Experiment set3S935 for Rhodanobacter sp. FW510-T8

Compare to:

NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM

200 most important genes:

  gene name fitness t score description  
OKGIIK_13590 leuD -4.1 -4.0 3-isopropylmalate dehydratase small subunit compare
OKGIIK_04955 hisC -4.0 -6.1 histidinol-phosphate transaminase compare
OKGIIK_09445 -3.9 -5.3 acetylornithine deacetylase compare
OKGIIK_11135 proC -3.8 -2.6 pyrroline-5-carboxylate reductase compare
OKGIIK_04960 hisB -3.7 -6.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OKGIIK_11235 pssA -3.6 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_04850 trpA -3.5 -3.4 tryptophan synthase subunit alpha compare
OKGIIK_13565 thrB -3.4 -4.7 homoserine kinase compare
OKGIIK_04965 hisH -3.4 -7.8 imidazole glycerol phosphate synthase subunit HisH compare
OKGIIK_04970 hisA -3.4 -6.8 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKGIIK_09415 proA -3.3 -10.6 glutamate-5-semialdehyde dehydrogenase compare
OKGIIK_07005 asnB -3.3 -8.8 asparagine synthase B compare
OKGIIK_06910 serC -3.3 -12.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKGIIK_02955 -3.3 -5.5 CBS domain-containing protein compare
OKGIIK_13600 ilvD -3.3 -5.9 dihydroxy-acid dehydratase compare
OKGIIK_01780 -3.3 -6.6 NAD+ synthase compare
OKGIIK_13610 ilvB -3.2 -11.7 biosynthetic-type acetolactate synthase large subunit compare
OKGIIK_06915 pheA -3.2 -8.2 prephenate dehydratase compare
OKGIIK_13580 ilvE -3.2 -12.0 branched-chain amino acid transaminase compare
OKGIIK_13605 ilvC -3.2 -9.5 ketol-acid reductoisomerase compare
OKGIIK_09435 argC -3.2 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
OKGIIK_13585 leuC -3.2 -9.2 3-isopropylmalate dehydratase large subunit compare
OKGIIK_02350 tlyC -3.1 -9.4 Hemolysin-related protein, contains CBS domains, UPF0053 family compare
OKGIIK_12095 ridA -3.1 -11.1 reactive intermediate/imine deaminase compare
OKGIIK_13595 leuB -3.1 -14.5 3-isopropylmalate dehydrogenase compare
OKGIIK_15365 aroE -3.1 -9.4 shikimate dehydrogenase compare
OKGIIK_01110 pgk -3.1 -6.5 phosphoglycerate kinase compare
OKGIIK_09465 argG -3.1 -10.6 argininosuccinate synthase compare
OKGIIK_04845 trpB -3.1 -9.2 tryptophan synthase subunit beta compare
OKGIIK_12285 trpD -3.0 -5.0 anthranilate phosphoribosyltransferase compare
OKGIIK_04950 hisD -3.0 -13.4 histidinol dehydrogenase compare
OKGIIK_04805 aroC -3.0 -4.6 chorismate synthase compare
OKGIIK_09480 argF -3.0 -13.9 N-acetylornithine carbamoyltransferase compare
OKGIIK_11505 purL -3.0 -3.5 phosphoribosylformylglycinamidine synthase compare
OKGIIK_04980 hisIE -3.0 -10.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OKGIIK_11820 ppc -3.0 -17.6 phosphoenolpyruvate carboxylase compare
OKGIIK_01060 gap -3.0 -6.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_13575 leuA -2.9 -6.7 2-isopropylmalate synthase compare
OKGIIK_03000 degQ -2.9 -8.5 peptidase S1 compare
OKGIIK_03645 htpX -2.9 -5.2 protease HtpX compare
OKGIIK_11440 glyA -2.9 -11.3 serine hydroxymethyltransferase compare
OKGIIK_02170 relA -2.9 -15.4 GTP diphosphokinase compare
OKGIIK_10080 ihfA -2.9 -3.3 integration host factor subunit alpha compare
OKGIIK_06585 ompA -2.9 -10.9 flagellar motor protein MotB compare
OKGIIK_03430 -2.8 -6.2 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_12405 trpE -2.8 -15.6 anthranilate synthase component I compare
OKGIIK_15200 -2.8 -21.8 Glutamate synthase subunit alpha compare
