Experiment set3S714 for Escherichia coli ECRC101

Compare to:

WM_Lambda

200 most important genes:

  gene name fitness t score description  
MCAODC_27055 purE -6.7 -4.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_03810 purH -5.7 -16.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_12340 purM -5.6 -8.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_12000 purL -5.5 -24.8 phosphoribosylformylglycinamidine synthase compare
MCAODC_03815 purD -5.4 -10.3 Phosphoribosylamine--glycine ligase compare
MCAODC_12290 guaB -5.4 -3.7 IMP dehydrogenase compare
MCAODC_21850 ychF -5.2 -2.0 redox-regulated ATPase YchF compare
MCAODC_13755 purF -5.1 -15.8 amidophosphoribosyltransferase compare
MCAODC_12460 purC -4.7 -7.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_12295 guaA -4.6 -3.2 glutamine-hydrolyzing GMP synthase compare
MCAODC_15720 yciH -4.5 -1.8 stress response translation initiation inhibitor YciH compare
MCAODC_13580 yfcZ -4.5 -1.8 UPF0381 protein YfcZ compare
MCAODC_27060 purK -4.5 -10.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_06270 cysE -4.3 -1.7 serine O-acetyltransferase compare
MCAODC_12335 purN -4.0 -12.0 phosphoribosylglycinamide formyltransferase compare
MCAODC_21670 galU -3.9 -2.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_12720 ptsI -3.8 -2.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_06205 rfaF -3.7 -2.5 ADP-heptose--LPS heptosyltransferase RfaF compare
MCAODC_01715 serB -3.6 -7.3 phosphoserine phosphatase compare
MCAODC_02550 cysQ -3.5 -8.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_13750 cvpA -3.5 -5.9 colicin V production protein compare
MCAODC_26040 tolQ -3.4 -3.3 Tol-Pal system protein TolQ compare
MCAODC_19155 nudB -3.1 -4.5 dihydroneopterin triphosphate diphosphatase compare
MCAODC_10290 -3.0 -1.7 type III secretion protein compare
MCAODC_08640 rbfA -2.9 -4.0 30S ribosome-binding factor RbfA compare
MCAODC_24880 serC -2.9 -10.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_20475 perB -2.9 -3.9 GDP-perosamine N-acetyltransferase compare
MCAODC_26805 fepD -2.7 -5.6 ferrienterobactin ABC transporter permease compare
MCAODC_00860 dksA -2.6 -8.0 RNA polymerase-binding protein DksA compare
MCAODC_00995 acnB -2.6 -1.8 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_21865 ldcA -2.5 -3.4 muramoyltetrapeptide carboxypeptidase compare
MCAODC_10975 cysC -2.5 -11.2 Adenylyl-sulfate kinase compare
MCAODC_10905 cysH -2.5 -5.6 phosphoadenosine phosphosulfate reductase compare
MCAODC_24775 aspC -2.5 -3.3 aspartate transaminase compare
MCAODC_08595 secG -2.4 -1.3 preprotein translocase subunit SecG compare
MCAODC_21025 gatB -2.4 -1.3 PTS galactitol transporter subunit IIB compare
MCAODC_21590 yciI -2.4 -2.1 YciI family protein compare
MCAODC_18450 chbB -2.4 -1.6 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
MCAODC_04330 pfkA -2.3 -2.7 6-phosphofructokinase compare
MCAODC_01110 secM -2.3 -2.2 secA translation cis-regulator SecM compare
MCAODC_20460 wzzB -2.3 -6.5 LPS O-antigen chain length determinant protein WzzB compare
MCAODC_04265 zapB -2.2 -1.5 septal ring assembly protein ZapB compare
MCAODC_02745 purA -2.2 -2.0 adenylosuccinate synthase compare
MCAODC_23655 -2.2 -1.5 hypothetical protein compare
MCAODC_16435 yncG -2.2 -1.8 Uncharacterized GST-like protein YncG compare
MCAODC_26030 tolA -2.2 -3.2 cell envelope integrity protein TolA compare
MCAODC_06195 rfaL -2.2 -5.7 O-antigen ligase RfaL compare
MCAODC_15160 tap -2.2 -1.8 RepA leader peptide Tap compare
MCAODC_11930 lepA -2.2 -2.9 translation elongation factor 4 compare
MCAODC_27560 clpP -2.2 -2.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
MCAODC_10900 cysI -2.1 -6.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_17105 -2.1 -1.9 TrmB family transcriptional regulator compare
MCAODC_09980 serA -2.1 -7.2 phosphoglycerate dehydrogenase compare
MCAODC_21155 metG -2.1 -2.5 methionine--tRNA ligase compare
MCAODC_23435 -2.1 -1.6 Oligogalacturonate-specific porin protein KdgM compare
MCAODC_13235 -2.0 -2.8 Replication protein O compare
MCAODC_04590 typA -2.0 -9.3 ribosome-dependent GTPase TypA compare
MCAODC_27555 clpX -2.0 -2.6 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_10895 cysJ -1.9 -8.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_28545 alpA -1.9 -1.8 AlpA family transcriptional regulator compare
MCAODC_06190 rfaB -1.9 -3.8 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
MCAODC_19490 gpA1 -1.9 -2.4 Phage terminase, large subunit GpA compare
MCAODC_14895 ybcM -1.9 -1.7 Uncharacterized HTH-type transcriptional regulator YbcM compare
MCAODC_06955 pitA -1.9 -2.6 inorganic phosphate transporter PitA compare
MCAODC_01360 apaH -1.9 -1.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_15510 yubL -1.9 -0.7 UPF0401 protein YubL compare
MCAODC_15520 psiB -1.8 -2.7 conjugation system SOS inhibitor PsiB compare
MCAODC_18940 prc -1.8 -7.2 carboxy terminal-processing peptidase compare
MCAODC_05085 wecA -1.8 -10.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_08475 lptC -1.8 -2.0 LPS export ABC transporter periplasmic protein LptC compare
MCAODC_26145 sucA -1.8 -3.3 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_16225 -1.8 -2.7 hypothetical protein compare
MCAODC_20525 wzy -1.8 -5.6 O157 family O-antigen polymerase compare
MCAODC_20200 rfaF -1.8 -2.9 Glycosyltransferase family 9 (heptosyltransferase) compare
MCAODC_15895 ycjN -1.8 -1.9 Putative ABC transporter periplasmic-binding protein YcjN compare
MCAODC_14915 rusA -1.7 -1.5 crossover junction endodeoxyribonuclease RusA compare
MCAODC_23610 -1.7 -1.6 Transposase compare
MCAODC_22925 fabF -1.7 -1.4 beta-ketoacyl-ACP synthase II compare
MCAODC_15150 repA2 -1.7 -5.7 Replication regulatory protein repA2 compare
MCAODC_16255 ydcA -1.7 -2.5 Uncharacterized protein YdcA compare
MCAODC_13720 accD -1.7 -1.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
MCAODC_11890 srmB -1.7 -5.1 ATP-dependent RNA helicase SrmB compare
MCAODC_26025 tolB -1.6 -4.5 Tol-Pal system protein TolB compare
MCAODC_16895 ydeI -1.6 -1.2 YdeI family stress tolerance OB fold protein compare
MCAODC_18980 pphA -1.6 -2.2 protein-serine/threonine phosphatase compare
MCAODC_05420 -1.6 -2.8 Putative type III effector protein compare
MCAODC_26815 fepC -1.6 -2.2 ferrienterobactin ABC transporter ATPase compare
MCAODC_04185 metJ -1.5 -1.9 met regulon transcriptional regulator MetJ compare
MCAODC_24965 lrp -1.5 -5.3 leucine-responsive transcriptional regulator Lrp compare
MCAODC_05400 pstB -1.5 -1.5 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_08660 pnp -1.5 -4.5 polyribonucleotide nucleotidyltransferase compare
MCAODC_20540 -1.5 -7.5 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
MCAODC_18125 lpp -1.5 -1.0 murein lipoprotein Lpp compare
MCAODC_06525 yiaG -1.5 -1.8 HTH-type transcriptional regulator compare
MCAODC_15025 -1.5 -2.1 recombinase RecA compare
MCAODC_18270 ppsR -1.5 -2.0 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR compare
MCAODC_06165 rfaG -1.5 -3.7 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_26810 fepG -1.5 -4.0 iron-enterobactin ABC transporter permease compare
MCAODC_19060 kdgA -1.4 -1.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
MCAODC_12270 bamB -1.4 -4.5 outer membrane protein assembly factor BamB compare
MCAODC_15450 -1.4 -2.0 hypothetical protein compare
MCAODC_05575 yidQ -1.4 -1.4 Uncharacterized protein YidQ compare
MCAODC_22960 yceD -1.4 -2.3 23S rRNA accumulation protein YceD compare
MCAODC_15715 pyrF -1.4 -2.6 orotidine-5'-phosphate decarboxylase compare
MCAODC_08200 fis -1.4 -1.7 DNA-binding transcriptional regulator Fis compare
MCAODC_27545 -1.3 -3.5 Lon protease compare
MCAODC_23045 flgM -1.3 -0.9 anti-sigma-28 factor FlgM compare
MCAODC_19425 -1.3 -2.7 Phage protein compare
MCAODC_22980 rne -1.3 -3.0 ribonuclease E compare
MCAODC_06175 waaO -1.3 -3.9 lipopolysaccharide 3-alpha-galactosyltransferase compare
MCAODC_15430 sopA -1.3 -2.0 plasmid-partitioning protein SopA compare
MCAODC_19520 -1.3 -2.0 phage tail protein compare
MCAODC_01615 thrC -1.3 -4.7 threonine synthase compare
MCAODC_27710 parD -1.3 -1.6 Antitoxin ParD compare
MCAODC_06170 rfaP -1.3 -2.3 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_26995 fimZ -1.3 -2.3 fimbria biosynthesis transcriptional regulator FimZ compare
MCAODC_26380 nagA -1.3 -4.7 N-acetylglucosamine-6-phosphate deacetylase compare
MCAODC_05985 -1.3 -1.0 Aec79 compare
MCAODC_22495 -1.2 -0.9 CP4-44 prophage putative disrupted hemin or colicin receptor compare
MCAODC_10320 sctT -1.2 -2.4 type III secretion system export apparatus subunit SctT compare
MCAODC_13145 -1.2 -1.3 Cell division protein ZapA compare
MCAODC_06185 rfaJ -1.2 -4.9 glucosyltransferase compare
MCAODC_24120 -1.2 -1.7 Threonine-rich inner membrane protein GfcA compare
MCAODC_24360 -1.2 -1.2 hypothetical protein compare
MCAODC_05790 escK -1.2 -1.7 type III secretion system sorting platform component compare
MCAODC_17245 iS285 -1.2 -1.6 IS256 family transposase compare
MCAODC_24055 -1.2 -1.4 YccE compare
MCAODC_19750 dsrB -1.2 -0.6 protein DsrB compare
MCAODC_02335 rraB -1.2 -3.4 ribonuclease E inhibitor RraB compare
MCAODC_16135 hslJ -1.2 -1.9 heat shock protein HslJ compare
MCAODC_23535 terW -1.2 -0.9 tellurium resistance protein TerW compare
MCAODC_26795 fepB -1.2 -3.5 ferrienterobactin ABC transporter periplasmic binding protein compare
MCAODC_16950 nleG2-3 -1.2 -1.7 DUF1076 domain-containing protein compare
MCAODC_22155 gpA1 -1.1 -2.7 terminase compare
MCAODC_17175 -1.1 -1.9 replication protein compare
MCAODC_15505 ssb -1.1 -2.5 single-stranded DNA-binding protein compare
MCAODC_18945 proQ -1.1 -1.4 RNA chaperone ProQ compare
MCAODC_23280 yeeS -1.1 -0.9 UPF0758 protein YeeS compare
MCAODC_28035 lacI -1.1 -2.9 DNA-binding transcriptional repressor LacI compare
MCAODC_26020 pal -1.1 -2.0 peptidoglycan-associated lipoprotein Pal compare
MCAODC_15865 pspB -1.1 -1.1 envelope stress response membrane protein PspB compare
MCAODC_18295 nlpC -1.1 -1.6 putative endopeptidase NlpC compare
MCAODC_04650 polA -1.1 -0.9 DNA polymerase I compare
MCAODC_20605 wcaE -1.0 -1.0 colanic acid biosynthesis glycosyltransferase WcaE compare
MCAODC_09480 exbB -1.0 -3.6 tol-pal system-associated acyl-CoA thioesterase compare
MCAODC_20355 yeeX -1.0 -1.9 DUF496 domain-containing protein compare
MCAODC_19430 -1.0 -1.1 hypothetical protein compare
MCAODC_21995 menH -1.0 -2.1 alpha/beta hydrolase compare
MCAODC_21540 -1.0 -1.4 hypothetical protein compare
MCAODC_16475 pptA -1.0 -1.3 tautomerase PptA compare
