Experiment set3S661 for Escherichia coli ECOR38

Compare to:

Bas61

200 most important genes:

  gene name fitness t score description  
HEPCGN_16680 zapG -4.9 -2.9 Z-ring associated protein ZapG compare
HEPCGN_24875 ychF -4.2 -2.8 redox-regulated ATPase YchF compare
HEPCGN_21365 crr -4.0 -3.4 PTS glucose transporter subunit IIA compare
HEPCGN_12110 tuf -4.0 -1.2 elongation factor Tu compare
HEPCGN_26275 mddA -3.5 -2.9 L-methionine sulfoximine/L-methionine sulfone acetyltransferase compare
HEPCGN_00825 -3.4 -1.4 citrate lyase acyl carrier protein 1 compare
HEPCGN_21995 pta -3.2 -4.4 phosphate acetyltransferase compare
HEPCGN_20250 ratA -3.2 -2.1 type II toxin-antitoxin system toxin RatA compare
HEPCGN_08815 surA -3.2 -6.4 peptidylprolyl isomerase SurA compare
HEPCGN_01010 ubiF -3.2 -1.6 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_22885 cspD -3.2 -1.6 cold shock-like protein CspD compare
HEPCGN_02305 -3.1 -2.6 hypothetical protein compare
HEPCGN_03670 -3.0 -2.0 Putative bacterial toxin ydaT compare
HEPCGN_19255 rppH -2.9 -2.0 RNA pyrophosphohydrolase compare
HEPCGN_08460 acnB -2.8 -4.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_22075 nuoH -2.8 -2.3 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_13680 -2.8 -3.3 tRNA modification GTPase MnmE compare
HEPCGN_25320 -2.8 -1.9 Ybl58 compare
HEPCGN_14540 rfaF -2.7 -2.4 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_16670 degS -2.6 -1.8 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_14530 -2.6 -3.1 O-antigen ligase domain-containing protein compare
HEPCGN_19505 mazE -2.5 -2.5 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_20765 iscU -2.5 -1.0 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_22000 ackA -2.4 -3.2 acetate kinase compare
HEPCGN_07285 yaiY -2.3 -3.0 Inner membrane protein YaiY compare
HEPCGN_18630 tkt -2.2 -3.6 transketolase compare
HEPCGN_00595 cusF -2.2 -1.3 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF compare
HEPCGN_13500 mnmG -2.2 -7.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_17025 yrbN -2.1 -1.9 Uncharacterized protein YrbN compare
HEPCGN_16500 fis -2.1 -1.6 DNA-binding transcriptional regulator Fis compare
HEPCGN_08755 -2.1 -1.5 hypothetical protein compare
HEPCGN_02610 -2.1 -2.3 phage tail protein compare
HEPCGN_21870 usg -2.1 -4.2 aspartate-semialdehyde dehydrogenase compare
HEPCGN_12935 ubiE -2.1 -1.5 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_21370 ptsI -2.0 -4.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_06950 clpP -2.0 -4.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_00885 lipB -2.0 -2.7 lipoyl(octanoyl) transferase LipB compare
HEPCGN_21875 truA -2.0 -3.3 aspartate-semialdehyde dehydrogenase compare
HEPCGN_05340 chbR -2.0 -1.9 transcriptional regulator ChbR compare
HEPCGN_02135 -1.9 -1.0 hypothetical protein compare
HEPCGN_04015 fliR -1.8 -1.1 flagellar type III secretion system protein FliR compare
HEPCGN_13595 pstC -1.8 -3.5 phosphate ABC transporter permease PstC compare
HEPCGN_24740 fadR -1.7 -2.9 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_16345 trkA -1.7 -3.6 Trk system potassium transporter TrkA compare
HEPCGN_25805 pspD -1.6 -1.4 phage shock protein PspD compare
HEPCGN_04675 ruvC -1.6 -1.7 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_02310 -1.6 -1.6 DUF4752 domain-containing protein compare
HEPCGN_13290 wecA -1.6 -3.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_25995 ynaL -1.6 -2.0 Protein YnaL compare
HEPCGN_06205 -1.5 -0.9 DUF5051 domain-containing protein compare
HEPCGN_10840 tetR(B -1.5 -2.3 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_17495 Ile2_trna -1.5 -1.0 tRNA-Ile2(cat) compare
HEPCGN_03870 -1.5 -1.1 tail assembly protein compare
HEPCGN_08835 apaH -1.5 -5.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_08475 aceF -1.4 -1.2 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_05580 aroD -1.4 -1.4 3-dehydroquinate dehydratase compare
HEPCGN_23880 yceD -1.4 -1.9 23S rRNA accumulation protein YceD compare
HEPCGN_05480 nlpC -1.4 -1.2 putative endopeptidase NlpC compare
HEPCGN_20505 srmB -1.4 -5.3 ATP-dependent RNA helicase SrmB compare
HEPCGN_16835 kdsC -1.4 -3.0 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HEPCGN_20655 glyA -1.3 -1.8 serine hydroxymethyltransferase compare
HEPCGN_03905 zinT -1.3 -1.5 metal-binding protein ZinT compare
HEPCGN_06290 rem -1.3 -2.1 Uncharacterized protein Rem compare
HEPCGN_20930 -1.3 -1.2 DUF5384 domain-containing protein compare
HEPCGN_01100 uof -1.3 -0.7 fur leader peptide compare
HEPCGN_12205 sthA -1.3 -4.6 Si-specific NAD(P)(+) transhydrogenase compare
HEPCGN_20545 lepA -1.3 -3.5 translation elongation factor 4 compare
HEPCGN_14240 -1.3 -1.2 IS3 family transposase compare
HEPCGN_00215 -1.3 -1.0 DNA-binding protein compare
HEPCGN_15280 -1.2 -2.1 transcriptional regulator compare
HEPCGN_00570 nrfB -1.2 -1.3 phage adsorption protein NrfB compare
HEPCGN_10565 epmA -1.2 -2.1 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_20790 iscX -1.2 -1.4 Fe-S cluster assembly protein IscX compare
HEPCGN_20770 iscA -1.2 -1.4 iron-sulfur cluster assembly protein IscA compare
HEPCGN_11075 -1.2 -0.9 Phage-related protein compare
HEPCGN_12930 ubiJ -1.2 -1.9 ubiquinone biosynthesis protein UbiJ compare
HEPCGN_08480 aceE -1.2 -3.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_07810 prfH -1.2 -2.0 peptide chain release factor H compare
HEPCGN_05675 pykF -1.2 -0.8 pyruvate kinase PykF compare
HEPCGN_19725 flhA -1.2 -3.1 formate hydrogenlyase transcriptional activator FlhA compare
HEPCGN_23965 -1.2 -1.4 DUF1425 domain-containing protein compare
HEPCGN_00445 fII -1.2 -0.9 Head-tail connector protein FII compare
HEPCGN_07270 iraP -1.1 -2.6 anti-adapter protein IraP compare
HEPCGN_03755 -1.1 -0.9 DUF1327 domain-containing protein compare
HEPCGN_04030 fliO -1.1 -0.7 flagellar type III secretion system protein FliO compare
HEPCGN_19900 recA -1.1 -2.5 recombinase RecA compare
HEPCGN_03320 -1.1 -0.9 Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage compare
HEPCGN_26180 -1.1 -1.4 Ribosomal-protein-serine N-acetyltransferase compare
HEPCGN_23860 rne -1.1 -1.8 ribonuclease E compare
HEPCGN_21670 ipuB -1.1 -0.8 tyrosine-type DNA invertase IpuB compare
HEPCGN_15315 gorA -1.1 -4.4 glutathione-disulfide reductase compare
HEPCGN_13250 wzxE -1.1 -3.7 lipid III flippase WzxE compare
HEPCGN_07140 yajC -1.1 -0.8 preprotein translocase subunit YajC compare
HEPCGN_22930 trxB -1.1 -2.4 thioredoxin-disulfide reductase compare
HEPCGN_01960 yiaG -1.1 -2.3 transcriptional regulator compare
HEPCGN_15355 pitA -1.1 -4.6 inorganic phosphate transporter PitA compare
HEPCGN_15930 aroK -1.1 -0.8 shikimate kinase AroK compare
HEPCGN_00630 ybdJ -1.1 -1.2 Uncharacterized protein YbdJ compare
HEPCGN_26960 -1.1 -0.4 Putative DNA-invertase compare
HEPCGN_06120 bioD -1.1 -2.7 dethiobiotin synthase compare
HEPCGN_03265 yeeD -1.1 -1.7 Putative sulfur carrier protein YeeD compare
HEPCGN_16920 greA -1.1 -0.7 transcription elongation factor GreA compare
HEPCGN_25560 rluB -1.1 -2.7 23S rRNA pseudouridine(2605) synthase RluB compare
HEPCGN_06095 ydgU -1.1 -0.7 Uncharacterized protein YdgU compare
HEPCGN_05960 add -1.1 -2.6 adenosine deaminase compare
HEPCGN_01685 moaD -1.0 -1.4 molybdopterin synthase sulfur carrier subunit compare
HEPCGN_07985 gmhB -1.0 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_00390 -1.0 -2.0 hypothetical protein compare
HEPCGN_12350 metJ -1.0 -1.2 met regulon transcriptional regulator MetJ compare
HEPCGN_12860 trkH -1.0 -3.6 Trk system potassium transporter TrkH compare
HEPCGN_25795 pspB -1.0 -0.7 envelope stress response membrane protein PspB compare
HEPCGN_09895 -1.0 -0.7 Transposase compare
HEPCGN_24275 -1.0 -1.0 hypothetical protein compare
HEPCGN_06340 -1.0 -0.8 hypothetical protein compare
HEPCGN_03695 -1.0 -0.9 Uncharacterized protein YmfE compare
HEPCGN_10550 asd -1.0 -0.7 archaetidylserine decarboxylase compare
HEPCGN_01295 sdhA -1.0 -3.8 succinate dehydrogenase flavoprotein subunit compare
HEPCGN_06945 clpX -1.0 -3.0 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_25505 yciF -1.0 -1.0 Protein YciF compare
HEPCGN_10490 miaA -1.0 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HEPCGN_06330 cspF -1.0 -0.7 Cold shock-like protein CspF compare
HEPCGN_07800 gpt -1.0 -1.7 xanthine phosphoribosyltransferase compare
HEPCGN_26385 -1.0 -2.2 leucine Rich Repeat family protein compare
HEPCGN_26330 -0.9 -1.9 hypothetical protein compare
HEPCGN_16340 mscL -0.9 -3.3 large-conductance mechanosensitive channel protein MscL compare
HEPCGN_26260 ortT -0.9 -1.1 orphan toxin OrtT compare
HEPCGN_18165 kpsF -0.9 -2.0 Polysialic acid capsule expression protein compare
HEPCGN_13100 corA -0.9 -2.5 magnesium/cobalt transporter CorA compare
HEPCGN_07020 yajQ -0.9 -1.4 nucleotide binding protein YajQ compare
HEPCGN_02295 -0.9 -1.6 Ead/Ea22-like protein compare
HEPCGN_13165 cyaA -0.9 -3.8 class I adenylate cyclase compare
HEPCGN_01965 -0.9 -1.5 addiction module toxin RelE compare
HEPCGN_13605 pstB -0.9 -0.7 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_01285 sdhC -0.9 -2.3 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_06415 fimZ -0.9 -1.8 fimbria biosynthesis transcriptional regulator FimZ compare
HEPCGN_13590 pstS -0.9 -2.7 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_18580 gshB -0.9 -3.4 glutathione synthase compare
HEPCGN_24885 ychH -0.9 -2.0 stress-induced protein YchH compare
HEPCGN_06640 ybbJ -0.9 -1.0 Inner membrane protein YbbJ compare
HEPCGN_04740 zwf -0.9 -3.6 glucose-6-phosphate dehydrogenase compare
HEPCGN_25785 pspF -0.9 -2.5 phage shock protein operon transcriptional activator compare
HEPCGN_05190 ydjA -0.9 -2.6 NAD(P)H nitroreductase compare
HEPCGN_20570 pdxJ -0.9 -1.7 pyridoxine 5'-phosphate synthase compare
HEPCGN_25485 -0.9 -1.0 Ybl63 compare
HEPCGN_15945 dam -0.9 -1.4 adenine-specific DNA-methyltransferase compare
HEPCGN_05660 sufE -0.9 -1.0 cysteine desulfuration protein SufE compare
HEPCGN_22470 apbE -0.9 -1.7 FAD:protein FMN transferase ApbE compare
HEPCGN_26740 gpV -0.8 -2.8 phage baseplate assembly protein V compare
HEPCGN_24075 potA -0.8 -2.9 spermidine/putrescine ABC transporter ATP-binding protein PotA compare
