| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +4.6 | 18.3 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +4.1 | 35.9 | glycine dehydrogenase (NCBI) | compare |
| b2905 | gcvT | +3.6 | 21.1 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2951 | yggS | +3.5 | 21.7 | predicted enzyme (NCBI) | compare |
| b1830 | prc | +3.4 | 19.0 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3163 | nlpI | +3.4 | 13.8 | hypothetical protein (NCBI) | compare |
| b2572 | rseA | +3.2 | 6.1 | anti-sigma factor (NCBI) | compare |
| b3261 | fis | +2.8 | 9.4 | DNA-binding protein Fis (NCBI) | compare |
| b3082 | ygjM | +2.8 | 4.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3911 | cpxA | +2.8 | 19.6 | two-component sensor protein (NCBI) | compare |
| b2829 | ptsP | +2.8 | 20.2 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3405 | ompR | +2.8 | 10.8 | osmolarity response regulator (NCBI) | compare |
| b0178 | hlpA | +2.7 | 13.9 | periplasmic chaperone (NCBI) | compare |
| b4042 | dgkA | +2.7 | 8.1 | diacylglycerol kinase (NCBI) | compare |
| b3784 | rfe | +2.7 | 22.2 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3206 | npr | +2.5 | 13.5 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3472 | b3472 | +2.5 | 19.9 | orf, hypothetical protein (VIMSS) | compare |
| b0053 | surA | +2.4 | 16.0 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b2808 | gcvA | +2.4 | 11.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0222 | lpcA | +2.3 | 10.5 | phosphoheptose isomerase (NCBI) | compare |
| b3787 | rffD | +2.3 | 18.5 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3052 | rfaE | +2.3 | 9.6 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3786 | rffE | +2.3 | 19.0 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3620 | rfaF | +2.3 | 12.6 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3621 | rfaC | +2.2 | 14.0 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3529 | yhjK | +2.2 | 16.9 | predicted diguanylate cyclase (RefSeq) | compare |
| b3655 | yicH | +2.2 | 19.1 | hypothetical protein (NCBI) | compare |
| b3794 | rffM | +2.2 | 13.6 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1677 | lpp | +2.1 | 7.4 | murein lipoprotein (NCBI) | compare |
| b3753 | rbsR | +2.1 | 15.7 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2830 | nudH | +2.0 | 3.6 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3164 | pnp | +2.0 | 5.2 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b4458 | oxyS | +1.9 | 3.1 | global regulatory RNA (NCBI) | compare |
| b0059 | hepA | +1.8 | 15.6 | ATP-dependent helicase HepA (NCBI) | compare |
| b2017 | yefM | +1.7 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b3785 | wzzE | +1.7 | 11.7 | putative transport protein (VIMSS) | compare |
| b0632 | dacA | +1.7 | 10.1 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b3181 | greA | +1.7 | 8.5 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4203 | rplI | +1.7 | 7.5 | 50S ribosomal protein L9 (NCBI) | compare |
| b3643 | rph | +1.6 | 5.0 | ribonuclease PH (NCBI) | compare |
| b0437 | clpP | +1.6 | 7.8 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b4481 | rffT | +1.6 | 10.2 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3790 | rffC | +1.5 | 10.5 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b3619 | rfaD | +1.5 | 7.0 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b2144 | sanA | +1.5 | 11.7 | hypothetical protein (NCBI) | compare |
| b3630 | rfaP | +1.5 | 11.5 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3021 | ygiT | +1.5 | 3.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1360 | ydaV | +1.5 | 2.0 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b2494 | yfgC | +1.4 | 8.3 | predicted peptidase (NCBI) | compare |
| b3631 | rfaG | +1.4 | 12.2 | glucosyltransferase I (NCBI) | compare |
