.1 | regulatory antisense RNA (NCBI) | compare |
| b1640 | ydhH | +0.7 | 3.4 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b3388 | damX | +0.7 | 5.6 | hypothetical protein (NCBI) | compare |
| b4221 | ytfN | +0.7 | 6.0 | hypothetical protein (NCBI) | compare |
| b0686 | ybfF | +0.7 | 3.7 | hypothetical protein (NCBI) | compare |
| b1441 | ydcT | +0.7 | 2.2 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1841 | yobA | +0.7 | 1.2 | hypothetical protein (NCBI) | compare |
| b2962 | yggX | +0.7 | 2.3 | hypothetical protein (NCBI) | compare |
| b1426 | ydcH | +0.7 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0405 | queA | +0.7 | 3.7 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | compare |
| b2659 | b2659 | +0.7 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0502 | ylbG | +0.7 | 0.8 | no description | compare |
| b1507 | hipA | +0.7 | 1.9 | regulator with hipB (NCBI) | compare |
| b3351 | kefG | +0.7 | 3.9 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b0853 | ybjN | +0.7 | 1.5 | predicted oxidoreductase (NCBI) | compare |
| b0193 | yaeF | +0.7 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b1415 | aldA | +0.7 | 2.3 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b0729 | sucD | +0.7 | 1.7 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b0949 | uup | +0.7 | 3.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3761 | trpT | +0.7 | 1.0 | tRNA-Trp (NCBI) | compare |
| b4522 | yciX_1 | +0.7 | 1.5 | hypothetical protein (NCBI) | compare |
| b1421 | trg | +0.7 | 3.0 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b3387 | dam | +0.7 | 4.6 | DNA adenine methylase (NCBI) | compare |
| b3929 | rraA | +0.7 | 3.3 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1300 | puuC | +0.7 | 2.0 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | compare |
| b2052 | fcl | +0.7 | 2.6 | bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) | compare |
| b2066 | udk | +0.7 | 1.8 | uridine/cytidine kinase (VIMSS) | compare |
| b2711 | norW | +0.7 | 3.1 | nitric oxide reductase (NCBI) | compare |
| b2992 | hybE | +0.7 | 2.8 | hydrogenase 2-specific chaperone (NCBI) | compare |
| b1514 | lsrC | +0.6 | 1.1 | AI2 transporter (NCBI) | compare |
| b1556 | b1556 | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3035 | tolC | +0.6 | 3.3 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b1301 | puuB | +0.6 | 2.4 | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | compare |
| b2539 | hcaF | +0.6 | 2.7 | 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI) | compare |
| b0296 | ykgM | +0.6 | 1.7 | 50S ribosomal protein L31 (NCBI) | compare |
| b2297 | pta | +0.6 | 0.4 | phosphate acetyltransferase (NCBI) | compare |
| b3869 | glnL | +0.6 | 3.4 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | compare |
| b4646 | yrdE | +0.6 | 2.2 | no description | compare |
| b4220 | ytfM | +0.6 | 4.6 | predicted outer membrane protein and surface antigen (NCBI) | compare |
| b1074 | flgC | +0.6 | 1.5 | flagellar basal-body rod protein C (NCBI) | compare |
| b4293 | fecI | +0.6 | 2.2 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b1129 | phoQ | +0.6 | 1.3 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1884 | cheR | +0.6 | 2.8 | chemotaxis regulator, protein-glutamate methyltransferase (NCBI) | compare |
| b2457 | cchA | +0.6 | 1.6 | detox protein (VIMSS) | compare |
| b1632 | rsxE | +0.6 | 3.0 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b1629 | rsxC | +0.6 | 3.0 | electron transport complex protein RnfC (NCBI) | compare |
| b1757 | b1757 | +0.6 | 2.3 | putative thiosulfate sulfur transferase (VIMSS) | compare |
| b0249 | ykfF | +0.6 | 1.1 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b3494 | yhiO | +0.6 | 4.2 | universal stress protein UspB (NCBI) | compare |
| b1650 | nemA | +0.6 | 1.6 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b4141 | yjeH | +0.6 | 3.9 | predicted transporter (NCBI) | compare |