HEPCGN_16660 mdh -0.8 -1.7 malate dehydrogenase compare
HEPCGN_01315 sucC -0.8 -1.7 ADP-forming succinate--CoA ligase subunit beta compare
HEPCGN_10455 nsrR -0.8 -3.4 nitric oxide-sensing transcriptional repressor NsrR compare
HEPCGN_20940 yfgG -0.8 -1.5 Uncharacterized protein YfgG compare
HEPCGN_03685 -0.8 -2.3 SMEK domain-containing protein compare
HEPCGN_02745 rcnA -0.8 -2.2 Nickel/cobalt efflux system RcnA compare
HEPCGN_24515 -0.8 -1.9 Putative lipoprotein compare
HEPCGN_26305 yncG -0.8 -2.4 Uncharacterized GST-like protein YncG compare
HEPCGN_24470 -0.8 -3.4 Phage-like protein compare
HEPCGN_13995 -0.8 -1.2 Uncharacterized protein YicS compare
HEPCGN_25910 ynaI -0.8 -2.3 low conductance mechanosensitive channel YnaI compare
HEPCGN_02330 -0.8 -1.1 hypothetical protein compare
HEPCGN_27055 fII -0.8 -0.6 Head-tail connector protein FII compare
HEPCGN_18750 argP -0.8 -2.4 DNA-binding transcriptional regulator ArgP compare
HEPCGN_08205 degP -0.8 -2.8 serine endoprotease DegP compare
HEPCGN_10620 epmB -0.8 -3.3 EF-P beta-lysylation protein EpmB compare
HEPCGN_22045 nuoA -0.8 -2.1 NADH-quinone oxidoreductase subunit NuoA compare
HEPCGN_27110 -0.8 -2.1 hypothetical protein compare
HEPCGN_18855 fldB -0.8 -2.6 flavodoxin FldB compare
HEPCGN_26530 yddA -0.8 -2.1 Inner membrane ABC transporter ATP-binding protein YddA compare
HEPCGN_14200 ccmK -0.8 -1.7 BMC domain-containing protein compare
HEPCGN_25800 pspC -0.8 -2.1 envelope stress response membrane protein PspC compare
HEPCGN_14775 yiaM -0.8 -1.7 2,3-diketo-L-gulonate TRAP transporter small permease YiaM compare
HEPCGN_03690 -0.8 -1.3 Tellurite resistance protein TehB compare
HEPCGN_06800 rsmS -0.8 -2.1 pleiotropic regulatory protein RsmS compare
HEPCGN_02625 -0.8 -1.1 damage-inducible protein DinI compare
HEPCGN_15800 -0.8 -3.0 NfuA family Fe-S biogenesis protein compare
HEPCGN_12340 metL -0.8 -4.6 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_05620 menI -0.8 -1.9 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
HEPCGN_07720 ykgK,ecpR -0.8 -1.6 regulator protein EcpR compare
HEPCGN_17485 nfeR -0.8 -1.7 DNA-binding transcriptional regulator NfeR compare
HEPCGN_03405 -0.8 -2.2 cytoplasmic protein compare
HEPCGN_26870 -0.8 -1.0 PTS cellobiose transporter subunit IIC compare
HEPCGN_08235 yadW -0.8 -1.2 Protein YadW compare
HEPCGN_01415 -0.8 -1.9 hypothetical protein compare
HEPCGN_17150 agaF -0.7 -1.2 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA compare
HEPCGN_20780 hscA -0.7 -1.2 Fe-S protein assembly chaperone HscA compare
HEPCGN_17470 ygjH -0.7 -2.8 tRNA-binding protein compare
HEPCGN_11880 -0.7 -1.0 hypothetical protein compare
HEPCGN_22270 rhmD -0.7 -2.0 L-rhamnonate dehydratase compare
HEPCGN_24370 -0.7 -1.5 DNA invertase compare
HEPCGN_04445 xerD -0.7 -2.0 integrase compare
HEPCGN_16385 aroE -0.7 -2.9 shikimate dehydrogenase compare
HEPCGN_01180 ybfA -0.7 -1.7 Uncharacterized protein YbfA compare
HEPCGN_22875 macA -0.7 -2.3 macrolide transporter subunit MacA compare
HEPCGN_12475 pfkA -0.7 -1.9 6-phosphofructokinase compare
HEPCGN_16540 -0.7 -2.3 sugar ABC transporter compare
HEPCGN_03330 yeeS -0.7 -0.6 UPF0758 protein YeeS compare
HEPCGN_22670 lpxT -0.7 -2.0 Kdo(2)-lipid A phosphotransferase compare
HEPCGN_18465 yggX -0.7 -2.5 oxidative damage protection protein compare
HEPCGN_08440 yacC -0.7 -2.3 YacC family pilotin-like protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms