Experiment set3S747 for Escherichia coli ECRC101

Compare to:

WM_TP6

200 most important genes:

  gene name fitness t score description  
MCAODC_06190 rfaB -7.0 -4.9 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
MCAODC_06185 rfaJ -7.0 -6.8 glucosyltransferase compare
MCAODC_20540 -6.8 -12.3 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
MCAODC_06175 waaO -6.7 -4.6 lipopolysaccharide 3-alpha-galactosyltransferase compare
MCAODC_20485 manC2 -6.7 -4.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
MCAODC_20530 wcaA -6.6 -4.1 glycosyl transferase compare
MCAODC_27055 purE -6.5 -4.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_20525 wzy -6.4 -4.4 O157 family O-antigen polymerase compare
MCAODC_12340 purM -6.2 -6.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_20475 perB -6.1 -4.2 GDP-perosamine N-acetyltransferase compare
MCAODC_20460 wzzB -6.0 -10.0 LPS O-antigen chain length determinant protein WzzB compare
MCAODC_05085 wecA -5.8 -18.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_24775 aspC -5.7 -4.0 aspartate transaminase compare
MCAODC_06195 rfaL -5.5 -6.4 O-antigen ligase RfaL compare
MCAODC_19890 -5.3 -1.9 Phage-related protein, tail protein J compare
MCAODC_12290 guaB -5.2 -3.6 IMP dehydrogenase compare
MCAODC_17770 manA -5.2 -2.5 mannose-6-phosphate isomerase compare
MCAODC_12460 purC -5.1 -10.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_16435 yncG -5.0 -3.1 Uncharacterized GST-like protein YncG compare
MCAODC_09775 yggS -4.7 -8.5 pyridoxal phosphate homeostasis protein compare
MCAODC_03815 purD -4.6 -12.1 Phosphoribosylamine--glycine ligase compare
MCAODC_12000 purL -4.6 -19.3 phosphoribosylformylglycinamidine synthase compare
MCAODC_03810 purH -4.5 -15.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_01360 apaH -4.5 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_20480 cpsG -4.5 -3.1 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_13755 purF -4.4 -15.9 amidophosphoribosyltransferase compare
MCAODC_27060 purK -4.4 -9.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_18565 ynjH -4.3 -2.7 Uncharacterized protein YnjH compare
MCAODC_01715 serB -4.2 -8.2 phosphoserine phosphatase compare
MCAODC_15400 ccdB -4.2 -1.5 type II toxin-antitoxin system toxin CcdB compare
MCAODC_24855 ihfB -4.1 -2.6 integration host factor subunit beta compare
MCAODC_13950 elaD -3.9 -2.0 ElaD/SseL family deubiquitinase compare
MCAODC_23905 eAL -3.9 -2.6 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
MCAODC_19155 nudB -3.9 -4.5 dihydroneopterin triphosphate diphosphatase compare
MCAODC_27385 ybaB -3.9 -2.0 YbaB/EbfC family nucleoid-associated protein compare
MCAODC_08710 yhbQ -3.9 -2.4 DNA damage response exodeoxyribonuclease YhbQ compare
MCAODC_22980 rne -3.5 -3.6 ribonuclease E compare
MCAODC_00860 dksA -3.5 -7.1 RNA polymerase-binding protein DksA compare
MCAODC_06205 rfaF -3.5 -2.4 ADP-heptose--LPS heptosyltransferase RfaF compare
MCAODC_06165 rfaG -3.5 -5.8 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_14780 -3.4 -2.0 conjugal transfer protein TraR compare
MCAODC_04650 polA -3.4 -2.3 DNA polymerase I compare
MCAODC_20490 wbdQ -3.2 -1.5 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
MCAODC_26040 tolQ -3.2 -3.1 Tol-Pal system protein TolQ compare
MCAODC_12295 guaA -3.1 -3.4 glutamine-hydrolyzing GMP synthase compare
MCAODC_24965 lrp -3.1 -5.8 leucine-responsive transcriptional regulator Lrp compare
MCAODC_26380 nagA -3.1 -7.8 N-acetylglucosamine-6-phosphate deacetylase compare
