| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +5.0 | 15.0 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +4.8 | 43.5 | glycine dehydrogenase (NCBI) | compare |
| b3163 | nlpI | +4.6 | 22.0 | hypothetical protein (NCBI) | compare |
| b2905 | gcvT | +4.3 | 29.3 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b3405 | ompR | +4.3 | 19.4 | osmolarity response regulator (NCBI) | compare |
| b1830 | prc | +4.1 | 21.6 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b2951 | yggS | +3.5 | 24.9 | predicted enzyme (NCBI) | compare |
| b0222 | lpcA | +3.0 | 10.5 | phosphoheptose isomerase (NCBI) | compare |
| b3620 | rfaF | +2.9 | 15.6 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3621 | rfaC | +2.8 | 16.6 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b0053 | surA | +2.6 | 16.9 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b4042 | dgkA | +2.6 | 5.6 | diacylglycerol kinase (NCBI) | compare |
| b3753 | rbsR | +2.6 | 18.4 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2572 | rseA | +2.6 | 5.1 | anti-sigma factor (NCBI) | compare |
| b3052 | rfaE | +2.6 | 12.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0438 | clpX | +2.5 | 15.6 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3619 | rfaD | +2.5 | 9.8 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3630 | rfaP | +2.5 | 19.8 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3194 | yrbE | +2.5 | 6.8 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1863 | ruvC | +2.4 | 7.5 | Holliday junction resolvase (NCBI) | compare |
| b0437 | clpP | +2.4 | 10.1 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b3199 | yrbK | +2.4 | 4.9 | hypothetical protein (NCBI) | compare |
| b3261 | fis | +2.4 | 8.9 | DNA-binding protein Fis (NCBI) | compare |
| b0178 | hlpA | +2.3 | 6.2 | periplasmic chaperone (NCBI) | compare |
| b3842 | rfaH | +2.3 | 14.0 | transcriptional activator RfaH (NCBI) | compare |
| b3787 | rffD | +2.3 | 18.5 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3404 | envZ | +2.3 | 12.5 | osmolarity sensor protein (NCBI) | compare |
| b3784 | rfe | +2.2 | 17.4 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3631 | rfaG | +2.2 | 18.8 | glucosyltransferase I (NCBI) | compare |
| b2808 | gcvA | +2.2 | 6.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2742 | nlpD | +2.2 | 11.8 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1332 | ynaJ | +2.1 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b3786 | rffE | +2.1 | 16.0 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b4402 | yjjY | +2.0 | 1.1 | hypothetical protein (NCBI) | compare |
| b0632 | dacA | +2.0 | 11.7 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b4701 | sokX | +2.0 | 1.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b2829 | ptsP | +2.0 | 12.5 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b4450 | arcZ | +2.0 | 7.2 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b3794 | rffM | +1.9 | 13.2 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b0957 | ompA | +1.9 | 5.2 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b3785 | wzzE | +1.9 | 14.0 | putative transport protein (VIMSS) | compare |
| b2188 | yejM | +1.9 | 11.1 | predicted hydrolase, inner membrane (NCBI) | compare |
| b3150 | yraP | +1.8 | 10.7 | hypothetical protein (NCBI) | compare |
| b2144 | sanA | +1.8 | 12.8 | hypothetical protein (NCBI) | compare |
| b3791 | rffA | +1.8 | 10.3 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b4203 | rplI | +1.8 | 9.0 | 50S ribosomal protein L9 (NCBI) | compare |
| b4481 | rffT | +1.7 | 9.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b4169 | amiB | +1.7 | 11.8 | N-acetylmuramoyl-l-alanine amidase II (NCBI) | compare |
| b0092 | ddlB | +1.7 | 6.7 | D-alanylalanine synthetase (NCBI) | compare |