OKGIIK_04835 -2.8 -6.6 phosphoribosylanthranilate isomerase compare
OKGIIK_16835 aroQ -2.8 -7.1 type II 3-dehydroquinate dehydratase compare
OKGIIK_04975 hisF -2.8 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
OKGIIK_02315 purM -2.8 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_12290 pabA -2.8 -5.6 anthranilate/aminodeoxychorismate synthase component II compare
OKGIIK_05880 phaC -2.8 -12.9 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
OKGIIK_09440 argB -2.7 -10.9 acetylglutamate kinase compare
OKGIIK_05875 -2.7 -9.6 Poly(3-hydroxyalkanoate) polymerase subunit PhaE compare
OKGIIK_09430 argH -2.7 -6.9 argininosuccinate lyase compare
OKGIIK_10050 glcD -2.7 -14.4 FAD-binding oxidoreductase compare
OKGIIK_01255 fixB -2.7 -9.7 electron transfer flavoprotein subunit alpha compare
OKGIIK_11005 suhB -2.7 -3.6 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_12965 -2.7 -7.5 glutamate--cysteine ligase compare
OKGIIK_12280 trpC -2.7 -5.8 indole-3-glycerol phosphate synthase TrpC compare
OKGIIK_06870 hflD -2.7 -5.0 high frequency lysogenization protein HflD compare
OKGIIK_07900 rpoE -2.6 -8.7 RNA polymerase sigma factor RpoE compare
OKGIIK_15205 -2.6 -5.5 Glutamate synthase compare
OKGIIK_05570 purF -2.6 -6.5 amidophosphoribosyltransferase compare
OKGIIK_02120 lysA -2.6 -14.2 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
OKGIIK_10175 rseP -2.6 -1.8 RIP metalloprotease RseP compare
OKGIIK_13560 thrA -2.6 -6.8 homoserine dehydrogenase compare
OKGIIK_15735 23S_rrna -2.5 -1.7 23S ribosomal RNA compare
OKGIIK_13750 purD -2.5 -3.4 phosphoribosylamine--glycine ligase compare
OKGIIK_11180 -2.5 -7.8 Shikimate kinase compare
OKGIIK_09225 -2.5 -5.0 RecBCD enzyme subunit RecC compare
OKGIIK_11415 ldcA -2.5 -4.3 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_13195 -2.4 -11.9 Aminotransferase compare
OKGIIK_07250 lapB -2.4 -9.2 lipopolysaccharide assembly protein LapB compare
OKGIIK_05630 elaC -2.4 -5.5 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_05560 -2.4 -3.0 Sporulation protein compare
OKGIIK_16060 gpmA -2.4 -5.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_06595 kbl -2.3 -15.8 glycine C-acetyltransferase compare
OKGIIK_09995 yajC -2.3 -3.5 preprotein translocase subunit YajC compare
OKGIIK_09425 -2.3 -5.4 Cupin compare
OKGIIK_01165 rfbC -2.3 -5.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_11075 gshB -2.3 -6.2 glutathione synthase compare
OKGIIK_12110 -2.3 -14.1 ABC transporter compare
OKGIIK_09875 glpG -2.3 -13.2 DUF1751 domain-containing protein compare
OKGIIK_00745 aceF -2.3 -2.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_07300 -2.3 -3.8 carbamoyl phosphate synthase small subunit compare
OKGIIK_13020 secB -2.2 -3.0 protein-export chaperone SecB compare
OKGIIK_07255 -2.2 -4.3 LapA-dom domain-containing protein compare
OKGIIK_10055 serA -2.2 -5.8 phosphoglycerate dehydrogenase compare
OKGIIK_02250 rapZ -2.2 -10.0 RNase adapter RapZ compare
OKGIIK_07295 carB -2.2 -5.7 carbamoyl-phosphate synthase large subunit compare
OKGIIK_15610 -2.2 -7.6 EH domain-containing protein compare
OKGIIK_16330 folK -2.2 -3.4 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKGIIK_09420 proB -2.1 -6.1 glutamate 5-kinase compare
OKGIIK_09975 -2.1 -10.3 Aminoglycoside phosphotransferase compare
OKGIIK_12705 pta -2.1 -4.5 NADP-dependent malic enzyme compare
OKGIIK_00090 -2.1 -3.1 serine-type D-Ala-D-Ala carboxypeptidase compare