MCAODC_07005 hicB -1.0 -3.1 toxin-antitoxin system HicB family antitoxin compare
MCAODC_21515 -1.0 -0.8 transcriptional regulator compare
MCAODC_19005 yobA -1.0 -1.6 CopC domain-containing protein YobA compare
MCAODC_13285 -1.0 -2.9 Putitave protein compare
MCAODC_11910 rseA -1.0 -1.5 anti-sigma-E factor RseA compare
MCAODC_25785 -1.0 -0.9 DUF3927 domain-containing protein compare
MCAODC_23260 -1.0 -0.8 toxin compare
MCAODC_13710 truA -1.0 -2.2 aspartate-semialdehyde dehydrogenase compare
MCAODC_08710 yhbQ -1.0 -2.1 DNA damage response exodeoxyribonuclease YhbQ compare
MCAODC_07520 -1.0 -1.9 NfuA family Fe-S biogenesis protein compare
MCAODC_05950 escF -1.0 -1.0 type III secretion system LEE needle filament protein EscF compare
MCAODC_18485 astE -1.0 -1.4 succinylglutamate desuccinylase compare
MCAODC_00800 yadW -1.0 -1.2 Protein YadW compare
MCAODC_14670 yohP -1.0 -0.8 protein YohP compare
MCAODC_20145 -1.0 -1.4 DUF1391 domain-containing protein compare
MCAODC_24475 -1.0 -1.1 hypothetical protein compare
MCAODC_07175 -0.9 -2.6 hypothetical protein compare
MCAODC_11285 gshA -0.9 -3.5 glutamate--cysteine ligase compare
MCAODC_13455 -0.9 -1.7 hypothetical protein compare
MCAODC_15830 puuD -0.9 -2.3 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
MCAODC_23330 -0.9 -1.7 putative transposase of insertion sequence IS682 compare
MCAODC_19350 azuC -0.9 -2.1 stress response protein AzuC compare
MCAODC_13425 -0.9 -3.2 terminase compare
MCAODC_05850 escJ -0.9 -2.2 type III secretion system LEE inner membrane ring protein EscJ compare
MCAODC_10355 escJ -0.9 -1.2 EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein compare
MCAODC_26835 fes -0.9 -3.6 enterobactin/ferric enterobactin esterase compare
MCAODC_15210 insA -0.9 -1.8 Transposase InsA compare
MCAODC_16615 ddpB -0.9 -2.5 putative D,D-dipeptide transport system permease protein DdpB compare
MCAODC_27810 ppnP -0.9 -1.7 pyrimidine/purine nucleoside phosphorylase compare
MCAODC_21675 rssB -0.9 -2.0 two-component system response regulator RssB compare
MCAODC_02405 treC -0.9 -1.2 alpha,alpha-phosphotrehalase compare
MCAODC_05830 grlA -0.9 -1.7 type III secretion system LEE transcriptional regulator GrlA compare
MCAODC_04600 glnA -0.9 -2.0 glutamate--ammonia ligase compare
MCAODC_14790 -0.9 -1.1 DUF1382 domain-containing protein compare
MCAODC_26050 ybgE -0.9 -2.2 cyd operon protein YbgE compare
MCAODC_13255 -0.9 -3.0 hypothetical protein compare
MCAODC_18670 yeaC -0.9 -0.6 Uncharacterized protein YeaC compare
MCAODC_21330 -0.9 -1.3 phage tail protein compare
MCAODC_26130 sucD -0.9 -2.7 succinate--CoA ligase subunit alpha compare
MCAODC_20485 manC2 -0.9 -0.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
MCAODC_20480 cpsG -0.9 -0.8 colanic acid biosynthesis phosphomannomutase CpsG compare
MCAODC_08790 -0.9 -2.5 Putative galactosamine-6-phosphate isomerase compare
MCAODC_05995 -0.8 -0.6 toxin compare
MCAODC_06240 envC -0.8 -4.3 murein hydrolase activator EnvC compare
MCAODC_26375 nagB -0.8 -4.5 glucosamine-6-phosphate deaminase compare
MCAODC_17700 mdtI -0.8 -0.8 multidrug/spermidine efflux SMR transporter subunit MdtI compare
MCAODC_01460 carA -0.8 -3.7 carbamoyl phosphate synthase small subunit compare
MCAODC_13595 sixA -0.8 -1.0 phosphohistidine phosphatase SixA compare
MCAODC_11510 -0.8 -2.6 Procyclic acidic repetitive protein (PARP) compare
MCAODC_24450 ybbA -0.8 -1.0 iroE compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage Phage across organisms