| b3181 | greA | +1.7 | 7.3 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3229 | sspA | +1.6 | 4.9 | stringent starvation protein A (NCBI) | compare |
| b0912 | ihfB | +1.6 | 7.0 | integration host factor subunit beta (NCBI) | compare |
| b3164 | pnp | +1.6 | 4.5 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3790 | rffC | +1.6 | 7.6 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b3234 | degQ | +1.5 | 9.6 | serine endoprotease, periplasmic (NCBI) | compare |
| b3655 | yicH | +1.5 | 12.8 | hypothetical protein (NCBI) | compare |
| b0051 | ksgA | +1.5 | 6.4 | dimethyladenosine transferase (NCBI) | compare |
| b0688 | pgm | +1.5 | 4.9 | phosphoglucomutase (NCBI) | compare |
| b3472 | b3472 | +1.5 | 9.1 | orf, hypothetical protein (VIMSS) | compare |
| b2494 | yfgC | +1.5 | 9.1 | predicted peptidase (NCBI) | compare |
| b2017 | yefM | +1.5 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1524 | yneH | +1.5 | 1.5 | predicted glutaminase (NCBI) | compare |
| b2512 | yfgL | +1.4 | 6.1 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1095 | fabF | +1.4 | 7.8 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b0502 | ylbG | +1.4 | 1.9 | no description | compare |
| b3388 | damX | +1.4 | 11.7 | hypothetical protein (NCBI) | compare |
| b3206 | npr | +1.4 | 6.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0929 | ompF | +1.3 | 5.2 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b0889 | lrp | +1.3 | 2.7 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1278 | pgpB | +1.3 | 2.2 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b2783 | chpR | +1.3 | 1.6 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b1628 | rsxB | +1.3 | 2.3 | electron transport complex protein RnfB (NCBI) | compare |
| b3529 | yhjK | +1.3 | 10.1 | predicted diguanylate cyclase (RefSeq) | compare |
| b4505 | insX | +1.3 | 1.8 | predicted IS protein (RefSeq) | compare |
| b4552 | yrhC | +1.3 | 1.4 | no description | compare |
| b0059 | hepA | +1.3 | 10.7 | ATP-dependent helicase HepA (NCBI) | compare |
| b4699 | fnrS | +1.3 | 1.3 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4172 | hfq | +1.3 | 2.0 | RNA-binding protein Hfq (NCBI) | compare |
| b2688 | gshA | +1.3 | 6.5 | glutamate--cysteine ligase (NCBI) | compare |
| b3443 | yrhA | +1.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1108 | ycfP | +1.2 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1150 | ymfR | +1.2 | 1.3 | e14 prophage; predicted protein (NCBI) | compare |
| b1677 | lpp | +1.2 | 4.6 | murein lipoprotein (NCBI) | compare |
| b2110 | yehC | +1.2 | 2.0 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b1293 | sapB | +1.2 | 1.4 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0630 | lipB | +1.2 | 1.9 | protein of lipoate biosynthesis (VIMSS) | compare |
| b4141 | yjeH | +1.2 | 8.1 | predicted transporter (NCBI) | compare |
| b2830 | nudH | +1.2 | 1.8 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2743 | pcm | +1.1 | 4.4 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b3027 | ygiZ | +1.1 | 1.0 | conserved inner membrane protein (NCBI) | compare |
| b3341 | rpsG | +1.1 | 1.0 | 30S ribosomal protein S7 (NCBI) | compare |
| b1358 | ydaT | +1.1 | 1.8 | Rac prophage; predicted protein (NCBI) | compare |
| b4375 | prfC | +1.1 | 3.8 | peptide chain release factor 3 (NCBI) | compare |
| b2362 | yfdS | +1.1 | 4.2 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1861 | ruvA | +1.1 | 1.7 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b2285 | nuoE | +1.1 | 1.6 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3838 | tatB | +1.1 | 4.9 | sec-independent translocase (NCBI) | compare |
| b3210 | arcB | +1.1 | 4.9 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1556 | b1556 | +1.1 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1824 | yobF | +1.1 | 2.6 | hypothetical protein (NCBI) | compare |
