Experiment set3S738 for Escherichia coli ECRC101

Compare to:

Control_ECRC101_WM

200 most important genes:

  gene name fitness t score description  
MCAODC_27055 purE -6.7 -4.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_00860 dksA -6.0 -11.5 RNA polymerase-binding protein DksA compare
MCAODC_07645 aroB -4.8 -10.8 3-dehydroquinate synthase compare
MCAODC_09475 metC -4.8 -13.4 cystathionine beta-lyase compare
MCAODC_03775 metA -4.7 -13.3 homoserine O-succinyltransferase compare
MCAODC_03815 purD -4.7 -10.4 Phosphoribosylamine--glycine ligase compare
MCAODC_20475 perB -4.6 -5.2 GDP-perosamine N-acetyltransferase compare
MCAODC_24880 serC -4.6 -11.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_20480 cpsG -4.6 -3.1 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_12295 guaA -4.6 -3.1 glutamine-hydrolyzing GMP synthase compare
MCAODC_09085 higA -4.5 -2.1 type II toxin-antitoxin system antitoxin HigA compare
MCAODC_16170 pdxI -4.5 -3.8 pyridoxine 4-dehydrogenase compare
MCAODC_04165 metF -4.4 -12.3 methylenetetrahydrofolate reductase compare
MCAODC_12000 purL -4.2 -18.4 phosphoribosylformylglycinamidine synthase compare
MCAODC_26040 tolQ -4.1 -2.8 Tol-Pal system protein TolQ compare
MCAODC_08450 ptsN -4.1 -2.8 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_04175 metB -4.1 -12.9 cystathionine gamma-synthase compare
MCAODC_24875 aroA -4.0 -14.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
MCAODC_03810 purH -3.9 -12.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_13655 aroC -3.9 -6.2 chorismate synthase compare
MCAODC_24775 aspC -3.8 -2.8 aspartate transaminase compare
MCAODC_05150 ilvE -3.8 -12.5 branched-chain-amino-acid transaminase compare
MCAODC_01620 thrB -3.8 -8.2 homoserine kinase compare
MCAODC_13755 purF -3.8 -11.2 amidophosphoribosyltransferase compare
MCAODC_10975 cysC -3.8 -10.2 Adenylyl-sulfate kinase compare
MCAODC_17105 -3.7 -1.7 TrmB family transcriptional regulator compare
MCAODC_12540 eutS -3.7 -1.7 Bacterial microcompartment shell protein EutS compare
MCAODC_02550 cysQ -3.7 -9.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_01235 leuB -3.7 -11.3 3-isopropylmalate dehydrogenase compare
MCAODC_06205 rfaF -3.7 -2.5 ADP-heptose--LPS heptosyltransferase RfaF compare
MCAODC_05400 pstB -3.6 -2.9 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_01240 leuC1 -3.6 -9.7 3-isopropylmalate dehydratase large subunit 1 compare
MCAODC_27060 purK -3.6 -6.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_11755 pheA -3.5 -10.3 bifunctional chorismate mutase/prephenate dehydratase compare
MCAODC_07455 glpD -3.4 -7.0 glycerol-3-phosphate dehydrogenase compare
MCAODC_01245 leuD -3.4 -6.7 3-isopropylmalate dehydratase small subunit compare
MCAODC_12460 purC -3.4 -6.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_20490 wbdQ -3.3 -1.4 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
MCAODC_01110 secM -3.3 -2.5 secA translation cis-regulator SecM compare
MCAODC_08085 aroE -3.3 -9.0 shikimate dehydrogenase compare
MCAODC_20440 hisH -3.3 -3.1 imidazole glycerol phosphate synthase subunit HisH compare
MCAODC_12340 purM -3.2 -6.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_16435 yncG -3.2 -2.1 Uncharacterized GST-like protein YncG compare
MCAODC_01360 apaH -3.2 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_26145 sucA -3.1 -3.7 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_26140 odhB -3.0 -2.9 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
MCAODC_01625 thrA -3.0 -14.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
MCAODC_10900 cysI -3.0 -8.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_15610 trpE -3.0 -8.9 anthranilate synthase component I compare
MCAODC_05100 trxA -3.0 -2.8 thioredoxin TrxA compare
MCAODC_09980 serA -3.0 -9.2 phosphoglycerate dehydrogenase compare
MCAODC_16675 ydeM -2.9 -1.2 anaerobic sulfatase maturase compare
MCAODC_24475 -2.9 -2.5 hypothetical protein compare
MCAODC_25195 -2.9 -1.4 DUF1418 domain-containing protein compare
MCAODC_15360 -2.8 -1.5 hypothetical protein compare
MCAODC_24120 -2.8 -1.8 Threonine-rich inner membrane protein GfcA compare
MCAODC_13750 cvpA -2.8 -4.1 colicin V production protein compare
MCAODC_05145 ilvD -2.8 -12.0 dihydroxy-acid dehydratase compare
MCAODC_27545 -2.8 -6.7 Lon protease compare
MCAODC_28545 alpA -2.8 -1.7 AlpA family transcriptional regulator compare
MCAODC_24855 ihfB -2.8 -1.9 integration host factor subunit beta compare
MCAODC_05130 ilvC -2.7 -11.4 ketol-acid reductoisomerase compare
MCAODC_01715 serB -2.6 -6.1 phosphoserine phosphatase compare
MCAODC_19800 yedJ -2.6 -2.3 phosphohydrolase compare
MCAODC_06515 hokA -2.6 -1.6 type I toxin-antitoxin system toxin HokA compare
MCAODC_24965 lrp -2.5 -6.4 leucine-responsive transcriptional regulator Lrp compare
MCAODC_04610 glnG -2.5 -8.3 nitrogen regulation protein NR(I) compare
MCAODC_15590 trpA -2.5 -3.7 tryptophan synthase subunit alpha compare
MCAODC_12290 guaB -2.5 -4.1 IMP dehydrogenase compare
MCAODC_13950 elaD -2.5 -1.4 ElaD/SseL family deubiquitinase compare
MCAODC_24125 gfcB -2.5 -3.2 Uncharacterized lipoprotein GfcB compare
MCAODC_01230 -2.5 -11.0 2-isopropylmalate synthase compare
MCAODC_06165 rfaG -2.4 -6.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_21675 rssB -2.4 -4.2 two-component system response regulator RssB compare
MCAODC_10895 cysJ -2.4 -9.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_08595 secG -2.4 -1.1 preprotein translocase subunit SecG compare
MCAODC_18215 aroD -2.3 -2.6 3-dehydroquinate dehydratase compare
MCAODC_20485 manC2 -2.3 -2.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
MCAODC_15450 -2.3 -3.0 hypothetical protein compare
MCAODC_22790 potC -2.3 -2.7 spermidine/putrescine ABC transporter permease PotC compare
MCAODC_04085 argC -2.3 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
MCAODC_18125 lpp -2.3 -1.1 murein lipoprotein Lpp compare
MCAODC_24585 yccU -2.3 -2.4 Uncharacterized protein YccU compare
MCAODC_19155 nudB -2.2 -4.1 dihydroneopterin triphosphate diphosphatase compare
MCAODC_09290 ubiK -2.2 -1.2 ubiquinone biosynthesis accessory factor UbiK compare
MCAODC_06955 pitA -2.2 -3.3 inorganic phosphate transporter PitA compare
MCAODC_08625 nusA -2.2 -1.5 Transcription termination/antitermination protein NusA compare
MCAODC_12335 purN -2.1 -6.4 phosphoribosylglycinamide formyltransferase compare
MCAODC_06175 waaO -2.1 -4.4 lipopolysaccharide 3-alpha-galactosyltransferase compare
MCAODC_01615 thrC -2.1 -4.1 threonine synthase compare
MCAODC_19135 -2.1 -1.9 Protein compare
MCAODC_16570 yddM -2.1 -1.9 HigA family addiction module antitoxin compare
MCAODC_23670 -2.0 -1.3 restriction endonuclease compare
MCAODC_21525 -2.0 -1.2 hypothetical protein compare
MCAODC_27555 clpX -2.0 -2.7 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_10330 flhB -2.0 -1.3 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
MCAODC_05140 ilvA -1.9 -7.6 threonine ammonia-lyase, biosynthetic compare
