Experiment set40IT065 for Pseudomonas putida KT2440

Compare to:

No phage control

200 most important genes:

  gene name fitness t score description  
PP_0164 -3.0 -3.6 conserved protein of unknown function compare
PP_3726 -2.9 -2.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_2414 -2.7 -3.0 conserved exported protein of unknown function compare
PP_0833 -1.9 -2.2 queuine tRNA-ribosyltransferase compare
PP_2568 -1.9 -2.3 Ring-cleaving dioxygenase compare
PP_0001 -1.8 -2.2 probable chromosome-partitioning protein compare
PP_4943 -1.8 -2.7 putative Glycosyl transferase compare
PP_4700 -1.7 -2.3 pantothenate synthetase compare
PP_4902 -1.6 -2.4 Oligoribonuclease compare
PP_1468 -1.5 -1.6 Tyrosine recombinase XerD compare
PP_4120 -1.5 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_1493 -1.5 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4471 -1.5 -3.2 Magnesium transporter compare
PP_0719 -1.5 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0691 -1.5 -1.4 Glutamate 5-kinase compare
PP_5471 -1.5 -2.3 putative response regulator receiver protein compare
PP_1764 -1.4 -2.6 Phosphoglycolate phosphatase 2 compare
PP_4804 -1.4 -1.6 RlpA-like lipoprotein compare
PP_5329 -1.4 -1.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4354 -1.3 -3.0 flagellar export apparatus subunit compare
PP_4356 -1.3 -2.6 Flagellar protein FliO compare
PP_1099 -1.3 -1.8 Cold shock protein CapB compare
PP_4353 -1.3 -5.2 Flagellar biosynthetic protein fliR compare
PP_0914 -1.2 -7.1 GGDEF domain protein compare
PP_1898 -1.2 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4546 -1.2 -3.4 ATP-dependent helicase HrpA compare
PP_1217 -1.1 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4368 -1.1 -4.5 flagellar motor switch protein compare
PP_5331 -1.1 -2.8 Long-chain acyl-CoA thioester hydrolase compare
PP_3481 -1.1 -1.4 conserved exported protein of unknown function compare
PP_4344 -1.0 -6.7 flagellar export pore protein compare
PP_1571 -1.0 -2.5 conserved protein of unknown function compare
PP_4370 -1.0 -3.4 Flagellar hook-basal body complex protein FliE compare
PP_0339 -1.0 -1.6 Pyruvate dehydrogenase E1 component compare
PP_1783 -1.0 -1.1 dTDP-glucose pyrophosphorylase compare
PP_2581 -1.0 -2.1 conserved protein of unknown function compare
PP_4355 -1.0 -2.4 flagellar export apparatus subunit compare
PP_4358 -1.0 -4.9 flagellar synthesis, switching and energizing component compare
PP_2899 -1.0 -1.6 conserved exported protein of unknown function compare
PP_4126 -1.0 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4121 -1.0 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_5571 -0.9 -1.5 conserved protein of unknown function compare
PP_4383 -0.9 -2.5 Flagellar P-ring protein compare
PP_4362 -0.9 -3.1 conserved protein of unknown function compare
PP_1216 -0.9 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4008 -0.9 -2.8 ATP-dependent serine protease compare
PP_4895 -0.9 -1.6 tRNA dimethylallyltransferase compare
PP_0218 -0.9 -4.5 Sensory box protein compare
PP_5038 -0.8 -2.7 conserved lipoprotein of unknown function compare
PP_0290 -0.8 -4.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5279 -0.8 -2.8 conserved protein of unknown function compare
PP_0888 -0.8 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4366 -0.8 -5.7 flagellum-specific ATP synthase compare
PP_5051 -0.8 -1.9 conserved protein of unknown function compare
PP_5063 -0.8 -3.0 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_4989 -0.8 -2.1 Protein PilJ compare
PP_4129 -0.8 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4369 -0.8 -5.1 Flagellar M-ring protein compare
PP_1994 -0.8 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_4390 -0.8 -4.5 flagellar basal-body rod protein FlgC compare
PP_4379 -0.8 -1.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3614 -0.8 -2.5 conserved membrane protein of unknown function compare
PP_3365 -0.8 -1.4 Acetolactate synthase compare
PP_4367 -0.8 -2.8 Flagellar assembly protein FliH compare
PP_2145 -0.8 -2.2 beta-N-acetylglucosaminidase compare
PP_4004 -0.8 -1.7 DNA translocase FtsK compare
PP_1548 -0.8 -1.9 conserved protein of unknown function compare
PP_4394 -0.8 -3.3 flagella basal body P-ring formation protein compare
PP_3824 -0.8 -2.1 conserved exported protein of unknown function compare
PP_1087 -0.8 -4.7 Outer membrane protein, OmpA family compare
PP_4365 -0.8 -2.5 Flagellar protein FliJ compare
PP_1568 -0.7 -1.1 conserved protein of unknown function compare
PP_4824 -0.7 -3.0 Sensor histidine kinase/response regulator compare
PP_1142 -0.7 -1.0 conserved protein of unknown function compare
PP_4352 -0.7 -5.2 flagellin export apparatus, substrate specificity protein compare
PP_1261 -0.7 -2.2 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_2611 -0.7 -2.2 membrane protein of unknown function compare
PP_1215 -0.7 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0293 -0.7 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2302 -0.7 -2.8 DNA-binding, ATP-dependent protease compare
PP_2378 -0.7 -1.3 Fe/S biogenesis protein NfuA compare
PP_4388 -0.7 -5.4 Flagellar hook protein FlgE compare
PP_2328 -0.7 -2.7 Phosphoadenosine phosphosulfate reductase compare
PP_0435 -0.7 -3.4 Peptidase, M23/M37 family compare
PP_5674 -0.7 -2.0 conserved protein of unknown function compare
PP_4386 -0.7 -3.5 flagellar basal-body rod protein FlgF compare
PP_0326 -0.7 -3.0 sarcosine oxidase subunit gamma compare
PP_4384 -0.7 -4.4 Flagellar L-ring protein compare
PP_5701 -0.7 -1.2 conserved protein of unknown function compare
PP_2088 -0.7 -1.7 RNA polymerase sigma factor SigX compare
PP_1778 -0.7 -2.2 Lipopolysaccharide ABC export system, permease protein compare
PP_5352 -0.7 -4.4 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4073 -0.7 -1.4 conserved exported protein of unknown function compare
PP_3198 -0.7 -1.4 Ferredoxin, 2Fe-2S compare
PP_4136 -0.7 -0.7 Transcriptional regulator, LuxR family compare
PP_0978 -0.7 -2.2 conserved protein of unknown function compare
PP_1629 -0.7 -2.9 Protein RecA compare
PP_4098 -0.7 -1.2 UvrABC system protein C compare
PP_4328 -0.7 -2.7 conserved protein of unknown function compare
PP_4381 -0.6 -5.0 Flagellar hook-associated protein FlgK compare
PP_3810 -0.6 -1.1 conserved protein of unknown function compare
PP_1662 -0.6 -2.7 conserved protein of unknown function compare
PP_4389 -0.6 -3.8 Flagellar basal-body rod modification protein FlgD compare
PP_3105 -0.6 -1.5 conserved membrane protein of unknown function compare
PP_4337 -0.6 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_3930 -0.6 -2.2 conserved exported protein of unknown function compare
PP_4936 -0.6 -3.2 O-antigen polymerase compare
PP_1491 -0.6 -2.7 CheW domain protein compare
PP_4385 -0.6 -2.4 flagellar basal-body rod protein FlgG compare
PP_4569 -0.6 -1.6 conserved protein of unknown function compare
PP_0434 -0.6 -2.0 Anhydro-N-acetylmuramic acid kinase compare
PP_5604 -0.6 -0.9 putative subtilisin-like serine protease compare
PP_1454 -0.6 -2.3 conserved protein of unknown function compare
PP_2455 -0.6 -3.3 ribose ABC transporter - ATP-binding subunit compare
PP_2939 -0.6 -2.7 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_0910 -0.6 -3.2 conserved exported protein of unknown function compare
PP_4382 -0.6 -3.3 Peptidoglycan hydrolase FlgJ compare
PP_0258 -0.6 -1.9 regulator of murein cross-linking compare
PP_4109 -0.6 -1.8 conserved protein of unknown function compare
PP_0283 -0.6 -2.3 Arginine/ornithine transport ATP-binding protein AotP compare
PP_4361 -0.6 -3.2 Flagellar hook-length control protein FliK compare
PP_0346 -0.6 -3.3 putative Heptose kinase WapQ compare
PP_1734 -0.6 -1.3 Probable septum site-determining protein MinC compare
PP_2794 -0.6 -1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3519 -0.6 -0.7 putative Lipoprotein compare
PP_4380 -0.6 -4.4 Flagellar hook-associated protein FlgL compare
PP_1269 -0.5 -0.8 Universal stress protein family compare
PP_3035 -0.5 -1.3 conserved protein of unknown function compare
PP_4904 -0.5 -3.5 Flagellar motor rotation protein compare
PP_4376 -0.5 -4.0 flagellar filament capping protein compare
PP_1922 -0.5 -2.5 conserved protein of unknown function compare
PP_5084 -0.5 -3.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5717 -0.5 -0.9 conserved protein of unknown function compare
PP_0236 -0.5 -2.0 NAD(P)H-dependent FMN reductase subunit compare
PP_5652 -0.5 -1.1 conserved protein of unknown function, phage origin compare
