Experiment set3S684 for Escherichia coli ECRC101

Compare to:

Bas14

200 most important genes:

  gene name fitness t score description  
MCAODC_08200 fis -6.5 -3.0 DNA-binding transcriptional regulator Fis compare
MCAODC_20220 Asn_trna -5.2 -1.4 tRNA-Asn(gtt) compare
MCAODC_08595 secG -5.0 -1.4 preprotein translocase subunit SecG compare
MCAODC_06270 cysE -4.8 -1.3 serine O-acetyltransferase compare
MCAODC_08450 ptsN -4.7 -2.9 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_13595 sixA -4.4 -1.7 phosphohistidine phosphatase SixA compare
MCAODC_27385 ybaB -4.4 -1.7 YbaB/EbfC family nucleoid-associated protein compare
MCAODC_21670 galU -4.4 -3.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_02745 purA -4.3 -2.4 adenylosuccinate synthase compare
MCAODC_06205 rfaF -4.2 -2.8 ADP-heptose--LPS heptosyltransferase RfaF compare
MCAODC_05400 pstB -3.7 -2.4 phosphate ABC transporter ATP-binding protein PstB compare
MCAODC_27555 clpX -3.5 -2.4 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_28545 alpA -3.4 -1.8 AlpA family transcriptional regulator compare
MCAODC_01340 surA -3.4 -4.7 peptidylprolyl isomerase SurA compare
MCAODC_15400 ccdB -3.2 -1.2 type II toxin-antitoxin system toxin CcdB compare
MCAODC_23445 -3.0 -1.5 hypothetical protein compare
MCAODC_11930 lepA -2.9 -3.0 translation elongation factor 4 compare
MCAODC_09425 ftsP -2.9 -2.9 cell division protein FtsP compare
MCAODC_21675 rssB -2.8 -3.9 two-component system response regulator RssB compare
MCAODC_11660 rnfH -2.7 -5.3 RnfH family protein compare
MCAODC_19430 -2.7 -3.4 hypothetical protein compare
MCAODC_00680 skp -2.7 -3.3 molecular chaperone Skp compare
MCAODC_15435 sopA -2.7 -1.8 plasmid-partitioning protein SopA compare
MCAODC_26040 tolQ -2.7 -2.5 Tol-Pal system protein TolQ compare
MCAODC_04330 pfkA -2.6 -2.2 6-phosphofructokinase compare
MCAODC_12825 pdeA -2.5 -11.0 putative cyclic di-GMP phosphodiesterase PdeA compare
MCAODC_04590 typA -2.4 -9.1 ribosome-dependent GTPase TypA compare
MCAODC_22960 yceD -2.4 -2.7 23S rRNA accumulation protein YceD compare
MCAODC_20475 perB -2.4 -3.8 GDP-perosamine N-acetyltransferase compare
MCAODC_02435 yjgA -2.3 -7.4 ribosome-associated protein compare
MCAODC_08130 Thr_trna -2.3 -1.1 tRNA-Thr(ggt) compare
MCAODC_18440 chbA -2.2 -1.4 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
MCAODC_24060 -2.1 -1.2 YccE compare
MCAODC_08900 yhaB -2.1 -1.3 Uncharacterized protein YhaB compare
MCAODC_13910 nuoH -2.1 -4.0 NADH-quinone oxidoreductase subunit NuoH compare
MCAODC_14730 yohO -2.1 -1.8 protein YohO compare
MCAODC_21850 ychF -2.0 -1.2 redox-regulated ATPase YchF compare
MCAODC_27545 -1.9 -4.4 Lon protease compare
MCAODC_08205 dusB -1.8 -6.0 tRNA dihydrouridine synthase DusB compare
MCAODC_12720 ptsI -1.8 -1.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_00860 dksA -1.8 -6.0 RNA polymerase-binding protein DksA compare
MCAODC_23300 -1.8 -1.1 chemotaxis protein compare
MCAODC_19060 kdgA -1.8 -1.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
MCAODC_04760 fre -1.7 -4.2 NAD(P)H-flavin reductase compare
MCAODC_24120 -1.7 -1.5 Threonine-rich inner membrane protein GfcA compare
MCAODC_05995 -1.7 -0.8 toxin compare
MCAODC_17155 -1.7 -1.8 Prophage protein compare
MCAODC_19090 lpxM -1.7 -3.6 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
MCAODC_18220 ydiF -1.7 -3.0 Acetate CoA-transferase YdiF compare