MCAODC_21675 rssB -3.1 -4.7 two-component system response regulator RssB compare
MCAODC_18270 ppsR -3.1 -2.9 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR compare
MCAODC_17955 sodC -3.1 -2.1 superoxide dismutase [Cu-Zn] SodC compare
MCAODC_10975 cysC -3.0 -9.4 Adenylyl-sulfate kinase compare
MCAODC_02550 cysQ -3.0 -7.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_22435 -2.9 -2.9 hypothetical protein compare
MCAODC_08200 fis -2.9 -2.1 DNA-binding transcriptional regulator Fis compare
MCAODC_09980 serA -2.9 -8.5 phosphoglycerate dehydrogenase compare
MCAODC_19430 -2.8 -3.5 hypothetical protein compare
MCAODC_21305 -2.8 -1.4 phage tail tape measure protein compare
MCAODC_10905 cysH -2.8 -6.1 phosphoadenosine phosphosulfate reductase compare
MCAODC_04590 typA -2.8 -8.4 ribosome-dependent GTPase TypA compare
MCAODC_05065 rffG -2.8 -10.7 dTDP-glucose 4,6-dehydratase compare
MCAODC_05400 pstB -2.7 -1.9 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_04600 glnA -2.7 -4.3 glutamate--ammonia ligase compare
MCAODC_09425 ftsP -2.5 -2.4 cell division protein FtsP compare
MCAODC_13750 cvpA -2.5 -3.5 colicin V production protein compare
MCAODC_24880 serC -2.5 -6.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_04330 pfkA -2.5 -3.0 6-phosphofructokinase compare
MCAODC_18670 yeaC -2.5 -1.7 Uncharacterized protein YeaC compare
MCAODC_20535 galF -2.5 -3.1 UTP--glucose-1-phosphate uridylyltransferase GalF compare
MCAODC_00995 acnB -2.4 -1.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_15510 yubL -2.4 -0.8 UPF0401 protein YubL compare
MCAODC_21670 galU -2.4 -2.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_12335 purN -2.3 -7.9 phosphoribosylglycinamide formyltransferase compare
MCAODC_01260 -2.3 -1.8 hypothetical protein compare
MCAODC_12270 bamB -2.3 -6.8 outer membrane protein assembly factor BamB compare
MCAODC_27710 parD -2.2 -2.3 Antitoxin ParD compare
MCAODC_06170 rfaP -2.2 -3.2 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_15840 puuC -2.2 -2.8 aldehyde dehydrogenase PuuC compare
MCAODC_11930 lepA -2.2 -2.7 translation elongation factor 4 compare
MCAODC_13655 aroC -2.2 -3.6 chorismate synthase compare
MCAODC_08450 ptsN -2.2 -2.0 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_20445 hisA -2.1 -3.4 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
MCAODC_24120 -2.1 -1.8 Threonine-rich inner membrane protein GfcA compare
MCAODC_13350 Arg_trna -2.1 -1.8 tRNA-Arg(tct) compare
MCAODC_20865 -2.1 -1.7 phage virion morphogenesis protein compare
MCAODC_11890 srmB -2.0 -5.1 ATP-dependent RNA helicase SrmB compare
MCAODC_05365 -2.0 -1.0 fimbrial chaperone protein compare
MCAODC_15430 sopA -2.0 -2.4 plasmid-partitioning protein SopA compare
MCAODC_17810 hdhA -2.0 -2.7 7-alpha-hydroxysteroid dehydrogenase compare
MCAODC_18135 sufE -2.0 -1.0 cysteine desulfuration protein SufE compare
MCAODC_08130 Thr_trna -2.0 -1.0 tRNA-Thr(ggt) compare
MCAODC_27545 -2.0 -4.9 Lon protease compare
MCAODC_14900 ybcN -2.0 -3.2 DNA base-flipping protein YbcN compare
MCAODC_25785 -1.9 -1.2 DUF3927 domain-containing protein compare
MCAODC_17830 add -1.9 -2.7 adenosine deaminase compare
MCAODC_10895 cysJ -1.9 -8.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_05100 trxA -1.9 -2.1 thioredoxin TrxA compare
MCAODC_27135 hyi -1.9 -2.2 hydroxypyruvate isomerase compare
MCAODC_05955 escG -1.8 -1.2 type III secretion system LEE needle protein cochaperone EscG compare
MCAODC_19355 yecR -1.8 -2.3 Uncharacterized protein YecR compare
MCAODC_17105 -1.8 -1.5 TrmB family transcriptional regulator compare
MCAODC_19980 -1.8 -1.1 PerC family transcriptional regulator compare
MCAODC_02110 fimC -1.8 -3.6 type 1 fimbria chaperone FimC compare
MCAODC_23535 terW -1.8 -1.3 tellurium resistance protein TerW compare
MCAODC_10085 fldB -1.8 -2.3 flavodoxin FldB compare
MCAODC_20635 wzb -1.7 -2.5 low molecular weight protein-tyrosine-phosphatase Wzb compare
MCAODC_04185 metJ -1.7 -1.7 met regulon transcriptional regulator MetJ compare
MCAODC_26030 tolA -1.7 -2.2 cell envelope integrity protein TolA compare
MCAODC_21600 clsA -1.7 -2.3 cardiolipin synthase ClsA compare
MCAODC_10900 cysI -1.7 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_16570 yddM -1.7 -1.8 HigA family addiction module antitoxin compare
MCAODC_08625 nusA -1.7 -1.1 Transcription termination/antitermination protein NusA compare
MCAODC_15025 -1.7 -1.6 recombinase RecA compare
MCAODC_18205 uhpC -1.7 -2.3 MFS transporter compare
MCAODC_16135 hslJ -1.6 -1.9 heat shock protein HslJ compare
MCAODC_21590 yciI -1.6 -1.4 YciI family protein compare
MCAODC_04890 -1.6 -3.4 DUF3289 domain-containing protein compare
MCAODC_21455 rusA -1.6 -1.5 Endodeoxyribonuclease RusA compare
MCAODC_04235 hslV -1.6 -2.1 ATP-dependent protease subunit HslV compare
MCAODC_15150 repA2 -1.6 -5.8 Replication regulatory protein repA2 compare
MCAODC_18220 ydiF -1.6 -1.6 Acetate CoA-transferase YdiF compare
MCAODC_13455 -1.6 -1.9 hypothetical protein compare
MCAODC_22960 yceD -1.6 -2.3 23S rRNA accumulation protein YceD compare
MCAODC_14895 ybcM -1.6 -0.9 Uncharacterized HTH-type transcriptional regulator YbcM compare
MCAODC_06520 cspA -1.6 -1.9 Major cold shock protein compare
MCAODC_11910 rseA -1.6 -2.9 anti-sigma-E factor RseA compare
MCAODC_05985 -1.6 -1.0 Aec79 compare
MCAODC_10265 araC -1.5 -2.5 AraC family transcriptional regulator compare
MCAODC_26020 pal -1.5 -2.4 peptidoglycan-associated lipoprotein Pal compare
MCAODC_25565 moaE -1.5 -1.1 molybdopterin synthase catalytic subunit MoaE compare
MCAODC_06070 rpoZ -1.5 -1.7 DNA-directed RNA polymerase subunit omega compare
MCAODC_26830 ybdZ -1.5 -0.9 Enterobactin biosynthesis protein YbdZ compare
MCAODC_24875 aroA -1.5 -6.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
MCAODC_25835 -1.5 -1.6 DUF1382 domain-containing protein compare
MCAODC_26025 tolB -1.5 -3.2 Tol-Pal system protein TolB compare
MCAODC_22925 fabF -1.4 -1.1 beta-ketoacyl-ACP synthase II compare
MCAODC_02745 purA -1.4 -1.3 adenylosuccinate synthase compare
MCAODC_20440 hisH -1.4 -2.2 imidazole glycerol phosphate synthase subunit HisH compare
MCAODC_24515 -1.4 -1.2 hypothetical protein compare
MCAODC_26065 cydA -1.3 -1.0 cytochrome ubiquinol oxidase subunit I compare
MCAODC_14730 yohO -1.3 -1.2 protein YohO compare
MCAODC_08085 aroE -1.3 -4.9 shikimate dehydrogenase compare
MCAODC_13410 -1.3 -4.1 lysis protein compare
MCAODC_09970 argP -1.3 -3.0 DNA-binding transcriptional regulator ArgP compare
MCAODC_08595 secG -1.3 -0.8 preprotein translocase subunit SecG compare
MCAODC_00015 bor -1.3 -0.9 serum resistance lipoprotein Bor compare
MCAODC_24140 gfcE -1.3 -4.5 Putative polysaccharide export protein GfcE compare
MCAODC_23670 -1.3 -0.8 restriction endonuclease compare
MCAODC_19045 yebF -1.3 -1.4 Protein YebF compare
MCAODC_13625 -1.3 -1.0 Minor fimbrial subunit compare
MCAODC_09835 speB -1.3 -3.9 agmatinase compare