PP_2900 -0.5 -1.3 conserved protein of unknown function compare
PP_0872 -0.5 -2.2 Peptide chain release factor 3 compare
PP_4937 -0.5 -2.1 toluene tolerance protein compare
PP_4391 -0.5 -2.7 flagellar basal-body rod protein FlgB compare
PP_2137 -0.5 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_1804 -0.5 -2.9 Glycosyl transferase WbpL compare
PP_0401 -0.5 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_4273 -0.5 -1.1 Transcriptional regulator, MerR family compare
PP_1355 -0.5 -3.4 Muropeptide permease AmpG compare
PP_4944 -0.5 -1.4 Carbamoyltransferase compare
PP_2160 -0.5 -1.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4905 -0.5 -2.9 Flagellar motor rotation protein compare
PP_2138 -0.5 -2.2 conserved protein of unknown function compare
PP_5472 -0.5 -2.4 conserved exported protein of unknown function compare
PP_2550 -0.5 -1.5 putative transcriptional regulatory protein compare
PP_5393 -0.5 -1.0 putative metal-binding chaperone compare
PP_4739 -0.5 -1.5 conserved protein of unknown function compare
PP_1293 -0.5 -0.8 molybdopterin synthase small subunit compare
PP_0058 -0.5 -3.8 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1729 -0.5 -0.9 conserved protein of unknown function compare
PP_3963 -0.5 -2.4 conserved protein of unknown function compare
PP_3098 -0.5 -0.8 conserved protein of unknown function compare
PP_1536 -0.5 -1.8 conserved protein of unknown function compare
PP_4833 -0.5 -2.0 SURF1 domain protein compare
PP_0905 -0.5 -0.9 conserved exported protein of unknown function compare
PP_0065 -0.5 -1.4 NAD-binding component of TrK potassium transporter compare
PP_1562 -0.5 -0.8 putative Phage terminase, small subunit compare
PP_0127 -0.5 -1.2 Thiol:disulfide interchange protein compare
PP_4449 -0.5 -2.1 conserved protein of unknown function compare
PP_1789 -0.5 -1.8 Hydrolase, haloacid dehalogenase-like family compare
PP_1232 -0.5 -1.5 conserved exported protein of unknown function compare
PP_0345 -0.5 -1.7 putative Heptose kinase WapP compare
PP_2540 -0.5 -1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1303 -0.5 -2.9 Sulfate adenylyltransferase subunit 2 compare
PP_4609 -0.5 -2.4 conserved membrane protein of unknown function compare
PP_3884 -0.5 -1.4 Phage holin, lambda family compare
PP_0069 -0.5 -2.6 putative Rossmann fold nucleotide-binding protein compare
PP_5328 -0.5 -1.1 putative phosphate transport system permease protein compare
PP_4343 -0.5 -2.1 Flagellar biosynthesis protein FlhF compare
PP_4094 -0.5 -1.2 conserved protein of unknown function compare
PP_3693 -0.5 -1.4 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0908 -0.5 -2.4 conserved exported protein of unknown function compare
PP_2681 -0.5 -1.2 coenzyme PQQ synthesis protein D compare
PP_4230 -0.5 -2.4 conserved exported protein of unknown function compare
PP_1779 -0.5 -1.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4938 -0.5 -2.6 putative Glycosyl transferase compare
PP_1255 -0.5 -1.7 putative cis-4-hydroxy-D-proline oxidase compare
PP_2880 -0.5 -1.6 Transcriptional regulator, TetR family compare
PP_2677 -0.5 -1.6 conserved exported protein of unknown function compare
PP_0405 -0.5 -2.5 conserved protein of unknown function compare
PP_3960 -0.5 -2.5 Transcriptional regulator, TetR family compare
PP_4341 -0.5 -2.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0232 -0.5 -0.9 ATP-binding taurine transporter subunit compare
PP_2281 -0.4 -1.6 putative Capsid assembly protein compare
PP_2424 -0.4 -2.5 putative 2'-5' RNA ligase compare
PP_4331 -0.4 -2.1 conserved protein of unknown function compare
PP_2269 -0.4 -1.8 putative N-acetylmuramoyl-L-alanine amidase compare
PP_5236 -0.4 -2.7 conserved protein of unknown function compare
PP_4308 -0.4 -1.7 Transcriptional regulator, AsnC family compare
PP_1051 -0.4 -1.8 Type II secretion pathway protein XcpV compare
PP_5600 -0.4 -1.2 conserved protein of unknown function compare
PP_2172 -0.4 -1.8 conserved exported protein of unknown function compare
PP_2908 -0.4 -1.3 DNA-binding transcriptional repressor compare
PP_4214 -0.4 -1.9 pyoverdine biosynthesis related protein compare
PP_3239 -0.4 -0.9 putative cointegrate resolution protein T Tn4652 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nophagecontrol experiments