MCAODC_15600 trpCF -1.9 -6.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
MCAODC_07710 cysG -1.9 -7.2 siroheme synthase CysG compare
MCAODC_19720 fliN -1.9 -2.6 flagellar motor switch protein FliN compare
MCAODC_08530 sfsB -1.9 -1.4 DNA-binding transcriptional regulator SfsB compare
MCAODC_16130 ydbJ -1.9 -1.6 Uncharacterized protein YdbJ compare
MCAODC_04655 -1.8 -0.9 hypothetical protein compare
MCAODC_08220 yhdT -1.8 -1.5 Uncharacterized membrane protein YhdT compare
MCAODC_26025 tolB -1.8 -4.5 Tol-Pal system protein TolB compare
MCAODC_21670 galU -1.8 -2.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_15605 trpD -1.8 -5.2 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
MCAODC_10905 cysH -1.8 -3.1 phosphoadenosine phosphosulfate reductase compare
MCAODC_26375 nagB -1.8 -5.4 glucosamine-6-phosphate deaminase compare
MCAODC_15435 sopA -1.8 -1.2 plasmid-partitioning protein SopA compare
MCAODC_05855 escI -1.8 -1.8 Type III secretion system inner rod component EscI compare
MCAODC_15505 ssb -1.7 -3.2 single-stranded DNA-binding protein compare
MCAODC_23610 -1.7 -1.4 Transposase compare
MCAODC_06195 rfaL -1.7 -5.5 O-antigen ligase RfaL compare
MCAODC_11750 tyrA -1.7 -8.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
MCAODC_01225 leuL -1.7 -2.3 leu operon leader peptide compare
MCAODC_18475 ves -1.7 -2.0 environmental stress-induced protein Ves compare
MCAODC_15150 repA2 -1.7 -6.7 Replication regulatory protein repA2 compare
MCAODC_20455 hisIE -1.7 -2.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
MCAODC_22415 -1.7 -3.6 DNA primase compare
MCAODC_12315 -1.7 -1.7 hypothetical protein compare
MCAODC_04940 yifL -1.7 -3.3 Uncharacterized lipoprotein YifL compare
MCAODC_11970 shoB -1.7 -1.1 Small toxic protein ShoB compare
MCAODC_24150 etk -1.6 -5.0 tyrosine-protein kinase compare
MCAODC_04590 typA -1.6 -7.1 ribosome-dependent GTPase TypA compare
MCAODC_20655 -1.6 -3.5 transcriptional regulator compare
MCAODC_05085 wecA -1.6 -8.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_16705 ydeR -1.6 -1.5 Uncharacterized fimbrial-like protein YdeR compare
MCAODC_23420 tnp-IS1 -1.6 -1.1 IS1 family transposase compare
MCAODC_20425 hisD -1.6 -4.4 Histidinol dehydrogenase compare
MCAODC_18900 mntP -1.6 -1.2 manganese efflux pump MntP compare
MCAODC_15595 trpB -1.6 -3.8 tryptophan synthase subunit beta compare
MCAODC_13180 cIII -1.6 -1.0 Protease inhibitor III compare
MCAODC_20355 yeeX -1.6 -1.7 DUF496 domain-containing protein compare
MCAODC_02745 purA -1.6 -1.3 adenylosuccinate synthase compare
MCAODC_18530 ynjA -1.6 -2.2 Uncharacterized protein YnjA compare
MCAODC_14285 -1.5 -1.4 hypothetical protein compare
MCAODC_04330 pfkA -1.5 -1.7 6-phosphofructokinase compare
MCAODC_25835 -1.5 -1.3 DUF1382 domain-containing protein compare
MCAODC_08660 pnp -1.5 -3.8 polyribonucleotide nucleotidyltransferase compare
MCAODC_10470 lysA -1.5 -7.3 diaminopimelate decarboxylase compare
MCAODC_26030 tolA -1.5 -2.4 cell envelope integrity protein TolA compare
MCAODC_10305 fliN -1.5 -2.6 YscQ/HrcQ family type III secretion apparatus protein compare
MCAODC_09620 -1.5 -1.6 adherence protein compare
MCAODC_08475 lptC -1.5 -2.9 LPS export ABC transporter periplasmic protein LptC compare
MCAODC_15720 yciH -1.5 -0.8 stress response translation initiation inhibitor YciH compare
MCAODC_27710 parD -1.5 -1.5 Antitoxin ParD compare
MCAODC_24140 gfcE -1.5 -4.7 Putative polysaccharide export protein GfcE compare
MCAODC_07150 acpP -1.5 -1.1 acyl carrier protein compare