| b3791 | rffA | +1.4 | 9.5 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b4402 | yjjY | +1.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b4592 | yccB | +1.4 | 1.9 | hypothetical protein (RefSeq) | compare |
| b2742 | nlpD | +1.3 | 7.4 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1446 | ydcY | +1.3 | 2.9 | hypothetical protein (NCBI) | compare |
| b4171 | miaA | +1.3 | 3.6 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b3863 | polA | +1.3 | 2.1 | DNA polymerase I (NCBI) | compare |
| b0092 | ddlB | +1.3 | 7.0 | D-alanylalanine synthetase (NCBI) | compare |
| b2688 | gshA | +1.3 | 6.2 | glutamate--cysteine ligase (NCBI) | compare |
| b3842 | rfaH | +1.3 | 7.1 | transcriptional activator RfaH (NCBI) | compare |
| b1143 | ymfI | +1.3 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b3229 | sspA | +1.2 | 4.5 | stringent starvation protein A (NCBI) | compare |
| b4048 | yjbM | +1.2 | 2.1 | hypothetical protein (NCBI) | compare |
| b1362 | rzpR | +1.2 | 0.9 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1095 | fabF | +1.2 | 6.2 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b4172 | hfq | +1.2 | 1.4 | RNA-binding protein Hfq (NCBI) | compare |
| b4702 | mgtL | +1.2 | 2.3 | regulatory leader peptide for mgtA (NCBI) | compare |
| b2259 | pmrD | +1.2 | 1.5 | polymyxin resistance protein B (VIMSS) | compare |
| b3426 | glpD | +1.1 | 3.3 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b1709 | btuD | +1.1 | 1.1 | vitamin B12-transporter ATPase (NCBI) | compare |
| b4410 | ecnA | +1.1 | 1.6 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b3260 | dusB | +1.1 | 3.9 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b2939 | yqgB | +1.1 | 2.2 | predicted protein (RefSeq) | compare |
| b2512 | yfgL | +1.1 | 4.8 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1524 | yneH | +1.0 | 1.1 | predicted glutaminase (NCBI) | compare |
| b1368 | ynaA | +1.0 | 2.1 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b0438 | clpX | +1.0 | 4.9 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1542 | ydfI | +1.0 | 3.0 | predicted mannonate dehydrogenase (NCBI) | compare |
| b4416 | rybA | +1.0 | 1.8 | unknown RNA (NCBI) | compare |
| b2080 | b2080 | +1.0 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2141 | yohJ | +1.0 | 2.1 | hypothetical protein (NCBI) | compare |
| b1222 | narX | +1.0 | 5.5 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b4450 | arcZ | +1.0 | 2.9 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0957 | ompA | +1.0 | 2.9 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b4169 | amiB | +1.0 | 6.3 | N-acetylmuramoyl-l-alanine amidase II (NCBI) | compare |
| b1661 | cfa | +1.0 | 4.8 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b1418 | cybB | +1.0 | 1.7 | cytochrome b(561) (VIMSS) | compare |
| b4144 | yjeI | +0.9 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b3199 | yrbK | +0.9 | 1.6 | hypothetical protein (NCBI) | compare |
| b1618 | uidR | +0.9 | 2.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1842 | holE | +0.9 | 1.0 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1429 | tehA | +0.9 | 1.6 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b0082 | mraW | +0.9 | 2.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1292 | sapC | +0.9 | 1.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1293 | sapB | +0.9 | 1.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0864 | artP | +0.9 | 1.8 | arginine transporter subunit (NCBI) | compare |
| b4701 | sokX | +0.9 | 0.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b0866 | ybjQ | +0.9 | 1.1 | hypothetical protein (NCBI) | compare |
| b1607 | ydgC | +0.9 | 1.6 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b4609 | ryfD | +0.9 | 2.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b4375 | prfC | +0.9 | 3.7 | peptide chain release factor 3 (NCBI) | compare |
