Experiment set3S757 for Escherichia coli ECRC101

Compare to:

WM_Bas36

200 most important genes:

  gene name fitness t score description  
MCAODC_05400 pstB -5.4 -3.7 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_12295 guaA -4.9 -3.4 glutamine-hydrolyzing GMP synthase compare
MCAODC_12460 purC -4.8 -10.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_27055 purE -4.7 -5.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_12290 guaB -4.4 -6.7 IMP dehydrogenase compare
MCAODC_19060 kdgA -4.4 -2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
MCAODC_20475 perB -4.2 -4.9 GDP-perosamine N-acetyltransferase compare
MCAODC_05995 -4.1 -1.4 toxin compare
MCAODC_12720 ptsI -4.1 -2.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_03815 purD -3.9 -10.9 Phosphoribosylamine--glycine ligase compare
MCAODC_19155 nudB -3.8 -5.3 dihydroneopterin triphosphate diphosphatase compare
MCAODC_04330 pfkA -3.6 -3.5 6-phosphofructokinase compare
MCAODC_12340 purM -3.6 -7.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_24880 serC -3.5 -12.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_12000 purL -3.5 -18.1 phosphoribosylformylglycinamidine synthase compare
MCAODC_03810 purH -3.4 -12.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_05100 trxA -3.3 -4.0 thioredoxin TrxA compare
MCAODC_21670 galU -3.3 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_13755 purF -3.2 -10.3 amidophosphoribosyltransferase compare
MCAODC_01350 rsmA -3.1 -2.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
MCAODC_06185 rfaJ -3.1 -4.5 glucosyltransferase compare
MCAODC_16435 yncG -3.0 -2.4 Uncharacterized GST-like protein YncG compare
MCAODC_27385 ybaB -3.0 -2.0 YbaB/EbfC family nucleoid-associated protein compare
MCAODC_12335 purN -3.0 -10.7 phosphoribosylglycinamide formyltransferase compare
MCAODC_22960 yceD -2.9 -3.4 23S rRNA accumulation protein YceD compare
MCAODC_10075 sdhE -2.9 -1.9 FAD assembly factor SdhE compare
MCAODC_00860 dksA -2.7 -6.8 RNA polymerase-binding protein DksA compare
MCAODC_20530 wcaA -2.6 -2.5 glycosyl transferase compare
MCAODC_05950 escF -2.6 -1.8 type III secretion system LEE needle filament protein EscF compare
MCAODC_05365 -2.6 -1.3 fimbrial chaperone protein compare
MCAODC_01715 serB -2.5 -4.9 phosphoserine phosphatase compare
MCAODC_20480 cpsG -2.5 -2.5 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_10325 sctT -2.5 -1.9 type III secretion system export apparatus subunit SctT compare
MCAODC_05085 wecA -2.5 -12.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_09980 serA -2.4 -8.6 phosphoglycerate dehydrogenase compare
MCAODC_06165 rfaG -2.3 -5.7 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_20540 -2.3 -10.7 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
MCAODC_26025 tolB -2.3 -6.8 Tol-Pal system protein TolB compare
MCAODC_27060 purK -2.2 -6.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_19890 -2.2 -1.5 Phage-related protein, tail protein J compare
MCAODC_06195 rfaL -2.2 -4.8 O-antigen ligase RfaL compare
MCAODC_07005 hicB -2.2 -3.9 toxin-antitoxin system HicB family antitoxin compare
MCAODC_20220 Asn_trna -2.1 -1.3 tRNA-Asn(gtt) compare
MCAODC_10330 flhB -2.1 -1.7 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
MCAODC_06175 waaO -2.0 -5.0 lipopolysaccharide 3-alpha-galactosyltransferase compare
MCAODC_22925 fabF -2.0 -1.6 beta-ketoacyl-ACP synthase II compare
MCAODC_24965 lrp -2.0 -6.1 leucine-responsive transcriptional regulator Lrp compare
MCAODC_10975 cysC -2.0 -7.3 Adenylyl-sulfate kinase compare