MCAODC_22115 -1.5 -2.5 Tail completion protein Z compare
MCAODC_12310 yfgG -1.4 -2.8 Uncharacterized protein YfgG compare
MCAODC_19430 -1.4 -1.9 hypothetical protein compare
MCAODC_00195 proB -1.4 -2.9 Glutamate 5-kinase compare
MCAODC_00995 acnB -1.4 -1.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_13895 nuoE -1.4 -1.3 NADH-quinone oxidoreductase subunit NuoE compare
MCAODC_17175 -1.4 -1.7 replication protein compare
MCAODC_27825 aroL -1.4 -4.2 shikimate kinase AroL compare
MCAODC_20540 -1.4 -6.5 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
MCAODC_09775 yggS -1.4 -6.4 pyridoxal phosphate homeostasis protein compare
MCAODC_24145 etp -1.4 -3.2 protein-tyrosine-phosphatase Etp compare
MCAODC_04075 argH -1.4 -6.0 argininosuccinate lyase compare
MCAODC_19070 zwf -1.4 -2.6 glucose-6-phosphate dehydrogenase compare
MCAODC_14915 rusA -1.4 -1.5 crossover junction endodeoxyribonuclease RusA compare
MCAODC_11640 -1.4 -0.9 DinI-like protein Z3916/ECs3483 compare
MCAODC_20445 hisA -1.4 -1.8 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
MCAODC_13200 -1.4 -2.1 hypothetical protein compare
MCAODC_24055 -1.4 -1.3 YccE compare
MCAODC_20435 hisB -1.4 -4.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
MCAODC_02340 argF -1.4 -6.1 ornithine carbamoyltransferase compare
MCAODC_17860 rsxB -1.3 -2.3 electron transport complex subunit RsxB compare
MCAODC_14670 yohP -1.3 -1.2 protein YohP compare
MCAODC_17235 -1.3 -1.4 site-specific integrase compare
MCAODC_21540 -1.3 -1.4 hypothetical protein compare
MCAODC_18135 sufE -1.3 -0.7 cysteine desulfuration protein SufE compare
MCAODC_08970 yhaI -1.3 -0.9 Inner membrane protein YhaI compare
MCAODC_19425 -1.3 -1.5 Phage protein compare
MCAODC_15735 yciZ -1.3 -2.4 UPF0509 protein YciZ compare
MCAODC_21840 ychH -1.3 -2.3 stress-induced protein YchH compare
MCAODC_28035 lacI -1.3 -3.8 DNA-binding transcriptional repressor LacI compare
MCAODC_16725 fimA -1.3 -2.1 type 1 fimbrial major subunit FimA compare
MCAODC_23300 -1.3 -1.0 chemotaxis protein compare
MCAODC_13325 -1.3 -1.7 protein NinG compare
MCAODC_20525 wzy -1.3 -2.7 O157 family O-antigen polymerase compare
MCAODC_10585 argA -1.3 -5.4 amino-acid N-acetyltransferase compare
MCAODC_04605 glnL -1.3 -2.6 nitrogen regulation protein NR(II) compare
MCAODC_05135 ilvY -1.2 -5.6 HTH-type transcriptional activator IlvY compare
MCAODC_04235 hslV -1.2 -1.7 ATP-dependent protease subunit HslV compare
MCAODC_26995 fimZ -1.2 -2.1 fimbria biosynthesis transcriptional regulator FimZ compare
MCAODC_26065 cydA -1.2 -0.9 cytochrome ubiquinol oxidase subunit I compare
MCAODC_17600 -1.2 -1.3 Integrase, cryptic prophage CP-933P compare
MCAODC_07585 hslO -1.2 -3.5 Hsp33 family molecular chaperone HslO compare
MCAODC_23710 -1.2 -1.6 hypothetical protein compare
MCAODC_11400 ygaP -1.2 -1.2 thiosulfate sulfurtransferase YgaP compare
MCAODC_08400 gltD -1.2 -6.4 glutamate synthase subunit GltD compare
MCAODC_23890 fabG -1.2 -0.9 oxidoreductase compare
MCAODC_10400 -1.2 -0.8 Putative uncharacterized protein YgeF compare
MCAODC_00020 rzpD -1.2 -1.4 prophage endopeptidase RzpD compare
MCAODC_20965 oRF81 -1.2 -1.1 Uncharacterized protein in GpA 5'region compare
MCAODC_05825 grlR -1.2 -0.9 type III secretion system LEE GrlA-binding negative regulator GrlR compare
MCAODC_04600 glnA -1.2 -2.2 glutamate--ammonia ligase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in no phage control experiments

For no phage control No phage across organisms