MCAODC_14285 -1.7 -1.5 hypothetical protein compare
MCAODC_04185 metJ -1.6 -2.3 met regulon transcriptional regulator MetJ compare
MCAODC_23480 terD -1.6 -1.4 tellurium resistance membrane protein TerD compare
MCAODC_14235 rcsB -1.6 -4.5 transcriptional regulator RcsB compare
MCAODC_13325 -1.6 -1.9 protein NinG compare
MCAODC_11890 srmB -1.6 -4.4 ATP-dependent RNA helicase SrmB compare
MCAODC_25285 yiaG -1.6 -3.2 transcriptional regulator compare
MCAODC_03490 -1.5 -0.8 phage tail protein compare
MCAODC_15150 repA2 -1.5 -5.8 Replication regulatory protein repA2 compare
MCAODC_17105 -1.5 -1.4 TrmB family transcriptional regulator compare
MCAODC_10335 csgD -1.5 -1.2 LuxR family transcriptional regulator compare
MCAODC_26145 sucA -1.5 -2.7 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_21025 gatB -1.5 -0.9 PTS galactitol transporter subunit IIB compare
MCAODC_21525 -1.5 -1.1 hypothetical protein compare
MCAODC_06165 rfaG -1.5 -3.6 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_25195 -1.5 -1.1 DUF1418 domain-containing protein compare
MCAODC_25085 ybjQ -1.5 -1.8 UPF0145 protein YbjQ compare
MCAODC_21955 minC -1.5 -3.2 septum site-determining protein MinC compare
MCAODC_08445 rapZ -1.5 -4.5 RNase adapter RapZ compare
MCAODC_07455 glpD -1.5 -3.5 glycerol-3-phosphate dehydrogenase compare
MCAODC_17860 rsxB -1.5 -1.5 electron transport complex subunit RsxB compare
MCAODC_11320 ygaZ -1.5 -4.5 L-valine exporter subunit YgaZ compare
MCAODC_27560 clpP -1.4 -1.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
MCAODC_19490 gpA1 -1.4 -2.1 Phage terminase, large subunit GpA compare
MCAODC_00050 ybcO -1.4 -1.1 Putative nuclease YbcO compare
MCAODC_09320 tolC -1.4 -5.1 outer membrane channel protein TolC compare
MCAODC_21155 metG -1.4 -1.9 methionine--tRNA ligase compare
MCAODC_00995 acnB -1.4 -1.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_12145 iscR -1.3 -2.3 Fe-S cluster assembly transcriptional regulator IscR compare
MCAODC_12270 bamB -1.3 -3.2 outer membrane protein assembly factor BamB compare
MCAODC_23540 -1.3 -2.1 IS66 family insertion sequence hypothetical protein compare
MCAODC_03610 -1.3 -1.9 sugar ABC transporter compare
MCAODC_14885 ybcK -1.3 -1.3 Uncharacterized protein YbcK compare
MCAODC_18135 sufE -1.3 -0.8 cysteine desulfuration protein SufE compare
MCAODC_10330 flhB -1.3 -1.2 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
MCAODC_08640 rbfA -1.3 -2.4 30S ribosome-binding factor RbfA compare
MCAODC_12815 Ala_trna -1.3 -1.9 tRNA-Ala(ggc) compare
MCAODC_16135 hslJ -1.3 -1.6 heat shock protein HslJ compare
MCAODC_11460 Ile2_trna -1.3 -1.5 tRNA-Ile2(cat) compare
MCAODC_05285 mioC -1.3 -4.3 FMN-binding protein MioC compare
MCAODC_23345 -1.3 -1.4 hypothetical protein compare
MCAODC_09825 speA -1.2 -4.5 biosynthetic arginine decarboxylase compare
MCAODC_02335 rraB -1.2 -3.0 ribonuclease E inhibitor RraB compare
MCAODC_05490 -1.2 -1.2 hypothetical protein compare
MCAODC_16945 nleG6-2 -1.2 -0.8 DUF1076 domain-containing protein compare
MCAODC_22925 fabF -1.2 -0.7 beta-ketoacyl-ACP synthase II compare
MCAODC_17610 ynfA -1.2 -1.1 YnfA family protein compare
MCAODC_01360 apaH -1.2 -1.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_24205 -1.2 -1.2 hypothetical protein compare
MCAODC_21515 -1.2 -0.8 transcriptional regulator compare
MCAODC_20380 yeeD -1.2 -3.4 Putative sulfur carrier protein YeeD compare
MCAODC_19070 zwf -1.2 -1.5 glucose-6-phosphate dehydrogenase compare
MCAODC_13350 Arg_trna -1.2 -1.6 tRNA-Arg(tct) compare
MCAODC_18205 uhpC -1.2 -1.6 MFS transporter compare
MCAODC_10780 mazE -1.2 -0.9 type II toxin-antitoxin system antitoxin MazE compare
MCAODC_10025 pepP -1.1 -5.2 Xaa-Pro aminopeptidase compare
MCAODC_15865 pspB -1.1 -1.0 envelope stress response membrane protein PspB compare
MCAODC_04770 rfaH -1.1 -2.4 transcription/translation regulatory transformer protein RfaH compare
MCAODC_05390 pstC -1.1 -4.1 phosphate ABC transporter permease PstC compare
MCAODC_09085 higA -1.1 -0.7 type II toxin-antitoxin system antitoxin HigA compare
MCAODC_21750 ychN -1.1 -2.5 DsrE/F sulfur relay family protein YchN compare
MCAODC_20135 -1.1 -1.6 cell division protein compare
MCAODC_22495 -1.1 -0.8 CP4-44 prophage putative disrupted hemin or colicin receptor compare
MCAODC_13385 -1.1 -1.5 DUF826 domain-containing protein compare
MCAODC_20620 wcaB -1.1 -3.1 colanic acid biosynthesis acetyltransferase WcaB compare
MCAODC_16730 -1.1 -1.5 Protein HipA compare
MCAODC_11555 -1.1 -1.0 hypothetical protein compare
MCAODC_23370 -1.1 -1.2 Putative UvrD/REP helicase-like protein compare
MCAODC_11310 emrR -1.1 -2.6 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
MCAODC_14475 yeiW -1.1 -2.0 UPF0153 protein YeiW compare
MCAODC_15735 yciZ -1.1 -2.3 UPF0509 protein YciZ compare
MCAODC_08970 yhaI -1.1 -0.8 Inner membrane protein YhaI compare
MCAODC_15860 pspA -1.1 -2.7 phage shock protein PspA compare
MCAODC_18485 astE -1.1 -1.9 succinylglutamate desuccinylase compare
MCAODC_11635 espM2 -1.1 -0.7 T3SS effector guanine nucleotide exchange factor EspM2 compare
MCAODC_03260 ytcA -1.1 -0.9 Uncharacterized protein YtcA compare
MCAODC_06190 rfaB -1.1 -3.2 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
MCAODC_22850 ycfJ -1.1 -0.8 Uncharacterized protein YcfJ compare
MCAODC_26815 fepC -1.1 -2.1 ferrienterobactin ABC transporter ATPase compare
MCAODC_17655 dmsD -1.0 -1.3 Tat proofreading chaperone DmsD compare
MCAODC_18160 sufA -1.0 -3.0 Fe-S cluster assembly scaffold SufA compare
MCAODC_13625 -1.0 -1.7 Minor fimbrial subunit compare
MCAODC_15895 ycjN -1.0 -1.1 Putative ABC transporter periplasmic-binding protein YcjN compare
MCAODC_24775 aspC -1.0 -2.4 aspartate transaminase compare
MCAODC_19155 nudB -1.0 -1.4 dihydroneopterin triphosphate diphosphatase compare
MCAODC_16705 ydeR -1.0 -1.2 Uncharacterized fimbrial-like protein YdeR compare
MCAODC_09775 yggS -1.0 -4.1 pyridoxal phosphate homeostasis protein compare
MCAODC_05670 -1.0 -2.8 hypothetical protein compare
MCAODC_26025 tolB -1.0 -3.1 Tol-Pal system protein TolB compare
MCAODC_24420 ydiL -1.0 -0.9 CPBP family intramembrane metalloprotease compare
MCAODC_10325 sctT -1.0 -1.2 type III secretion system export apparatus subunit SctT compare
MCAODC_13905 nuoG -1.0 -3.3 NADH-quinone oxidoreductase subunit NuoG compare
MCAODC_15030 -1.0 -2.1 DNA breaking-rejoining protein compare
MCAODC_25120 -1.0 -1.4 hypothetical protein compare
MCAODC_06170 rfaP -1.0 -1.7 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_18475 ves -1.0 -1.6 environmental stress-induced protein Ves compare
MCAODC_28245 -1.0 -3.1 Putative transcriptional regulator LYSR-type compare
MCAODC_04060 sthA -1.0 -3.9 Si-specific NAD(P)(+) transhydrogenase compare
MCAODC_06160 rfaQ -1.0 -3.5 lipopolysaccharide core heptosyltransferase RfaQ compare
MCAODC_06955 pitA -1.0 -1.6 inorganic phosphate transporter PitA compare
MCAODC_19215 yecM -1.0 -1.2 VOC family protein compare
MCAODC_06240 envC -1.0 -3.8 murein hydrolase activator EnvC compare
MCAODC_16675 ydeM -1.0 -0.9 anaerobic sulfatase maturase compare
MCAODC_04235 hslV -1.0 -1.6 ATP-dependent protease subunit HslV compare
MCAODC_16230 ydcF -1.0 -2.4 Protein YdcF compare
MCAODC_26315 pgm -1.0 -5.5 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
MCAODC_15970 tpx -0.9 -2.7 thiol peroxidase compare
MCAODC_08660 pnp -0.9 -2.8 polyribonucleotide nucleotidyltransferase compare
MCAODC_09850 cmtB -0.9 -1.8 PTS mannitol transporter subunit IIA compare
MCAODC_06005 tnp-IS3 -0.9 -1.4 IS3 family transposase compare
MCAODC_08570 yhbY -0.9 -2.3 ribosome assembly RNA-binding protein YhbY compare
MCAODC_16635 dosP -0.9 -1.6 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
MCAODC_05065 rffG -0.9 -5.4 dTDP-glucose 4,6-dehydratase compare
MCAODC_04940 yifL -0.9 -2.4 Uncharacterized lipoprotein YifL compare
MCAODC_18755 yoaJ -0.9 -1.0 protein YoaJ compare
MCAODC_20155 -0.9 -1.0 DUF1482 domain-containing protein compare
MCAODC_25935 galE -0.9 -3.5 UDP-glucose 4-epimerase GalE compare
MCAODC_10275 -0.9 -1.9 YopN/LcrE/InvE/MxiC type III secretion system gatekeeper compare
MCAODC_23820 fabG -0.9 -1.4 3-oxoacyl-ACP reductase compare
MCAODC_08565 greA -0.9 -2.7 transcription elongation factor GreA compare
MCAODC_13915 nuoI -0.9 -1.8 NADH-quinone oxidoreductase subunit NuoI compare
MCAODC_12315 -0.9 -1.4 hypothetical protein compare
MCAODC_27835 proC -0.9 -2.7 pyrroline-5-carboxylate reductase compare
MCAODC_10265 araC -0.8 -0.9 AraC family transcriptional regulator compare
MCAODC_17905 pdxY -0.8 -1.6 pyridoxal kinase PdxY compare
MCAODC_18385 yniA -0.8 -1.5 putative ketoamine kinase YniA compare
MCAODC_11970 shoB -0.8 -0.8 Small toxic protein ShoB compare
MCAODC_20945 -0.8 -1.5 DUF676 domain-containing protein compare
MCAODC_00870 pcnB -0.8 -2.9 polynucleotide adenylyltransferase PcnB compare
MCAODC_20810 -0.8 -2.2 Tail tube protein compare
MCAODC_05085 wecA -0.8 -5.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_17160 -0.8 -2.6 hypothetical protein compare
MCAODC_15170 putA1 -0.8 -1.6 CopG family transcriptional regulator compare
MCAODC_20705 terY -0.8 -1.5 Uncharacterized protein YegL compare
MCAODC_18095 -0.8 -0.9 Putative oxidoreductase Fe-S subunit compare
MCAODC_17940 ydhI -0.8 -1.2 Uncharacterized protein YdhI compare
MCAODC_18815 fadD -0.8 -2.8 long-chain-fatty-acid--CoA ligase FadD compare
MCAODC_20190 -0.8 -0.9 hypothetical protein compare
MCAODC_22980 rne -0.8 -1.2 ribonuclease E compare
MCAODC_18600 sIMPL -0.8 -1.4 SIMPL domain-containing protein compare
MCAODC_15550 tra5 -0.8 -2.0 Transposase InsO and inactivated derivatives compare
MCAODC_15430 sopA -0.8 -1.6 plasmid-partitioning protein SopA compare
MCAODC_16170 pdxI -0.8 -1.1 pyridoxine 4-dehydrogenase compare
MCAODC_06885 -0.8 -1.7 YhiS compare
MCAODC_05785 cesAB -0.8 -1.1 chaperone for EspA and EspB compare
MCAODC_23795 fabB -0.8 -3.0 beta-ketoacyl synthase compare
MCAODC_19815 -0.8 -2.9 Outer membrane protein compare
MCAODC_21900 dsbB -0.8 -1.3 disulfide bond formation protein DsbB compare
MCAODC_01795 prfC -0.8 -3.3 peptide chain release factor 3 compare
MCAODC_25280 -0.8 -2.1 addiction module toxin RelE compare
MCAODC_23830 fhaC -0.8 -1.2 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage Phage across organisms