MCAODC_18215 aroD -1.2 -1.5 3-dehydroquinate dehydratase compare
MCAODC_23300 -1.2 -1.2 chemotaxis protein compare
MCAODC_20450 hisF -1.2 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
MCAODC_18560 nudG -1.2 -1.4 CTP pyrophosphohydrolase compare
MCAODC_10315 -1.2 -1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
MCAODC_14045 nudI -1.2 -3.5 nucleoside triphosphatase NudI compare
MCAODC_14880 emrE -1.2 -1.2 multidrug efflux SMR transporter EmrE compare
MCAODC_18485 astE -1.2 -2.9 succinylglutamate desuccinylase compare
MCAODC_05280 asnC -1.2 -5.9 transcriptional regulator AsnC compare
MCAODC_15895 ycjN -1.2 -1.2 Putative ABC transporter periplasmic-binding protein YcjN compare
MCAODC_18600 sIMPL -1.2 -2.1 SIMPL domain-containing protein compare
MCAODC_16225 -1.2 -2.4 hypothetical protein compare
MCAODC_10325 sctT -1.2 -1.2 type III secretion system export apparatus subunit SctT compare
MCAODC_08350 sspA -1.2 -2.7 stringent starvation protein A compare
MCAODC_05785 cesAB -1.2 -1.4 chaperone for EspA and EspB compare
MCAODC_01350 rsmA -1.2 -1.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
MCAODC_15070 -1.2 -1.0 phage minor tail protein L compare
MCAODC_17235 -1.2 -1.7 site-specific integrase compare
MCAODC_10280 escV -1.2 -2.8 EscV/YscV/HrcV family type III secretion system export apparatus protein compare
MCAODC_19460 -1.2 -1.8 Phage protein compare
MCAODC_01485 fkpB -1.2 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
MCAODC_26105 -1.2 -0.9 DUF4387 domain-containing protein compare
MCAODC_18770 yeaR -1.1 -2.9 Uncharacterized protein YeaR compare
MCAODC_05055 rffC -1.1 -3.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
MCAODC_19795 dcm -1.1 -1.8 DNA-cytosine methyltransferase compare
MCAODC_06955 pitA -1.1 -1.5 inorganic phosphate transporter PitA compare
MCAODC_16625 ddpX -1.1 -2.1 D-alanyl-D-alanine dipeptidase compare
MCAODC_00185 Thr_trna -1.1 -0.7 tRNA-Thr(cgt) compare
MCAODC_13405 -1.1 -1.0 hypothetical protein compare
MCAODC_11750 tyrA -1.1 -5.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
MCAODC_28150 yahL -1.1 -1.3 Uncharacterized protein YahL compare
MCAODC_19540 insI1 -1.1 -1.7 IS30 family transposase compare
MCAODC_05060 rfbA -1.1 -3.4 glucose-1-phosphate thymidylyltransferase RfbA compare
MCAODC_08475 lptC -1.1 -1.9 LPS export ABC transporter periplasmic protein LptC compare
MCAODC_23440 -1.1 -0.9 hypothetical protein compare
MCAODC_16950 nleG2-3 -1.1 -1.7 DUF1076 domain-containing protein compare
MCAODC_11310 emrR -1.1 -1.9 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
MCAODC_03705 manX -1.1 -2.7 PTS sorbose transporter subunit IIA compare
MCAODC_04915 uvrD -1.1 -3.6 DNA helicase II compare
MCAODC_15705 lapA -1.1 -1.9 lipopolysaccharide assembly protein LapA compare
MCAODC_22415 -1.1 -2.6 DNA primase compare
MCAODC_09315 ygiB -1.1 -3.3 DUF1190 domain-containing protein compare
MCAODC_07520 -1.1 -2.3 NfuA family Fe-S biogenesis protein compare
MCAODC_15450 -1.1 -0.9 hypothetical protein compare
MCAODC_04770 rfaH -1.1 -1.2 transcription/translation regulatory transformer protein RfaH compare
MCAODC_02340 argF -1.1 -5.7 ornithine carbamoyltransferase compare
MCAODC_25690 -1.1 -1.7 phage tail protein compare
MCAODC_20725 -1.0 -2.8 Type I toxin-antitoxin system Ibs family toxin compare
MCAODC_08640 rbfA -1.0 -1.2 30S ribosome-binding factor RbfA compare
MCAODC_04950 cyaA -1.0 -2.3 class I adenylate cyclase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage Phage across organisms