| b1949 | fliQ | +0.9 | 2.4 | flagellar biosynthesis protein Q (NCBI) | compare |
| b3627 | rfaI | +0.9 | 5.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2817 | b2817 | +0.9 | 3.5 | putative amidase (VIMSS) | compare |
| b3404 | envZ | +0.9 | 5.3 | osmolarity sensor protein (NCBI) | compare |
| b3198 | kdsC | +0.9 | 1.7 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3210 | arcB | +0.8 | 4.6 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b4505 | insX | +0.8 | 0.8 | predicted IS protein (RefSeq) | compare |
| b4068 | yjcH | +0.8 | 2.7 | required for glycolate transport, with actP (from data) | compare |
| b1778 | yeaA | +0.8 | 1.9 | methionine sulfoxide reductase B (NCBI) | compare |
| b2317 | dedA | +0.8 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b1920 | fliY | +0.8 | 1.6 | cystine transporter subunit (NCBI) | compare |
| b3396 | mrcA | +0.8 | 7.4 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b1628 | rsxB | +0.8 | 2.9 | electron transport complex protein RnfB (NCBI) | compare |
| b1108 | ycfP | +0.8 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b4546 | ypeB | +0.8 | 1.0 | hypothetical protein (NCBI) | compare |
| b0232 | yafN | +0.8 | 0.7 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0617 | citD | +0.8 | 1.5 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b0051 | ksgA | +0.8 | 2.8 | dimethyladenosine transferase (NCBI) | compare |
| b1150 | ymfR | +0.8 | 0.8 | e14 prophage; predicted protein (NCBI) | compare |
| b2007 | yeeX | +0.8 | 2.7 | conserved protein (RefSeq) | compare |
| b3628 | rfaB | +0.8 | 4.9 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2620 | smpB | +0.8 | 0.8 | SsrA-binding protein (NCBI) | compare |
| b4294 | insA-7 | +0.8 | 1.6 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b2513 | yfgM | +0.8 | 2.6 | hypothetical protein (NCBI) | compare |
| b2637 | yfjT | +0.8 | 1.6 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2946 | yggJ | +0.8 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3150 | yraP | +0.8 | 5.0 | hypothetical protein (NCBI) | compare |
| b3632 | rfaQ | +0.8 | 6.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3194 | yrbE | +0.8 | 4.1 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0596 | entA | +0.8 | 4.5 | 2,3-dihydroxybenzoate-2,3-dehydrogenase (NCBI) | compare |
| b4174 | hflK | +0.8 | 4.8 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1190 | dadX | +0.8 | 3.3 | alanine racemase (NCBI) | compare |
| b3121 | yhaC | +0.8 | 0.4 | hypothetical protein (NCBI) | compare |
| b2285 | nuoE | +0.8 | 1.4 | NADH dehydrogenase subunit E (NCBI) | compare |
| b0695 | kdpD | +0.8 | 3.1 | fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) | compare |
| b4598 | yncL | +0.8 | 1.8 | hypothetical protein (RefSeq) | compare |
| b2279 | nuoK | +0.7 | 0.8 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2168 | fruK | +0.7 | 0.5 | 1-phosphofructokinase (NCBI) | compare |
| b1630 | rsxD | +0.7 | 3.1 | electron transport complex protein RnfD (NCBI) | compare |
| b1085 | b1085 | +0.7 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4468 | glcE | +0.7 | 2.0 | glycolate oxidase FAD binding subunit (NCBI) | compare |
| b0563 | tfaX | +0.7 | 3.3 | DLP12 prophage; predicted protein (RefSeq) | compare |
| b1824 | yobF | +0.7 | 1.3 | hypothetical protein (NCBI) | compare |
| b4552 | yrhC | +0.7 | 0.8 | no description | compare |
| b4220 | ytfM | +0.7 | 5.6 | predicted outer membrane protein and surface antigen (NCBI) | compare |
| b2614 | grpE | +0.7 | 1.5 | heat shock protein (NCBI) | compare |
