| | gene | name | fitness | t score | description | |
|---|
| b3035 | tolC | +4.1 | 28.1 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b2904 | gcvH | +4.0 | 11.4 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +3.8 | 34.4 | glycine dehydrogenase (NCBI) | compare |
| b2144 | sanA | +3.7 | 28.7 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +3.7 | 25.7 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2572 | rseA | +3.7 | 6.2 | anti-sigma factor (NCBI) | compare |
| b3405 | ompR | +3.5 | 13.4 | osmolarity response regulator (NCBI) | compare |
| b3206 | npr | +3.4 | 17.8 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2905 | gcvT | +3.4 | 21.3 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1830 | prc | +3.2 | 16.2 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0178 | hlpA | +3.2 | 12.1 | periplasmic chaperone (NCBI) | compare |
| b0632 | dacA | +3.2 | 19.5 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b3911 | cpxA | +3.1 | 22.7 | two-component sensor protein (NCBI) | compare |
| b0437 | clpP | +3.1 | 16.6 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1677 | lpp | +3.1 | 7.4 | murein lipoprotein (NCBI) | compare |
| b3630 | rfaP | +3.0 | 23.3 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3620 | rfaF | +2.9 | 18.0 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b0053 | surA | +2.8 | 18.1 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b0438 | clpX | +2.8 | 14.9 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3784 | rfe | +2.7 | 24.3 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3052 | rfaE | +2.6 | 12.1 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b2017 | yefM | +2.6 | 5.3 | orf, hypothetical protein (VIMSS) | compare |
| b3404 | envZ | +2.6 | 15.5 | osmolarity sensor protein (NCBI) | compare |
| b0222 | lpcA | +2.6 | 9.7 | phosphoheptose isomerase (NCBI) | compare |
| b3621 | rfaC | +2.6 | 14.6 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3631 | rfaG | +2.6 | 22.1 | glucosyltransferase I (NCBI) | compare |
| b3619 | rfaD | +2.6 | 12.7 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b2064 | asmA | +2.5 | 10.9 | predicted assembly protein (NCBI) | compare |
| b3842 | rfaH | +2.5 | 15.2 | transcriptional activator RfaH (NCBI) | compare |
| b3199 | yrbK | +2.5 | 8.1 | hypothetical protein (NCBI) | compare |
| b3787 | rffD | +2.5 | 19.4 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b2951 | yggS | +2.5 | 12.2 | predicted enzyme (NCBI) | compare |
| b3786 | rffE | +2.4 | 19.4 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b2808 | gcvA | +2.3 | 7.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4042 | dgkA | +2.3 | 7.2 | diacylglycerol kinase (NCBI) | compare |
| b3261 | fis | +2.3 | 7.8 | DNA-binding protein Fis (NCBI) | compare |
| b3794 | rffM | +2.3 | 14.3 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2188 | yejM | +2.2 | 10.8 | predicted hydrolase, inner membrane (NCBI) | compare |
| b3163 | nlpI | +2.0 | 7.5 | hypothetical protein (NCBI) | compare |
| b1236 | galU | +2.0 | 10.0 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1863 | ruvC | +2.0 | 5.1 | Holliday junction resolvase (NCBI) | compare |
| b1860 | ruvB | +2.0 | 2.2 | Holliday junction DNA helicase B (NCBI) | compare |
| b2742 | nlpD | +1.9 | 9.2 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1861 | ruvA | +1.9 | 3.4 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b3082 | ygjM | +1.9 | 2.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3979 | thrT | +1.9 | 1.0 | tRNA-Thr (NCBI) | compare |
| b3150 | yraP | +1.8 | 10.1 | hypothetical protein (NCBI) | compare |
| b3920 | yiiQ | +1.8 | 10.0 | hypothetical protein (NCBI) | compare |
| b4552 | yrhC | +1.7 | 2.1 | no description | compare |
| b0059 | hepA | +1.7 | 14.0 | ATP-dependent helicase HepA (NCBI) | compare |
| b2830 | nudH | +1.7 | 3.8 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3790 | rffC | +1.7 | 7.8 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4169 | amiB | +1.7 | 11.8 | N-acetylmuramoyl-l-alanine amidase II (NCBI) | compare |
| b4000 | hupA | +1.7 | 8.5 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0677 | nagA | +1.7 | 7.7 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b0232 | yafN | +1.6 | 2.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2175 | spr | +1.6 | 5.6 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b3791 | rffA | +1.6 | 9.5 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b3021 | ygiT | +1.6 | 3.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3387 | dam | +1.6 | 11.5 | DNA adenine methylase (NCBI) | compare |
| b3341 | rpsG | +1.6 | 2.0 | 30S ribosomal protein S7 (NCBI) | compare |
| b2897 | ygfY | +1.6 | 4.9 | hypothetical protein (NCBI) | compare |
| b0695 | kdpD | +1.6 | 5.6 | fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) | compare |
| b1855 | lpxM | +1.5 | 4.6 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4458 | oxyS | +1.5 | 2.4 | global regulatory RNA (NCBI) | compare |
| b4203 | rplI | +1.5 | 7.1 | 50S ribosomal protein L9 (NCBI) | compare |
| b3627 | rfaI | +1.5 | 10.1 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1765 | ydjA | +1.5 | 1.6 | predicted oxidoreductase (NCBI) | compare |
| b3164 | pnp | +1.5 | 2.8 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b4481 | rffT | +1.4 | 7.2 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3778 | rep | +1.4 | 8.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3529 | yhjK | +1.4 | 10.7 | predicted diguanylate cyclase (RefSeq) | compare |
| b3655 | yicH | +1.4 | 12.0 | hypothetical protein (NCBI) | compare |
| b1291 | sapD | +1.4 | 2.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3806 | cyaA | +1.4 | 6.3 | adenylate cyclase (NCBI) | compare |
| b4590 | ybfK | +1.4 | 2.8 | hypothetical protein (RefSeq) | compare |
| b3935 | priA | +1.3 | 2.1 | primosome assembly protein PriA (NCBI) | compare |
| b0092 | ddlB | +1.3 | 5.7 | D-alanylalanine synthetase (NCBI) | compare |
| b0759 | galE | +1.3 | 6.6 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b4451 | ryhB | +1.3 | 2.9 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1147 | ymfL | +1.2 | 1.6 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b3632 | rfaQ | +1.2 | 10.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3609 | secB | +1.2 | 3.5 | export protein SecB (NCBI) | compare |
| b1575 | dicB | +1.2 | 1.4 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b3977 | tyrU | +1.1 | 1.4 | tRNA-Tyr (NCBI) | compare |
| b0440 | hupB | +1.1 | 4.0 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b4702 | mgtL | +1.1 | 1.4 | regulatory leader peptide for mgtA (NCBI) | compare |
| b2259 | pmrD | +1.1 | 1.3 | polymyxin resistance protein B (VIMSS) | compare |
| b2516 | yfgA | +1.1 | 4.9 | hypothetical protein (NCBI) | compare |
| b4100 | phnH | +1.1 | 3.8 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b3785 | wzzE | +1.1 | 7.2 | putative transport protein (VIMSS) | compare |
| b3229 | sspA | +1.0 | 2.9 | stringent starvation protein A (NCBI) | compare |
| b4545 | ypdJ | +1.0 | 2.4 | no description | compare |
| b2688 | gshA | +1.0 | 4.5 | glutamate--cysteine ligase (NCBI) | compare |
| b1085 | b1085 | +1.0 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1874 | cutC | +1.0 | 1.9 | copper homeostasis protein (NCBI) | compare |
| b1273 | yciN | +1.0 | 1.9 | hypothetical protein (NCBI) | compare |
| b2494 | yfgC | +1.0 | 6.5 | predicted peptidase (NCBI) | compare |
| b2817 | b2817 | +1.0 | 3.3 | putative amidase (VIMSS) | compare |
| b2617 | smpA | +1.0 | 1.9 | small membrane protein A (VIMSS) | compare |
| b0882 | clpA | +0.9 | 5.7 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b3260 | dusB | +0.9 | 3.7 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b1143 | ymfI | +0.9 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4646 | yrdE | +0.9 | 2.8 | no description | compare |
| b0957 | ompA | +0.9 | 2.9 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b0434 | yajG | +0.9 | 4.7 | putative polymerase/proteinase (VIMSS) | compare |
| b3181 | greA | +0.9 | 3.1 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1164 | ycgZ | +0.9 | 1.5 | hypothetical protein (NCBI) | compare |
| b1642 | slyA | +0.9 | 1.8 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3628 | rfaB | +0.9 | 5.6 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1111 | ycfQ | +0.9 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b3484 | yhhI | +0.9 | 2.7 | predicted transposase (NCBI) | compare |
| b1609 | rstB | +0.9 | 3.4 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b1222 | narX | +0.9 | 3.1 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1708 | nlpC | +0.9 | 3.3 | predicted lipoprotein (NCBI) | compare |
| b1620 | malI | +0.9 | 1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0729 | sucD | +0.9 | 3.9 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b0627 | tatE | +0.9 | 1.4 | twin arginine translocase protein E (NCBI) | compare |
| b3426 | glpD | +0.9 | 2.5 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b1293 | sapB | +0.9 | 1.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0542 | renD | +0.9 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b0803 | ybiI | +0.9 | 3.1 | hypothetical protein (NCBI) | compare |
| b3643 | rph | +0.8 | 3.3 | ribonuclease PH (NCBI) | compare |
| b2362 | yfdS | +0.8 | 2.7 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1936 | intG | +0.8 | 1.3 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1728 | ydjM | +0.8 | 1.6 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b2183 | rsuA | +0.8 | 2.5 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b1278 | pgpB | +0.8 | 2.6 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b3250 | mreC | +0.8 | 1.2 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b2313 | cvpA | +0.8 | 1.3 | membrane protein required for colicin V production (NCBI) | compare |
| b3472 | b3472 | +0.8 | 4.7 | orf, hypothetical protein (VIMSS) | compare |
| b1359 | ydaU | +0.8 | 1.5 | Rac prophage; conserved protein (NCBI) | compare |
| b1518 | lsrG | +0.8 | 1.6 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b3527 | yhjJ | +0.8 | 6.8 | predicted zinc-dependent peptidase (NCBI) | compare |
| b0929 | ompF | +0.8 | 2.6 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b2963 | mltC | +0.8 | 5.9 | membrane-bound lytic murein transglycosylase C (VIMSS) | compare |
| b1606 | folM | +0.8 | 4.3 | short chain dehydrogenase (NCBI) | compare |
| b4441 | glmY | +0.8 | 1.5 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b3652 | recG | +0.8 | 4.3 | ATP-dependent DNA helicase (NCBI) | compare |
| b2947 | gshB | +0.8 | 3.0 | glutathione synthetase (NCBI) | compare |
| b2288 | nuoA | +0.8 | 1.4 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0018 | mokC | +0.8 | 1.1 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1824 | yobF | +0.8 | 2.2 | hypothetical protein (NCBI) | compare |
| b3625 | rfaY | +0.8 | 3.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2894 | xerD | +0.8 | 0.9 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b0082 | mraW | +0.8 | 3.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0686 | ybfF | +0.8 | 3.4 | hypothetical protein (NCBI) | compare |
| b1075 | flgD | +0.8 | 1.8 | flagellar basal body rod modification protein D (NCBI) | compare |
| b2809 | b2809 | +0.8 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2597 | yfiA | +0.7 | 1.6 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b3351 | kefG | +0.7 | 3.8 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b3183 | obgE | +0.7 | 0.5 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b1271 | yciK | +0.7 | 2.1 | short chain dehydrogenase (NCBI) | compare |
| b2052 | fcl | +0.7 | 2.4 | bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) | compare |
| b3195 | yrbF | +0.7 | 4.4 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4438 | cyaR | +0.7 | 1.9 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b2722 | hycD | +0.7 | 3.3 | hydrogenase 3, membrane subunit (NCBI) | compare |
| b0560 | nohB | +0.7 | 2.2 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b2420 | yfeS | +0.7 | 2.9 | hypothetical protein (NCBI) | compare |
| b1095 | fabF | +0.7 | 3.5 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1918 | yecS | +0.7 | 2.3 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2104 | thiM | +0.7 | 1.2 | hydroxyethylthiazole kinase (NCBI) | compare |
| b3149 | yraO | +0.7 | 3.4 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b0926 | ycbK | +0.7 | 3.5 | hypothetical protein (NCBI) | compare |
| b2209 | eco | +0.7 | 1.2 | ecotin precursor (NCBI) | compare |
| b2457 | cchA | +0.7 | 1.7 | detox protein (VIMSS) | compare |
| b4461 | yfjD | +0.7 | 3.6 | predicted inner membrane protein (RefSeq) | compare |
| b0226 | dinJ | +0.7 | 1.8 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0633 | rlpA | +0.7 | 3.9 | minor lipoprotein (NCBI) | compare |
| b1755 | ynjC | +0.7 | 2.7 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b3102 | yqjG | +0.7 | 1.5 | predicted S-transferase (NCBI) | compare |
| b3194 | yrbE | +0.7 | 4.8 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1519 | tam | +0.7 | 1.6 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b2419 | yfeK | +0.7 | 1.1 | hypothetical protein (NCBI) | compare |
| b1837 | yebW | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0296 | ykgM | +0.7 | 1.5 | 50S ribosomal protein L31 (NCBI) | compare |
| b0728 | sucC | +0.7 | 3.0 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b2912 | ygfA | +0.7 | 1.6 | putative ligase (VIMSS) | compare |
| b1306 | pspC | +0.7 | 3.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b4594 | ymgJ | +0.7 | 1.1 | hypothetical protein (RefSeq) | compare |
| b1097 | yceG | +0.6 | 2.4 | predicted aminodeoxychorismate lyase (NCBI) | compare |
| b1380 | ldhA | +0.6 | 1.5 | D-lactate dehydrogenase (NCBI) | compare |
| b1752 | ydjZ | +0.6 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b2134 | pbpG | +0.6 | 4.3 | penicillin-binding protein 7 (VIMSS) | compare |
| b3813 | uvrD | +0.6 | 4.9 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b3350 | kefB | +0.6 | 5.2 | glutathione-regulated potassium-efflux system protein (NCBI) | compare |
| b1358 | ydaT | +0.6 | 0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b3443 | yrhA | +0.6 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b4543 | ypaA | +0.6 | 1.5 | predicted protein (NCBI) | compare |
| b2738 | ygbL | +0.6 | 3.0 | hypothetical protein (NCBI) | compare |
| b1659 | ydhB | +0.6 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3096 | yqjB | +0.6 | 2.4 | hypothetical protein (NCBI) | compare |
| b2910 | zapA | +0.6 | 2.1 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b3928 | yiiU | +0.6 | 2.5 | hypothetical protein (NCBI) | compare |
| b2236 | yfaE | +0.6 | 1.0 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b4202 | rpsR | +0.6 | 0.8 | 30S ribosomal protein S18 (NCBI) | compare |
| b3836 | b3836 | +0.6 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4551 | yheV | +0.6 | 1.4 | hypothetical protein (NCBI) | compare |
| b0998 | torD | +0.6 | 0.7 | chaperone protein TorD (NCBI) | compare |
| b1066 | rimJ | +0.6 | 2.8 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | compare |