Experiment set40IT066 for Pseudomonas putida KT2440

Compare to:

No phage control

200 most important genes:

  gene name fitness t score description  
PP_0719 -2.4 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4098 -1.9 -3.0 UvrABC system protein C compare
PP_4379 -1.7 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5095 -1.7 -1.1 pyrroline-5-carboxylate reductase compare
PP_0691 -1.5 -1.4 Glutamate 5-kinase compare
PP_4126 -1.5 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_4122 -1.5 -2.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1468 -1.4 -3.0 Tyrosine recombinase XerD compare
PP_0164 -1.4 -4.4 conserved protein of unknown function compare
PP_4700 -1.4 -2.5 pantothenate synthetase compare
PP_1066 -1.3 -1.9 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4942 -1.3 -2.5 conserved protein of unknown function compare
PP_1664 -1.2 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4121 -1.2 -4.8 NADH-quinone oxidoreductase subunit C/D compare
PP_5654 -1.2 -2.8 putative phosphotriesterase compare
PP_4355 -1.2 -2.8 flagellar export apparatus subunit compare
PP_1994 -1.2 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_4383 -1.2 -4.1 Flagellar P-ring protein compare
PP_4874 -1.2 -2.2 50S ribosomal protein L9 compare
PP_1764 -1.1 -2.0 Phosphoglycolate phosphatase 2 compare
PP_3365 -1.1 -2.0 Acetolactate synthase compare
PP_2378 -1.1 -2.4 Fe/S biogenesis protein NfuA compare
PP_2899 -1.1 -2.2 conserved exported protein of unknown function compare
PP_4120 -1.1 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_0833 -1.1 -1.7 queuine tRNA-ribosyltransferase compare
PP_1733 -1.1 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4358 -1.0 -4.3 flagellar synthesis, switching and energizing component compare
PP_1344 -1.0 -2.2 conserved protein of unknown function compare
PP_5008 -1.0 -1.9 Poly granule-associated protein compare
PP_3938 -1.0 -1.7 conserved protein of unknown function compare
PP_1783 -1.0 -1.3 dTDP-glucose pyrophosphorylase compare
PP_4356 -1.0 -3.1 Flagellar protein FliO compare
PP_2568 -1.0 -1.7 Ring-cleaving dioxygenase compare
PP_0566 -1.0 -1.6 translation-related factor compare
PP_0339 -1.0 -1.6 Pyruvate dehydrogenase E1 component compare
PP_1493 -1.0 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5350 -0.9 -2.8 Transcriptional regulator, RpiR family compare
PP_4964 -0.9 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5328 -0.9 -2.1 putative phosphate transport system permease protein compare
PP_0435 -0.9 -4.0 Peptidase, M23/M37 family compare
PP_0393 -0.9 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0735 -0.9 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_4471 -0.9 -2.6 Magnesium transporter compare
PP_0888 -0.9 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_0293 -0.9 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5327 -0.9 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_4385 -0.9 -4.3 flagellar basal-body rod protein FlgG compare
PP_4352 -0.9 -6.1 flagellin export apparatus, substrate specificity protein compare
PP_0914 -0.9 -5.7 GGDEF domain protein compare
PP_0001 -0.9 -1.5 probable chromosome-partitioning protein compare
PP_0292 -0.8 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2947 -0.8 -3.5 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1217 -0.8 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4369 -0.8 -5.2 Flagellar M-ring protein compare
PP_4944 -0.8 -2.0 Carbamoyltransferase compare
PP_1734 -0.8 -1.7 Probable septum site-determining protein MinC compare
PP_4332 -0.8 -2.4 Chemotaxis protein CheW compare
PP_5533 -0.8 -1.5 conserved protein of unknown function compare
PP_5329 -0.8 -1.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0556 -0.8 -2.0 Acetoin catabolism protein compare
PP_0401 -0.8 -2.4 Ribosomal RNA small subunit methyltransferase A compare
PP_2145 -0.8 -2.1 beta-N-acetylglucosaminidase compare
PP_0872 -0.8 -3.7 Peptide chain release factor 3 compare
PP_0290 -0.8 -3.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4368 -0.7 -3.0 flagellar motor switch protein compare
PP_2050 -0.7 -3.3 conserved protein of unknown function compare
PP_4353 -0.7 -2.7 Flagellar biosynthetic protein fliR compare
PP_4380 -0.7 -6.1 Flagellar hook-associated protein FlgL compare
PP_4384 -0.7 -4.9 Flagellar L-ring protein compare
PP_4370 -0.7 -2.7 Flagellar hook-basal body complex protein FliE compare
PP_1087 -0.7 -4.6 Outer membrane protein, OmpA family compare
PP_4388 -0.7 -5.8 Flagellar hook protein FlgE compare
PP_4344 -0.7 -5.0 flagellar export pore protein compare
PP_5702 -0.7 -2.4 conserved protein of unknown function compare
PP_2402 -0.7 -1.0 putative Sensor histidine kinase compare
PP_4273 -0.7 -1.6 Transcriptional regulator, MerR family compare
PP_4391 -0.7 -3.0 flagellar basal-body rod protein FlgB compare
PP_3241 -0.7 -1.1 conserved exported protein of unknown function compare
PP_4739 -0.7 -1.5 conserved protein of unknown function compare
PP_2328 -0.7 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_4424 -0.7 -1.9 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2530 -0.7 -2.0 conserved protein of unknown function compare
PP_4386 -0.7 -3.0 flagellar basal-body rod protein FlgF compare
PP_4546 -0.7 -2.5 ATP-dependent helicase HrpA compare
PP_4593 -0.7 -1.1 conserved protein of unknown function compare
PP_4936 -0.7 -3.5 O-antigen polymerase compare
PP_4366 -0.7 -4.7 flagellum-specific ATP synthase compare
PP_t29 -0.7 -1.7 tRNA-Ala compare
PP_0273 -0.6 -2.5 conserved protein of unknown function compare
PP_2070 -0.6 -1.6 Transcriptional regulator, AraC family compare
PP_0848 -0.6 -1.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5216 -0.6 -1.2 exopolyphosphatase compare
PP_5528 -0.6 -1.1 conserved protein of unknown function compare
PP_0274 -0.6 -1.1 putative transcriptional regulator containing HTH domain compare
PP_2804 -0.6 -2.0 Hydrolase, alpha/beta fold family compare
PP_0846 -0.6 -0.6 DnaK-like molecular chaperone specific for IscU compare
PP_4394 -0.6 -3.4 flagella basal body P-ring formation protein compare
PP_1322 -0.6 -1.5 putative Lipoprotein compare
PP_1523 -0.6 -2.9 conserved protein of unknown function compare
PP_4941 -0.6 -2.2 conserved exported protein of unknown function compare
PP_4336 -0.6 -2.8 flagellar motor rotation protein compare
PP_0910 -0.6 -2.9 conserved exported protein of unknown function compare
PP_1216 -0.6 -1.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4296 -0.6 -1.3 conserved exported protein of unknown function compare
PP_2306 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4378 -0.6 -5.1 flagellin, filament structural protein compare
PP_3411 -0.6 -0.9 conserved protein of unknown function compare
PP_4376 -0.6 -4.7 flagellar filament capping protein compare
PP_2857 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4382 -0.6 -3.4 Peptidoglycan hydrolase FlgJ compare
PP_1255 -0.6 -2.1 putative cis-4-hydroxy-D-proline oxidase compare
PP_1074 -0.6 -1.9 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3770 -0.6 -1.8 conserved protein of unknown function compare
PP_2416 -0.6 -1.1 putative Iron ABC transporter, ATP-binding protein compare
PP_2509 -0.6 -2.5 conserved protein of unknown function compare
PP_0502 -0.6 -1.9 conserved protein of unknown function compare
PP_2650 -0.6 -2.3 putative 4-hydroxybutyrate dehydrogenase compare
PP_0287 -0.6 -2.7 conserved exported protein of unknown function compare
PP_4389 -0.6 -3.3 Flagellar basal-body rod modification protein FlgD compare
PP_0236 -0.6 -2.1 NAD(P)H-dependent FMN reductase subunit compare
PP_5451 -0.5 -2.1 protein of unknown function compare
PP_4591 -0.5 -2.4 Ribonuclease D compare
PP_1692 -0.5 -1.9 conserved protein of unknown function compare
PP_4390 -0.5 -2.7 flagellar basal-body rod protein FlgC compare
PP_4361 -0.5 -2.9 Flagellar hook-length control protein FliK compare
PP_0119 -0.5 -1.5 putative zinc uptake regulation protein ZUR compare
PP_5084 -0.5 -3.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4004 -0.5 -1.5 DNA translocase FtsK compare
PP_1935 -0.5 -1.1 Transcriptional regulator, Cro/CI family compare
PP_4804 -0.5 -1.1 RlpA-like lipoprotein compare
PP_4365 -0.5 -2.0 Flagellar protein FliJ compare
PP_5580 -0.5 -1.5 protein of unknown function compare
PP_5621 -0.5 -1.2 protein of unknown function compare
PP_5331 -0.5 -1.3 Long-chain acyl-CoA thioester hydrolase compare
PP_2031 -0.5 -1.4 conserved protein of unknown function compare
PP_5265 -0.5 -3.0 Xanthine phosphoribosyltransferase compare
PP_2243 -0.5 -2.1 conserved protein of unknown function compare
PP_3539 -0.5 -1.1 putative Transcriptional regulator compare
PP_3225 -0.5 -2.5 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1876 -0.5 -2.3 putative ATP/GTP-binding protein of the AAA+ family compare
PP_2087 -0.5 -1.2 CmpX protein compare
PP_5730 -0.5 -2.9 conserved protein of unknown function compare
PP_4584 -0.5 -2.3 putative endonuclease compare
PP_4937 -0.5 -1.9 toluene tolerance protein compare
PP_4354 -0.5 -1.1 flagellar export apparatus subunit compare
PP_0980 -0.5 -3.2 Probable cytosol aminopeptidase compare
PP_3035 -0.5 -0.8 conserved protein of unknown function compare
PP_4331 -0.5 -2.4 conserved protein of unknown function compare
PP_5600 -0.5 -2.1 conserved protein of unknown function compare
PP_4130 -0.5 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0685 -0.5 -1.6 conserved protein of unknown function compare
PP_2322 -0.5 -1.3 Major outer membrane lipoprotein compare
PP_4124 -0.5 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_2137 -0.5 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_1454 -0.5 -1.8 conserved protein of unknown function compare
PP_0306 -0.5 -1.5 conserved protein of unknown function compare
PP_5100 -0.5 -2.2 dITP/XTP pyrophosphatase compare
PP_2319 -0.5 -2.5 conserved protein of unknown function compare
PP_3408 -0.5 -1.9 cobalt transporter subunit A compare
PP_0048 -0.5 -1.0 conserved protein of unknown function compare
PP_4419 -0.5 -1.6 transposase compare
PP_5339 -0.5 -1.7 transcriptional regulator, ornithine utilization compare
PP_4381 -0.5 -3.9 Flagellar hook-associated protein FlgK compare
PP_1473 -0.5 -1.6 conserved protein of unknown function compare
PP_3307 -0.5 -1.6 conserved protein of unknown function compare
PP_2370 -0.5 -1.0 conserved protein of unknown function compare
PP_2220 -0.5 -1.7 C4-type zinc finger protein, DksA/TraR family compare
PP_1763 -0.5 -1.7 putative oxidoreductase compare
PP_0345 -0.5 -1.7 putative Heptose kinase WapP compare
PP_0188 -0.5 -2.4 putative Uroporphyrin-III C-methyltransferase compare
PP_2379 -0.5 -1.8 putative cytochrome oxidase biogenesis protein compare
PP_4981 -0.5 -1.8 polyisoprene-binding protein, acidic stress response factor compare
PP_1609 -0.5 -1.3 conserved protein of unknown function compare
PP_4341 -0.5 -2.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0801 -0.5 -0.9 conserved exported protein of unknown function compare
PP_0963 -0.5 -1.1 putative BolA family protein compare
PP_4999 -0.5 -0.3 dihydroorotase-like protein compare
PP_0346 -0.5 -3.0 putative Heptose kinase WapQ compare
PP_3766 -0.5 -1.4 Lactoylglutathione lyase compare
PP_3105 -0.5 -1.1 conserved membrane protein of unknown function compare
PP_4997 -0.5 -0.7 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3840 -0.5 -0.8 conserved protein of unknown function compare
PP_0978 -0.5 -1.5 conserved protein of unknown function compare
PP_4609 -0.5 -2.5 conserved membrane protein of unknown function compare
PP_4359 -0.5 -2.1 Flagellar protein FliL compare
PP_4803 -0.5 -2.7 D-alanyl-D-alanine carboxypeptidase compare
PP_0754 -0.4 -1.7 conserved protein of unknown function compare
PP_4335 -0.4 -2.7 flagellar motor protein compare
PP_5352 -0.4 -3.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2186 -0.4 -1.7 putative Formate dehydrogenase, delta subunit compare
PP_2455 -0.4 -2.0 ribose ABC transporter - ATP-binding subunit compare
PP_0377 -0.4 -1.2 coenzyme PQQ synthesis protein D compare
PP_5310 -0.4 -1.9 junction-specific ATP-dependent DNA helicase compare
PP_0235 -0.4 -1.5 Peroxidase compare
PP_5644 -0.4 -1.7 conserved membrane protein of unknown function compare
PP_1153 -0.4 -1.2 putative lipoprotein compare
PP_0440 -0.4 -1.9 Elongation factor Tu-A compare
PP_2371 -0.4 -2.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0904 -0.4 -2.8 InaA protein compare
PP_5519 -0.4 -1.4 conserved protein of unknown function of phage origin compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nophagecontrol experiments