| b2363 | yfdT | +0.7 | 1.3 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1434 | ydcN | +0.7 | 0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1620 | malI | +0.7 | 2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3034 | nudF | +0.7 | 3.1 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b1007 | b1007 | +0.7 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1823 | cspC | +0.7 | 1.8 | stress protein, member of the CspA-family (NCBI) | compare |
| b4260 | pepA | +0.7 | 4.7 | leucyl aminopeptidase (NCBI) | compare |
| b4221 | ytfN | +0.7 | 6.0 | hypothetical protein (NCBI) | compare |
| b4155 | yjeA | +0.7 | 0.8 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b0796 | ybiH | +0.7 | 4.1 | putative transcriptional regulator (VIMSS) | compare |
| b1904 | yecR | +0.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b2175 | spr | +0.7 | 2.4 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b0979 | appB | +0.7 | 2.8 | cytochrome bd-II oxidase, subunit II (NCBI) | compare |
| b3147 | yraM | +0.7 | 5.2 | hypothetical protein (NCBI) | compare |
| b1467 | narY | +0.7 | 3.0 | nitrate reductase 2 (NRZ), beta subunit (NCBI) | compare |
| b3388 | damX | +0.7 | 5.4 | hypothetical protein (NCBI) | compare |
| b1382 | ynbE | +0.7 | 1.1 | predicted lipoprotein (NCBI) | compare |
| b1271 | yciK | +0.7 | 1.4 | short chain dehydrogenase (NCBI) | compare |
| b1648 | b1648 | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1855 | lpxM | +0.7 | 3.5 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1412 | azoR | +0.7 | 1.9 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b0683 | fur | +0.7 | 0.9 | ferric uptake regulator (NCBI) | compare |
| b0729 | sucD | +0.7 | 1.8 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b2947 | gshB | +0.7 | 2.6 | glutathione synthetase (NCBI) | compare |
| b1514 | lsrC | +0.7 | 1.1 | AI2 transporter (NCBI) | compare |
| b3035 | tolC | +0.6 | 3.4 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b4095 | phnM | +0.6 | 2.7 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1591 | b1591 | +0.6 | 1.5 | putative oxidoreductase component (VIMSS) | compare |
| b3107 | yhaL | +0.6 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2700 | ygaD | +0.6 | 3.2 | competence damage-inducible protein A (NCBI) | compare |
| b1548 | nohA | +0.6 | 0.8 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b0784 | moaD | +0.6 | 1.5 | molybdopterin synthase, small subunit (NCBI) | compare |
| b1186 | nhaB | +0.6 | 3.2 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b1660 | ydhC | +0.6 | 2.8 | predicted transporter (NCBI) | compare |
| b4594 | ymgJ | +0.6 | 1.4 | hypothetical protein (RefSeq) | compare |
| b0423 | thiI | +0.6 | 2.9 | thiamine biosynthesis protein ThiI (NCBI) | compare |
| b3789 | rffH | +0.6 | 3.9 | glucose-1-phosphate thymidylyltransferase (NCBI) | compare |
| b2948 | yqgE | +0.6 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4568 | ytjA | +0.6 | 1.2 | predicted protein (RefSeq) | compare |
| b1013 | ycdC | +0.6 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1515 | lsrD | +0.6 | 2.0 | AI2 transporter (NCBI) | compare |
| b2083 | yegZ | +0.6 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2114 | metG | +0.6 | 0.9 | methionyl-tRNA synthetase (NCBI) | compare |
| b4325 | yjiC | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1324 | tpx | +0.6 | 2.4 | thiol peroxidase (NCBI) | compare |
| b1299 | puuR | +0.6 | 2.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2528 | iscA | +0.6 | 1.0 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b0381 | ddlA | +0.6 | 2.9 | D-alanylalanine synthetase (NCBI) | compare |
| b4431 | rprA | +0.6 | 1.3 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b0226 | dinJ | +0.6 | 2.0 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b4589 | ylcI | +0.6 | 1.1 | hypothetical protein (RefSeq) | compare |
| b1741 | ydjQ | +0.6 | 1.9 | endonuclease of nucleotide excision repair (NCBI) | compare |
| b2209 | eco | +0.6 | 1.0 | ecotin precursor (NCBI) | compare |