MCAODC_20460 wzzB -2.0 -6.2 LPS O-antigen chain length determinant protein WzzB compare
MCAODC_08660 pnp -2.0 -5.5 polyribonucleotide nucleotidyltransferase compare
MCAODC_20525 wzy -2.0 -6.0 O157 family O-antigen polymerase compare
MCAODC_21850 ychF -1.9 -1.3 redox-regulated ATPase YchF compare
MCAODC_08595 secG -1.9 -1.2 preprotein translocase subunit SecG compare
MCAODC_21010 glpR -1.9 -1.3 transcriptional regulator compare
MCAODC_18965 rsmF -1.9 -1.9 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
MCAODC_13750 cvpA -1.9 -4.7 colicin V production protein compare
MCAODC_16135 hslJ -1.9 -2.1 heat shock protein HslJ compare
MCAODC_20085 -1.8 -1.4 hypothetical protein compare
MCAODC_24855 ihfB -1.8 -1.2 integration host factor subunit beta compare
MCAODC_23895 cadC1 -1.8 -1.7 transcriptional regulator compare
MCAODC_17830 add -1.8 -2.7 adenosine deaminase compare
MCAODC_09620 -1.8 -2.0 adherence protein compare
MCAODC_04235 hslV -1.8 -2.5 ATP-dependent protease subunit HslV compare
MCAODC_04590 typA -1.8 -8.7 ribosome-dependent GTPase TypA compare
MCAODC_24775 aspC -1.8 -2.0 aspartate transaminase compare
MCAODC_21590 yciI -1.8 -1.0 YciI family protein compare
MCAODC_02550 cysQ -1.8 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_24365 -1.8 -2.3 lysis protein compare
MCAODC_12540 eutS -1.7 -1.0 Bacterial microcompartment shell protein EutS compare
MCAODC_10905 cysH -1.7 -6.6 phosphoadenosine phosphosulfate reductase compare
MCAODC_21865 ldcA -1.7 -3.1 muramoyltetrapeptide carboxypeptidase compare
MCAODC_06170 rfaP -1.7 -3.0 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_26020 pal -1.7 -2.4 peptidoglycan-associated lipoprotein Pal compare
MCAODC_06190 rfaB -1.7 -3.4 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
MCAODC_08450 ptsN -1.6 -1.6 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_11930 lepA -1.6 -2.3 translation elongation factor 4 compare
MCAODC_09775 yggS -1.6 -5.8 pyridoxal phosphate homeostasis protein compare
MCAODC_23670 -1.6 -1.6 restriction endonuclease compare
MCAODC_00465 -1.6 -1.9 hypothetical protein compare
MCAODC_13145 -1.6 -3.1 Cell division protein ZapA compare
MCAODC_24420 ydiL -1.5 -1.9 CPBP family intramembrane metalloprotease compare
MCAODC_15150 repA2 -1.5 -6.2 Replication regulatory protein repA2 compare
MCAODC_23905 eAL -1.5 -1.8 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
MCAODC_00995 acnB -1.5 -1.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_15435 sopA -1.5 -1.5 plasmid-partitioning protein SopA compare
MCAODC_27555 clpX -1.5 -2.3 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_20490 wbdQ -1.5 -1.4 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
MCAODC_18270 ppsR -1.5 -2.0 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR compare
MCAODC_11535 -1.5 -2.3 protein NinG compare
MCAODC_12815 Ala_trna -1.5 -2.1 tRNA-Ala(ggc) compare
MCAODC_26040 tolQ -1.5 -1.3 Tol-Pal system protein TolQ compare
MCAODC_17760 fumC -1.5 -3.5 class II fumarate hydratase compare
MCAODC_19425 -1.5 -1.9 Phage protein compare
MCAODC_18440 chbA -1.5 -1.3 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
MCAODC_23785 lolD -1.4 -2.0 lipoprotein-releasing system ATP-binding protein LolD compare
MCAODC_06070 rpoZ -1.4 -1.9 DNA-directed RNA polymerase subunit omega compare
MCAODC_06525 yiaG -1.4 -1.7 HTH-type transcriptional regulator compare
MCAODC_26805 fepD -1.4 -3.7 ferrienterobactin ABC transporter permease compare
MCAODC_13265 -1.4 -3.7 hypothetical protein compare