OKGIIK_06605 tdh -2.1 -15.5 L-threonine 3-dehydrogenase conserved
OKGIIK_09515 gph -2.1 -6.5 phosphoglycolate phosphatase compare
OKGIIK_07680 -2.1 -2.7 ATPase P compare
OKGIIK_02260 raiA -2.1 -11.8 ribosomal subunit interface protein compare
OKGIIK_00795 ycgM -2.1 -8.1 2-keto-4-pentenoate hydratase compare
OKGIIK_13570 thrC -2.1 -2.7 threonine synthase compare
OKGIIK_15065 phhA -2.0 -13.6 phenylalanine 4-monooxygenase compare
OKGIIK_04945 hisG -2.0 -2.3 ATP phosphoribosyltransferase compare
OKGIIK_07125 -2.0 -5.7 Ancillary SecYEG translocon subunit compare
OKGIIK_16625 -2.0 -11.6 Ferredoxin--NADP(+) reductase compare
OKGIIK_01285 fixX -2.0 -9.5 electron transfer flavoprotein-ubiquinone oxidoreductase compare
OKGIIK_07245 -2.0 -7.0 Glycosyl transferase family 4 compare
OKGIIK_11495 -1.9 -7.3 Glycosyl transferase family 2 compare
OKGIIK_15650 ftsN -1.9 -3.1 sporulation protein compare
OKGIIK_16340 -1.9 -8.1 pteridine reductase compare
OKGIIK_12135 mlaF -1.9 -7.7 ABC transporter ATP-binding protein compare
OKGIIK_01160 rfbD -1.9 -5.2 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_08010 -1.9 -9.7 Peptidylprolyl isomerase compare
OKGIIK_03635 fabG -1.9 -11.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
OKGIIK_12130 mlaE -1.8 -6.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_11435 nrdR -1.8 -5.3 transcriptional regulator NrdR compare
OKGIIK_01260 fixA -1.8 -0.8 EtfB protein compare
OKGIIK_16685 natB -1.8 -8.0 ABC transporter permease compare
OKGIIK_03305 minD -1.8 -1.9 septum site-determining protein MinD compare
OKGIIK_16745 pspE -1.7 -7.1 rhodanese-like domain-containing protein compare
OKGIIK_15705 -1.7 -6.5 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_02070 -1.7 -4.4 hypothetical protein compare
OKGIIK_12720 aspB -1.7 -10.7 aminotransferase compare
OKGIIK_01155 cpsB -1.7 -4.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_06755 rnr -1.7 -12.0 ribonuclease R compare
OKGIIK_03795 -1.7 -12.4 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_09230 -1.7 -2.7 RecBCD enzyme subunit RecB compare
OKGIIK_11115 fiu -1.7 -3.0 Outer membrane receptor for monomeric catechols compare
OKGIIK_12820 sYLF -1.7 -6.1 Las17-binding protein actin regulator compare
OKGIIK_06645 hflC -1.7 -7.5 protease modulator HflC compare
OKGIIK_11725 mraZ -1.6 -3.8 division/cell wall cluster transcriptional repressor MraZ compare
OKGIIK_08770 -1.6 -3.8 hypothetical protein compare
OKGIIK_06555 ahpC -1.6 -4.9 alkyl hydroperoxide reductase subunit C compare
OKGIIK_12700 aceE -1.6 -11.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_06920 aroA -1.6 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_13860 dtd -1.6 -5.8 D-aminoacyl-tRNA deacylase compare
OKGIIK_12120 -1.6 -8.8 Toluene tolerance protein compare
OKGIIK_01845 kup -1.5 -4.0 potassium uptake protein compare
OKGIIK_08100 -1.5 -6.9 Peptidase M23 compare
OKGIIK_01195 -1.5 -4.7 ABC transporter, ATP-binding protein compare
OKGIIK_07895 -1.5 -3.5 Anti-anti-sigma factor compare
OKGIIK_07040 smc -1.5 -2.9 chromosome segregation protein SMC compare
OKGIIK_15045 -1.5 -3.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_01080 fba1 -1.5 -9.5 fructose-bisphosphate aldolase class I compare
OKGIIK_16680 natA -1.5 -5.5 ABC transporter compare
OKGIIK_15695 -1.4 -6.3 MFS transporter compare
OKGIIK_16950 tolC -1.4 -10.3 Outer membrane protein TolC compare
OKGIIK_02255 hprK -1.4 -8.3 HPr(Ser) kinase/phosphatase compare
OKGIIK_11880 Gly_trna -1.4 -7.7 tRNA-Gly compare
OKGIIK_02245 manX -1.4 -8.0 PTS fructose IIA subunit family protein compare
OKGIIK_14345 nagA -1.4 -6.2 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_02265 -1.4 -7.5 RNA polymerase factor sigma-54 compare
OKGIIK_01170 rfbA -1.4 -7.6 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_07430 secG -1.4 -5.1 preprotein translocase subunit SecG compare
OKGIIK_00110 ctpA -1.4 -5.3 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_07240 flaA1 -1.4 -9.2 polysaccharide biosynthesis protein compare
OKGIIK_06640 hflK -1.4 -6.3 FtsH protease activity modulator HflK compare
OKGIIK_11390 pgpA -1.4 -3.9 Phosphatidylglycerophosphatase A compare
OKGIIK_10565 -1.3 -4.9 Ribosome-binding ATPase YchF compare
OKGIIK_12125 mlaD -1.3 -8.2 outer membrane lipid asymmetry maintenance protein MlaD compare
OKGIIK_11105 baeS -1.3 -3.5 sensor histidine kinase compare
OKGIIK_04915 -1.3 -3.6 Ferric uptake regulation protein compare
OKGIIK_01210 gmd -1.3 -8.7 GDP-mannose 4,6-dehydratase compare
OKGIIK_01240 -1.3 -4.2 EamA domain-containing protein compare
OKGIIK_15860 -1.3 -7.1 RNA pyrophosphohydrolase compare
OKGIIK_09925 nirD -1.3 -7.3 benzene 1,2-dioxygenase compare
OKGIIK_01175 rfbB -1.3 -7.7 dTDP-glucose 4,6-dehydratase compare
OKGIIK_11065 ompR -1.3 -2.5 two-component system response regulator compare
OKGIIK_06470 typA -1.3 -2.2 translational GTPase TypA compare
OKGIIK_05615 -1.2 -3.9 DUF6165 domain-containing protein compare
OKGIIK_13440 -1.2 -7.7 type I restriction-modification system subunit M compare
OKGIIK_12995 glk -1.2 -6.1 glucokinase compare
OKGIIK_14465 ntrC -1.2 -1.3 nitrogen regulation protein NR(I) compare
OKGIIK_09180 ubiE -1.2 -6.4 ArsR family transcriptional regulator compare
OKGIIK_11965 mscL -1.2 -0.8 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_01185 -1.2 -8.1 Glycosyl transferase compare
OKGIIK_11625 rsmA -1.2 -8.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
OKGIIK_01220 -1.2 -9.0 Phosphomannomutase compare
OKGIIK_03310 minC -1.2 -1.9 septum site-determining protein MinC compare
OKGIIK_12320 -1.2 -6.5 AbiEi-3-N domain-containing protein compare
OKGIIK_05840 rimP -1.2 -1.8 ribosome maturation protein RimP compare
OKGIIK_05210 -1.1 -2.2 HigA family addiction module antitoxin compare
OKGIIK_01180 metC -1.1 -7.4 cystathionine beta-lyase compare
OKGIIK_12595 aceF -1.1 -3.6 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_01800 clpB -1.1 -8.3 ATP-dependent chaperone ClpB compare
OKGIIK_09020 adhE -1.1 -3.5 aldehyde dehydrogenase family protein compare
OKGIIK_15330 -1.1 -3.5 DUF484 domain-containing protein compare
OKGIIK_00755 pdhA -1.1 -2.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_01270 -1.1 -3.3 Transcriptional regulator compare
OKGIIK_13855 -1.1 -1.7 Lipid A biosynthesis acyltransferase compare
OKGIIK_08045 tig -1.1 -3.9 trigger factor compare
OKGIIK_03380 -1.1 -2.8 Arc family DNA binding domain-containing protein compare
OKGIIK_11030 -1.1 -7.5 P63C domain-containing protein compare
OKGIIK_10885 dgkA -1.1 -3.6 diacylglycerol kinase compare
OKGIIK_06580 prpD -1.0 -4.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_08110 pcm -1.0 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
OKGIIK_15390 xth -1.0 -4.5 exodeoxyribonuclease III compare


Specific Phenotypes

For 7 genes in this experiment

For nutrient D-Glucose in Rhodanobacter sp. FW510-T8

For nutrient D-Glucose across organisms