Experiment set3S939 for Rhodanobacter sp. FW510-T8

Compare to:

NLDM_defined_nocarbon with D-Glucose

200 most important genes:

  gene name fitness t score description  
OKGIIK_13565 thrB -3.9 -2.7 homoserine kinase compare
OKGIIK_13590 leuD -3.9 -4.6 3-isopropylmalate dehydratase small subunit compare
OKGIIK_04965 hisH -3.8 -6.4 imidazole glycerol phosphate synthase subunit HisH compare
OKGIIK_12280 trpC -3.8 -4.5 indole-3-glycerol phosphate synthase TrpC compare
OKGIIK_13610 ilvB -3.8 -8.0 biosynthetic-type acetolactate synthase large subunit compare
OKGIIK_04970 hisA -3.7 -5.6 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKGIIK_04955 hisC -3.7 -10.2 histidinol-phosphate transaminase compare
OKGIIK_04950 hisD -3.6 -12.4 histidinol dehydrogenase compare
OKGIIK_11830 metF -3.6 -13.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
OKGIIK_06910 serC -3.6 -12.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKGIIK_09190 -3.5 -12.8 Methionine synthase compare
OKGIIK_13595 leuB -3.5 -14.3 3-isopropylmalate dehydrogenase compare
OKGIIK_01515 metB -3.5 -13.3 cystathionine gamma-synthase compare
OKGIIK_09415 proA -3.5 -11.1 glutamate-5-semialdehyde dehydrogenase compare
OKGIIK_15205 -3.5 -4.1 Glutamate synthase compare
OKGIIK_01060 gap -3.5 -4.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_01780 -3.5 -6.2 NAD+ synthase compare
OKGIIK_16835 aroQ -3.5 -5.7 type II 3-dehydroquinate dehydratase compare
OKGIIK_13585 leuC -3.4 -8.0 3-isopropylmalate dehydratase large subunit compare
OKGIIK_12285 trpD -3.4 -4.7 anthranilate phosphoribosyltransferase compare
OKGIIK_13570 thrC -3.4 -2.4 threonine synthase compare
OKGIIK_11820 ppc -3.4 -17.6 phosphoenolpyruvate carboxylase compare
OKGIIK_09480 argF -3.4 -12.4 N-acetylornithine carbamoyltransferase compare
OKGIIK_07005 asnB -3.4 -9.4 asparagine synthase B compare
OKGIIK_06915 pheA -3.4 -8.9 prephenate dehydratase compare
OKGIIK_09440 argB -3.4 -9.2 acetylglutamate kinase compare
OKGIIK_09445 -3.4 -6.7 acetylornithine deacetylase compare
OKGIIK_04980 hisIE -3.4 -8.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OKGIIK_11440 glyA -3.3 -12.0 serine hydroxymethyltransferase compare
OKGIIK_04960 hisB -3.3 -6.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OKGIIK_09185 metH1 -3.3 -10.3 5-methyltetrahydrofolate--homocysteine methyltransferase compare
OKGIIK_05560 -3.3 -3.9 Sporulation protein compare
OKGIIK_15200 -3.3 -23.2 Glutamate synthase subunit alpha compare
OKGIIK_13605 ilvC -3.3 -10.5 ketol-acid reductoisomerase compare
OKGIIK_05570 purF -3.3 -5.0 amidophosphoribosyltransferase compare
OKGIIK_07300 -3.3 -2.3 carbamoyl phosphate synthase small subunit compare
OKGIIK_09435 argC -3.3 -9.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
OKGIIK_09465 argG -3.3 -10.7 argininosuccinate synthase compare
OKGIIK_13575 leuA -3.3 -6.9 2-isopropylmalate synthase compare
OKGIIK_03645 htpX -3.3 -5.8 protease HtpX compare
OKGIIK_02955 -3.2 -6.1 CBS domain-containing protein compare
OKGIIK_05875 -3.2 -9.8 Poly(3-hydroxyalkanoate) polymerase subunit PhaE compare
OKGIIK_12405 trpE -3.2 -14.9 anthranilate synthase component I compare
OKGIIK_11135 proC -3.2 -4.8 pyrroline-5-carboxylate reductase compare
OKGIIK_09995 yajC -3.2 -3.0 preprotein translocase subunit YajC compare
OKGIIK_05630 elaC -3.2 -6.2 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_11600 -3.1 -3.0 ATP:cob(I)alamin adenosyltransferase compare
OKGIIK_13600 ilvD -3.1 -6.9 dihydroxy-acid dehydratase compare
OKGIIK_13580 ilvE -3.1 -11.8 branched-chain amino acid transaminase compare
OKGIIK_01510 mET2 -3.1 -10.4 homoserine O-succinyltransferase compare
OKGIIK_12095 ridA -3.1 -10.7 reactive intermediate/imine deaminase compare
OKGIIK_15365 aroE -3.1 -10.0 shikimate dehydrogenase compare
OKGIIK_04835 -3.1 -5.8 phosphoribosylanthranilate isomerase compare
OKGIIK_11180 -3.1 -6.5 Shikimate kinase compare
OKGIIK_11505 purL -3.1 -3.6 phosphoribosylformylglycinamidine synthase compare
OKGIIK_02350 tlyC -3.1 -10.2 Hemolysin-related protein, contains CBS domains, UPF0053 family compare
OKGIIK_12290 pabA -3.1 -5.8 anthranilate/aminodeoxychorismate synthase component II compare
OKGIIK_06870 hflD -3.1 -5.1 high frequency lysogenization protein HflD compare
OKGIIK_05975 lysR -3.1 -13.3 CysB family transcriptional regulator compare
OKGIIK_01110 pgk -3.0 -6.7 phosphoglycerate kinase compare
OKGIIK_06920 aroA -3.0 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_02315 purM -3.0 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_03000 degQ -3.0 -8.2 peptidase S1 compare
OKGIIK_02170 relA -3.0 -15.5 GTP diphosphokinase compare
OKGIIK_04850 trpA -3.0 -5.2 tryptophan synthase subunit alpha compare
OKGIIK_02120 lysA -3.0 -14.4 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
OKGIIK_07250 lapB -2.9 -8.8 lipopolysaccharide assembly protein LapB compare
OKGIIK_16060 gpmA -2.9 -4.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_12965 -2.9 -7.9 glutamate--cysteine ligase compare
OKGIIK_10080 ihfA -2.9 -3.4 integration host factor subunit alpha compare
OKGIIK_01255 fixB -2.9 -9.9 electron transfer flavoprotein subunit alpha compare
OKGIIK_09875 glpG -2.8 -13.8 DUF1751 domain-containing protein compare
OKGIIK_11005 suhB -2.8 -4.2 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_07900 rpoE -2.8 -9.0 RNA polymerase sigma factor RpoE compare
OKGIIK_10055 serA -2.8 -6.1 phosphoglycerate dehydrogenase compare
OKGIIK_16340 -2.8 -9.0 pteridine reductase compare
OKGIIK_13750 purD -2.8 -4.1 phosphoribosylamine--glycine ligase compare
OKGIIK_05980 cysG -2.8 -7.0 siroheme synthase CysG compare
OKGIIK_04845 trpB -2.8 -11.4 tryptophan synthase subunit beta compare
OKGIIK_10050 glcD -2.7 -15.2 FAD-binding oxidoreductase compare
OKGIIK_12595 aceF -2.7 -6.1 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_09430 argH -2.7 -6.6 argininosuccinate lyase compare
OKGIIK_01285 fixX -2.7 -10.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
OKGIIK_10175 rseP -2.7 -1.8 RIP metalloprotease RseP compare
OKGIIK_05880 phaC -2.7 -13.7 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
OKGIIK_02265 -2.6 -10.4 RNA polymerase factor sigma-54 compare
OKGIIK_05970 cysH -2.6 -11.2 phosphoadenylyl-sulfate reductase compare
OKGIIK_04975 hisF -2.6 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
OKGIIK_01295 cysD -2.5 -12.0 sulfate adenylyltransferase subunit CysD compare
OKGIIK_01300 -2.5 -19.2 Multifunctional fusion protein compare
OKGIIK_05965 cysI -2.5 -14.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OKGIIK_09515 gph -2.5 -6.9 phosphoglycolate phosphatase compare
OKGIIK_05840 rimP -2.5 -3.1 ribosome maturation protein RimP compare
OKGIIK_04805 aroC -2.5 -6.4 chorismate synthase compare
OKGIIK_06585 ompA -2.5 -12.5 flagellar motor protein MotB compare
OKGIIK_15650 ftsN -2.4 -5.0 sporulation protein compare
OKGIIK_14345 nagA -2.4 -8.2 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_15065 phhA -2.4 -15.0 phenylalanine 4-monooxygenase compare
OKGIIK_11415 ldcA -2.4 -5.0 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_03430 -2.4 -7.3 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_01845 kup -2.4 -4.4 potassium uptake protein compare
OKGIIK_15045 -2.4 -4.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_12720 aspB -2.4 -14.3 aminotransferase compare
OKGIIK_02250 rapZ -2.3 -9.9 RNase adapter RapZ compare
OKGIIK_11115 fiu -2.3 -2.7 Outer membrane receptor for monomeric catechols compare
OKGIIK_04945 hisG -2.3 -2.2 ATP phosphoribosyltransferase compare
OKGIIK_11235 pssA -2.3 -3.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_09975 -2.3 -10.9 Aminoglycoside phosphotransferase compare
OKGIIK_09420 proB -2.3 -6.3 glutamate 5-kinase compare
OKGIIK_02260 raiA -2.3 -12.7 ribosomal subunit interface protein compare
OKGIIK_09425 -2.3 -5.6 Cupin compare
OKGIIK_13625 ubiA -2.2 -1.5 4-hydroxybenzoate octaprenyltransferase compare
OKGIIK_13620 ilvA -2.2 -10.5 threonine ammonia-lyase, biosynthetic compare
OKGIIK_16330 folK -2.2 -2.8 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKGIIK_00090 -2.2 -3.2 serine-type D-Ala-D-Ala carboxypeptidase compare
OKGIIK_05960 -2.2 -9.8 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
OKGIIK_01310 gcvH -2.2 -3.5 glycine cleavage system protein GcvH compare
OKGIIK_12705 pta -2.2 -4.6 NADP-dependent malic enzyme compare
OKGIIK_07375 smpB -2.1 -2.4 SsrA-binding protein SmpB compare
OKGIIK_07040 smc -2.1 -3.4 chromosome segregation protein SMC compare
OKGIIK_11075 gshB -2.1 -6.7 glutathione synthase compare
OKGIIK_01080 fba1 -2.1 -12.2 fructose-bisphosphate aldolase class I compare
OKGIIK_03310 minC -2.1 -2.7 septum site-determining protein MinC compare
OKGIIK_06755 rnr -2.0 -14.0 ribonuclease R compare
OKGIIK_16805 purH -2.0 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKGIIK_07295 carB -2.0 -6.2 carbamoyl-phosphate synthase large subunit compare
OKGIIK_09225 -2.0 -4.6 RecBCD enzyme subunit RecC compare
OKGIIK_12995 glk -2.0 -8.0 glucokinase compare
OKGIIK_01155 cpsB -2.0 -3.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_07895 -2.0 -4.2 Anti-anti-sigma factor compare
OKGIIK_08100 -2.0 -7.9 Peptidase M23 compare
OKGIIK_07400 -2.0 -2.1 4a-hydroxytetrahydrobiopterin dehydratase compare
OKGIIK_06555 ahpC -1.9 -5.6 alkyl hydroperoxide reductase subunit C compare
OKGIIK_15735 23S_rrna -1.9 -1.8 23S ribosomal RNA compare
OKGIIK_09230 -1.9 -2.8 RecBCD enzyme subunit RecB compare
OKGIIK_06645 hflC -1.9 -8.5 protease modulator HflC compare
OKGIIK_07310 -1.9 -11.0 Sodium/calcium exchanger protein compare
OKGIIK_00745 aceF -1.9 -2.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_16950 tolC -1.8 -12.4 Outer membrane protein TolC compare
OKGIIK_10805 abrB -1.8 -2.6 AbrB family transcriptional regulator compare
OKGIIK_01260 fixA -1.8 -0.9 EtfB protein compare
OKGIIK_01830 tACO1 -1.8 -2.6 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_13020 secB -1.8 -2.7 protein-export chaperone SecB compare
OKGIIK_11595 -1.7 -10.0 Membrane protein compare
OKGIIK_15705 -1.7 -6.5 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_08010 -1.7 -9.2 Peptidylprolyl isomerase compare
OKGIIK_12110 -1.7 -12.4 ABC transporter compare
OKGIIK_15520 pgi -1.7 -5.9 glucose-6-phosphate isomerase compare
OKGIIK_13560 thrA -1.6 -5.9 homoserine dehydrogenase compare
OKGIIK_10125 glnD -1.6 -2.4 [protein-PII] uridylyltransferase compare
OKGIIK_12590 lpdA -1.6 -4.4 dihydrolipoyl dehydrogenase compare
OKGIIK_07255 -1.6 -3.2 LapA-dom domain-containing protein compare
OKGIIK_08915 -1.6 -2.0 hypothetical protein compare
OKGIIK_11390 pgpA -1.6 -4.3 Phosphatidylglycerophosphatase A compare
OKGIIK_06740 gcvP2 -1.6 -9.3 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_11965 mscL -1.5 -1.1 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_01095 tkt -1.5 -5.8 transketolase compare
OKGIIK_13195 -1.5 -9.3 Aminotransferase compare
OKGIIK_06435 scpA -1.5 -4.5 Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family compare
OKGIIK_03305 minD -1.5 -2.1 septum site-determining protein MinD compare
OKGIIK_16680 natA -1.5 -5.9 ABC transporter compare
OKGIIK_02255 hprK -1.5 -8.7 HPr(Ser) kinase/phosphatase compare
OKGIIK_01800 clpB -1.5 -9.9 ATP-dependent chaperone ClpB compare
OKGIIK_15695 -1.4 -6.4 MFS transporter compare
OKGIIK_09325 -1.4 -2.7 Enoyl-CoA hydratase compare
OKGIIK_12700 aceE -1.4 -10.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_01160 rfbD -1.4 -4.6 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_12320 -1.4 -7.4 AbiEi-3-N domain-containing protein compare
OKGIIK_15610 -1.4 -5.9 EH domain-containing protein compare
OKGIIK_15325 xerC -1.4 -2.4 tyrosine recombinase XerC compare
OKGIIK_06580 prpD -1.4 -5.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_06640 hflK -1.3 -6.6 FtsH protease activity modulator HflK compare
OKGIIK_16745 pspE -1.3 -5.9 rhodanese-like domain-containing protein compare
OKGIIK_03635 fabG -1.3 -8.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
OKGIIK_02245 manX -1.3 -7.2 PTS fructose IIA subunit family protein compare
OKGIIK_14465 ntrC -1.3 -1.5 nitrogen regulation protein NR(I) compare
OKGIIK_14985 -1.3 -3.5 hypothetical protein compare
OKGIIK_16685 natB -1.3 -6.6 ABC transporter permease compare
OKGIIK_12120 -1.3 -7.9 Toluene tolerance protein compare
OKGIIK_02825 -1.3 -3.9 Cobyrinic acid a,c-diamide synthase compare
OKGIIK_11030 -1.3 -8.7 P63C domain-containing protein compare
OKGIIK_11370 -1.3 -2.9 Hemin transporter compare
OKGIIK_16785 polA -1.3 -7.6 DNA polymerase I compare
OKGIIK_01240 -1.2 -4.5 EamA domain-containing protein compare
OKGIIK_03795 -1.2 -9.4 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_00165 -1.2 -7.2 NrdJb compare
OKGIIK_16565 mgtA -1.2 -4.6 magnesium-translocating P-type ATPase compare
OKGIIK_01165 rfbC -1.2 -4.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_09410 lolD -1.2 -2.2 ABC-type lipoprotein export system, ATPase component compare
OKGIIK_09925 nirD -1.2 -7.0 benzene 1,2-dioxygenase compare
OKGIIK_02070 -1.2 -2.8 hypothetical protein compare
OKGIIK_12130 mlaE -1.2 -4.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_14470 -1.2 -2.8 PAS domain-containing sensor histidine kinase compare
OKGIIK_10995 cysQ -1.2 -6.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
OKGIIK_00110 ctpA -1.1 -4.8 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_06965 -1.1 -5.4 conjugal transfer protein TraB compare
OKGIIK_00795 ycgM -1.1 -5.7 2-keto-4-pentenoate hydratase compare
OKGIIK_09500 dksA -1.1 -2.9 RNA polymerase-binding protein DksA compare
OKGIIK_09455 -1.1 -3.4 GNAT family acetyltransferase compare
OKGIIK_11625 rsmA -1.1 -8.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare


Specific Phenotypes

For 7 genes in this experiment

For no nutrient control D-Glucose in Rhodanobacter sp. FW510-T8

For no nutrient control D-Glucose across organisms