| b1984 | asnW | +1.1 | 1.4 | tRNA-Asn (NCBI) | compare |
| b2183 | rsuA | +1.0 | 3.0 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b2946 | yggJ | +1.0 | 3.5 | orf, hypothetical protein (VIMSS) | compare |
| b2352 | yfdI | +1.0 | 1.3 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b4596 | yciZ | +1.0 | 0.9 | hypothetical protein (RefSeq) | compare |
| b2279 | nuoK | +1.0 | 0.8 | NADH dehydrogenase subunit K (NCBI) | compare |
| b4171 | miaA | +1.0 | 2.6 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b3643 | rph | +1.0 | 3.8 | ribonuclease PH (NCBI) | compare |
| b3260 | dusB | +1.0 | 3.9 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b3198 | kdsC | +1.0 | 2.5 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2620 | smpB | +1.0 | 0.9 | SsrA-binding protein (NCBI) | compare |
| b1183 | umuD | +1.0 | 1.0 | DNA polymerase V, subunit D (NCBI) | compare |
| b1271 | yciK | +1.0 | 2.1 | short chain dehydrogenase (NCBI) | compare |
| b0791 | ybhQ | +0.9 | 4.0 | predicted inner membrane protein (NCBI) | compare |
| b4202 | rpsR | +0.9 | 1.1 | 30S ribosomal protein S18 (NCBI) | compare |
| b3752 | rbsK | +0.9 | 4.4 | ribokinase (NCBI) | compare |
| b1630 | rsxD | +0.9 | 2.8 | electron transport complex protein RnfD (NCBI) | compare |
| b2297 | pta | +0.9 | 0.5 | phosphate acetyltransferase (NCBI) | compare |
| b4436 | ryeC | +0.9 | 1.7 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b0843 | ybjH | +0.9 | 1.4 | hypothetical protein (NCBI) | compare |
| b4642 | yoeD | +0.9 | 2.0 | no description | compare |
| b1217 | chaB | +0.9 | 1.4 | cation transport regulator (NCBI) | compare |
| b2432 | yfeY | +0.9 | 2.1 | hypothetical protein (NCBI) | compare |
| b1814 | sdaA | +0.9 | 2.1 | L-serine deaminase I (NCBI) | compare |
| b1038 | csgF | +0.9 | 2.2 | predicted transport protein (NCBI) | compare |
| b4653 | yicT | +0.9 | 0.9 | no description | compare |
| b4546 | ypeB | +0.9 | 1.0 | hypothetical protein (NCBI) | compare |
| b3911 | cpxA | +0.9 | 5.7 | two-component sensor protein (NCBI) | compare |
| b2516 | yfgA | +0.9 | 3.6 | hypothetical protein (NCBI) | compare |
| b1572 | ydfB | +0.9 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2947 | gshB | +0.9 | 3.0 | glutathione synthetase (NCBI) | compare |
| b2846 | yqeH | +0.9 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b1884 | cheR | +0.9 | 2.3 | chemotaxis regulator, protein-glutamate methyltransferase (NCBI) | compare |
| b4163 | glyV | +0.9 | 0.7 | tRNA-Gly (NCBI) | compare |
| b1575 | dicB | +0.8 | 0.8 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1636 | pdxY | +0.8 | 2.7 | pyridoxine kinase (NCBI) | compare |
| b2064 | asmA | +0.8 | 4.3 | predicted assembly protein (NCBI) | compare |
| b0121 | speE | +0.8 | 3.7 | spermidine synthase (NCBI) | compare |
| b1493 | gadB | +0.8 | 0.7 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1953 | b1953 | +0.8 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2141 | yohJ | +0.8 | 1.4 | hypothetical protein (NCBI) | compare |
| b4594 | ymgJ | +0.8 | 1.7 | hypothetical protein (RefSeq) | compare |
| b1604 | ydgH | +0.8 | 3.3 | hypothetical protein (NCBI) | compare |
| b4100 | phnH | +0.8 | 2.9 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b3977 | tyrU | +0.8 | 0.8 | tRNA-Tyr (NCBI) | compare |
| b1874 | cutC | +0.8 | 1.8 | copper homeostasis protein (NCBI) | compare |
| b2278 | nuoL | +0.8 | 3.8 | NADH dehydrogenase subunit L (NCBI) | compare |
| b3351 | kefG | +0.8 | 3.6 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b3192 | yrbC | +0.8 | 4.5 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4181 | yjfI | +0.8 | 2.0 | hypothetical protein (NCBI) | compare |