MCAODC_16705 ydeR -1.4 -1.7 Uncharacterized fimbrial-like protein YdeR compare
MCAODC_26795 fepB -1.4 -6.6 ferrienterobactin ABC transporter periplasmic binding protein compare
MCAODC_08640 rbfA -1.4 -2.2 30S ribosome-binding factor RbfA compare
MCAODC_27545 -1.4 -4.4 Lon protease compare
MCAODC_26810 fepG -1.4 -3.7 iron-enterobactin ABC transporter permease compare
MCAODC_08475 lptC -1.4 -2.0 LPS export ABC transporter periplasmic protein LptC compare
MCAODC_22110 -1.3 -1.1 Tail tube terminator protein compare
MCAODC_19430 -1.3 -1.8 hypothetical protein compare
MCAODC_20200 rfaF -1.3 -3.3 Glycosyltransferase family 9 (heptosyltransferase) compare
MCAODC_15865 pspB -1.3 -1.2 envelope stress response membrane protein PspB compare
MCAODC_27560 clpP -1.3 -1.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
MCAODC_10895 cysJ -1.3 -8.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_17390 -1.3 -1.7 DUF3950 domain-containing protein compare
MCAODC_13255 -1.3 -2.2 hypothetical protein compare
MCAODC_01360 apaH -1.3 -1.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_15430 sopA -1.3 -2.5 plasmid-partitioning protein SopA compare
MCAODC_08130 Thr_trna -1.3 -0.9 tRNA-Thr(ggt) compare
MCAODC_26170 sdhC -1.2 -2.1 succinate dehydrogenase cytochrome b556 subunit compare
MCAODC_21585 tonB -1.2 -2.6 TonB system transport protein TonB compare
MCAODC_00145 -1.2 -3.8 Partial O replication protein for prophage CP-933H compare
MCAODC_07430 glgA -1.2 -7.9 glycogen synthase GlgA compare
MCAODC_10085 fldB -1.2 -2.3 flavodoxin FldB compare
MCAODC_26145 sucA -1.2 -1.7 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_01620 thrB -1.2 -5.5 homoserine kinase compare
MCAODC_06955 pitA -1.2 -1.2 inorganic phosphate transporter PitA compare
MCAODC_25280 -1.2 -3.4 addiction module toxin RelE compare
MCAODC_26030 tolA -1.2 -1.6 cell envelope integrity protein TolA compare
MCAODC_20445 hisA -1.2 -2.1 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
MCAODC_10900 cysI -1.2 -5.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_12270 bamB -1.2 -3.0 outer membrane protein assembly factor BamB compare
MCAODC_07640 aroK -1.2 -3.0 shikimate kinase AroK compare
MCAODC_21140 fimA -1.2 -1.3 Uncharacterized fimbrial-like protein YehD compare
MCAODC_06065 spoT -1.1 -2.0 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
MCAODC_24430 -1.1 -1.4 Endodeoxyribonuclease RusA compare
MCAODC_01530 fimD -1.1 -2.0 fimbrial assembly protein compare
MCAODC_02465 -1.1 -1.4 Ribose import ATP-binding protein RbsA compare
MCAODC_20605 wcaE -1.1 -1.8 colanic acid biosynthesis glycosyltransferase WcaE compare
MCAODC_13080 -1.1 -3.2 adenine methylase compare
MCAODC_27710 parD -1.1 -1.4 Antitoxin ParD compare
MCAODC_09635 nleE -1.1 -2.1 type III secretion system effector cysteine methyltransferase NleE compare
MCAODC_22465 potB -1.1 -3.1 spermidine/putrescine ABC transporter permease PotB compare
MCAODC_13545 -1.1 -1.3 bacteriocin compare
MCAODC_26065 cydA -1.1 -1.0 cytochrome ubiquinol oxidase subunit I compare
MCAODC_09160 Ile2_trna -1.1 -2.0 tRNA-Ile2(cat) compare
MCAODC_21675 rssB -1.1 -2.0 two-component system response regulator RssB compare
MCAODC_13920 nuoJ -1.1 -2.2 NADH-quinone oxidoreductase subunit J compare
MCAODC_07645 aroB -1.1 -4.0 3-dehydroquinate synthase compare
MCAODC_16950 nleG2-3 -1.1 -1.4 DUF1076 domain-containing protein compare
MCAODC_19630 fliT -1.1 -3.2 flagella biosynthesis regulatory protein FliT compare
MCAODC_19045 yebF -1.0 -1.4 Protein YebF compare
MCAODC_10315 -1.0 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
MCAODC_18940 prc -1.0 -5.3 carboxy terminal-processing peptidase compare
MCAODC_21515 -1.0 -0.8 transcriptional regulator compare
MCAODC_08085 aroE -1.0 -4.5 shikimate dehydrogenase compare
MCAODC_18000 mepH -1.0 -3.1 peptidoglycan DD-endopeptidase MepH compare
MCAODC_21925 ycgN -1.0 -3.1 YcgN family cysteine cluster protein compare
MCAODC_25650 nleB2 -1.0 -1.8 type III secretion system effector arginine glycosyltransferase NleB2 compare
MCAODC_15635 rluB -1.0 -1.9 23S rRNA pseudouridine(2605) synthase RluB compare
MCAODC_11460 Ile2_trna -1.0 -1.3 tRNA-Ile2(cat) compare
MCAODC_18220 ydiF -1.0 -1.5 Acetate CoA-transferase YdiF compare
MCAODC_24875 aroA -1.0 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
MCAODC_11890 srmB -1.0 -3.3 ATP-dependent RNA helicase SrmB compare
MCAODC_19865 -1.0 -1.0 hypothetical protein compare
MCAODC_16265 -1.0 -1.8 Regulatory protein mokB compare
MCAODC_26380 nagA -1.0 -3.8 N-acetylglucosamine-6-phosphate deacetylase compare
MCAODC_16200 azoR -1.0 -2.5 FMN-dependent NADH-azoreductase compare
MCAODC_01615 thrC -1.0 -2.8 threonine synthase compare
MCAODC_06180 rfaY -1.0 -1.4 lipopolysaccharide core heptose(II) kinase RfaY compare
MCAODC_17600 -1.0 -1.1 Integrase, cryptic prophage CP-933P compare
MCAODC_18295 nlpC -1.0 -1.6 putative endopeptidase NlpC compare
MCAODC_05955 escG -1.0 -0.9 type III secretion system LEE needle protein cochaperone EscG compare
MCAODC_21030 gatA -1.0 -1.0 PTS galactitol transporter subunit IIA compare
MCAODC_10370 ygeN -1.0 -1.6 Putative uncharacterized protein YgeN compare
MCAODC_13485 -1.0 -4.5 phage tail protein compare
MCAODC_01625 thrA -1.0 -7.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
MCAODC_24120 -1.0 -1.4 Threonine-rich inner membrane protein GfcA compare
MCAODC_04075 argH -1.0 -5.3 argininosuccinate lyase compare
MCAODC_15170 putA1 -0.9 -1.7 CopG family transcriptional regulator compare
MCAODC_26375 nagB -0.9 -4.6 glucosamine-6-phosphate deaminase compare
MCAODC_01195 mraZ -0.9 -2.3 division/cell wall cluster transcriptional repressor MraZ compare
MCAODC_23300 -0.9 -0.5 chemotaxis protein compare
MCAODC_25120 -0.9 -1.0 hypothetical protein compare
MCAODC_07335 -0.9 -2.1 hypothetical protein compare
MCAODC_00870 pcnB -0.9 -3.8 polynucleotide adenylyltransferase PcnB compare
MCAODC_00280 dinJ -0.9 -2.3 type II toxin-antitoxin system antitoxin DinJ compare
MCAODC_09835 speB -0.9 -3.5 agmatinase compare
MCAODC_18090 ydhU -0.9 -2.1 Putative cytochrome YdhU compare
MCAODC_21335 -0.9 -0.9 phage tail protein compare
MCAODC_20485 manC2 -0.9 -1.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
MCAODC_18215 aroD -0.9 -2.3 3-dehydroquinate dehydratase compare
MCAODC_07415 glgB -0.9 -7.2 1,4-alpha-glucan branching enzyme compare
MCAODC_22790 potC -0.9 -1.4 spermidine/putrescine ABC transporter permease PotC compare
MCAODC_05390 pstC -0.9 -3.1 phosphate ABC transporter permease PstC compare
MCAODC_13525 -0.9 -2.4 hok/gef family protein compare
MCAODC_07520 -0.9 -2.3 NfuA family Fe-S biogenesis protein compare
MCAODC_20785 ogrK -0.9 -2.5 prophage transcriptional regulator OgrK compare
MCAODC_22160 -0.9 -1.7 DNA-packaging protein compare
MCAODC_23740 -0.9 -2.8 DUF3987 domain-containing protein compare
MCAODC_09485 exbD -0.9 -1.9 TonB system transport protein ExbD compare
MCAODC_28035 lacI -0.9 -2.6 DNA-binding transcriptional repressor LacI compare
MCAODC_04915 uvrD -0.9 -4.0 DNA helicase II compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage Phage across organisms