| b0249 | ykfF | +0.8 | 1.6 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1503 | ydeR | +0.8 | 2.4 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2066 | udk | +0.8 | 2.9 | uridine/cytidine kinase (VIMSS) | compare |
| b0633 | rlpA | +0.8 | 4.2 | minor lipoprotein (NCBI) | compare |
| b3197 | kdsD | +0.8 | 4.0 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b4592 | yccB | +0.8 | 1.6 | hypothetical protein (RefSeq) | compare |
| b2741 | rpoS | +0.8 | 2.8 | RNA polymerase sigma factor (NCBI) | compare |
| b0430 | cyoC | +0.8 | 2.6 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b2287 | nuoB | +0.8 | 2.1 | NADH dehydrogenase subunit B (NCBI) | compare |
| b3193 | yrbD | +0.8 | 4.4 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b2258 | b2258 | +0.8 | 0.8 | putative transport/receptor protein (VIMSS) | compare |
| b0882 | clpA | +0.8 | 3.5 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b2346 | vacJ | +0.8 | 4.4 | predicted lipoprotein (NCBI) | compare |
| b2286 | nuoC | +0.8 | 2.7 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b4472 | yhdP | +0.8 | 6.1 | conserved membrane protein, predicted transporter (NCBI) | compare |
| b1606 | folM | +0.8 | 3.7 | short chain dehydrogenase (NCBI) | compare |
| b4373 | rimI | +0.8 | 1.5 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1634 | tppB | +0.7 | 2.9 | putative tripeptide transporter permease (NCBI) | compare |
| b0247 | ykfG | +0.7 | 0.9 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2277 | nuoM | +0.7 | 2.5 | NADH dehydrogenase subunit M (NCBI) | compare |
| b4155 | yjeA | +0.7 | 0.8 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b3484 | yhhI | +0.7 | 1.8 | predicted transposase (NCBI) | compare |
| b1222 | narX | +0.7 | 2.9 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b3836 | b3836 | +0.7 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1190 | dadX | +0.7 | 2.6 | alanine racemase (NCBI) | compare |
| b3632 | rfaQ | +0.7 | 6.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0197 | metQ | +0.7 | 4.3 | DL-methionine transporter subunit (NCBI) | compare |
| b1482 | osmC | +0.7 | 1.3 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b4391 | yjjK | +0.7 | 4.2 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2377 | yfdY | +0.7 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b3652 | recG | +0.7 | 3.7 | ATP-dependent DNA helicase (NCBI) | compare |
| b0542 | renD | +0.7 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0295 | ykgL | +0.7 | 3.2 | hypothetical protein (NCBI) | compare |
| b1422 | ydcI | +0.7 | 4.1 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b0432 | cyoA | +0.7 | 4.5 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b0852 | rimK | +0.7 | 2.7 | ribosomal protein S6 modification protein (NCBI) | compare |
| b3191 | yrbB | +0.7 | 4.2 | orf, hypothetical protein (VIMSS) | compare |
| b4558 | yifL | +0.7 | 1.6 | predicted lipoprotein (NCBI) | compare |
| b2635 | ypjK | +0.7 | 1.5 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1793 | yoaF | +0.7 | 1.1 | conserved outer membrane protein (NCBI) | compare |
| b1712 | ihfA | +0.7 | 1.3 | integration host factor subunit alpha (NCBI) | compare |
| b1013 | ycdC | +0.7 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3021 | ygiT | +0.7 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0429 | cyoD | +0.7 | 1.8 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b0738 | tolR | +0.7 | 1.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2817 | b2817 | +0.7 | 2.4 | putative amidase (VIMSS) | compare |
| b3195 | yrbF | +0.7 | 4.1 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2058 | wcaB | +0.7 | 0.8 | predicted acyl transferase (NCBI) | compare |
| b0381 | ddlA | +0.7 | 3.5 | D-alanylalanine synthetase (NCBI) | compare |
| b0741 | pal | +0.7 | 2.6 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |