Experiment set3S649 for Escherichia coli ECOR38

Compare to:

Bas45

200 most important genes:

  gene name fitness t score description  
HEPCGN_16680 zapG -4.9 -2.9 Z-ring associated protein ZapG compare
HEPCGN_02315 -4.9 -1.4 MarR family transcriptional regulator compare
HEPCGN_20585 shoB -4.8 -1.4 Small toxic protein ShoB compare
HEPCGN_06205 -4.8 -1.4 DUF5051 domain-containing protein compare
HEPCGN_25795 pspB -4.7 -1.4 envelope stress response membrane protein PspB compare
HEPCGN_16500 fis -4.4 -2.5 DNA-binding transcriptional regulator Fis compare
HEPCGN_05440 pheM -4.2 -1.2 pheST operon leader peptide PheM compare
HEPCGN_05675 pykF -4.1 -2.0 pyruvate kinase PykF compare
HEPCGN_08475 aceF -4.0 -2.3 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_22080 nuoI -3.6 -5.4 NADH-quinone oxidoreductase subunit NuoI compare
HEPCGN_22075 nuoH -3.5 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_15205 hdeA -3.3 -1.0 acid-activated periplasmic chaperone HdeA compare
HEPCGN_01010 ubiF -3.3 -1.6 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_25720 sapF -3.1 -1.1 peptide ABC transporter ATP-binding protein SapF compare
HEPCGN_08460 acnB -3.1 -5.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_00885 lipB -3.1 -3.2 lipoyl(octanoyl) transferase LipB compare
HEPCGN_27210 ccdB -3.0 -1.8 type II toxin-antitoxin system toxin CcdB compare
HEPCGN_12935 ubiE -3.0 -1.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_20770 iscA -3.0 -2.0 iron-sulfur cluster assembly protein IscA compare
HEPCGN_13605 pstB -2.9 -1.9 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_08480 aceE -2.8 -3.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_22065 nuoF -2.7 -6.3 NADH-quinone oxidoreductase subunit NuoF compare
HEPCGN_25640 lapA -2.7 -1.9 lipopolysaccharide assembly protein LapA compare
HEPCGN_24920 prmC -2.7 -3.4 peptide chain release factor N(5)-glutamine methyltransferase compare
HEPCGN_03670 -2.7 -2.0 Putative bacterial toxin ydaT compare
HEPCGN_16670 degS -2.7 -1.8 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_24695 ycgN -2.6 -2.4 YcgN family cysteine cluster protein compare
HEPCGN_06950 clpP -2.6 -5.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_21370 ptsI -2.5 -5.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_21870 usg -2.5 -4.2 aspartate-semialdehyde dehydrogenase compare
HEPCGN_04685 yobI -2.4 -1.0 Uncharacterized protein YobI compare
HEPCGN_22050 nuoB -2.4 -4.7 NADH-quinone oxidoreductase subunit NuoB compare
HEPCGN_01305 sucA -2.3 -5.1 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_04030 fliO -2.2 -1.1 flagellar type III secretion system protein FliO compare
HEPCGN_02310 -2.2 -2.1 DUF4752 domain-containing protein compare
HEPCGN_03655 -2.2 -2.9 hypothetical protein compare
HEPCGN_22000 ackA -2.1 -2.9 acetate kinase compare
HEPCGN_03755 -2.1 -1.3 DUF1327 domain-containing protein compare
HEPCGN_25600 cysB -2.1 -2.4 HTH-type transcriptional regulator CysB compare
HEPCGN_06095 ydgU -2.1 -1.0 Uncharacterized protein YdgU compare
HEPCGN_08815 surA -2.1 -3.7 peptidylprolyl isomerase SurA compare
HEPCGN_21995 pta -2.1 -3.6 phosphate acetyltransferase compare
HEPCGN_25930 ogt -2.0 -2.0 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HEPCGN_22100 nuoM -2.0 -5.8 NADH-quinone oxidoreductase subunit M compare
HEPCGN_23880 yceD -1.9 -2.5 23S rRNA accumulation protein YceD compare
HEPCGN_13500 mnmG -1.9 -6.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_13590 pstS -1.9 -4.3 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_17610 ibsD -1.9 -1.7 Small toxic protein IbsD compare
HEPCGN_05565 araC -1.9 -1.5 AraC family transcriptional regulator compare
HEPCGN_19255 rppH -1.9 -1.8 RNA pyrophosphohydrolase compare
HEPCGN_13595 pstC -1.9 -4.0 phosphate ABC transporter permease PstC compare
HEPCGN_22095 nuoL -1.8 -4.8 NADH-quinone oxidoreductase subunit L compare
HEPCGN_08840 -1.8 -2.5 Toxin CcdB compare
HEPCGN_08095 rnhB -1.8 -0.7 ribonuclease HII compare
HEPCGN_01320 sucD -1.8 -3.4 succinate--CoA ligase subunit alpha compare
HEPCGN_00215 -1.8 -1.2 DNA-binding protein compare
HEPCGN_21670 ipuB -1.8 -1.1 tyrosine-type DNA invertase IpuB compare
HEPCGN_22055 nuoC -1.8 -5.4 NADH-quinone oxidoreductase subunit C/D compare
HEPCGN_12860 trkH -1.8 -6.1 Trk system potassium transporter TrkH compare
HEPCGN_10460 purA -1.8 -4.7 adenylosuccinate synthase compare
HEPCGN_25995 ynaL -1.7 -2.1 Protein YnaL compare
HEPCGN_01300 sdhB -1.7 -3.8 succinate dehydrogenase iron-sulfur subunit SdhB compare
HEPCGN_19900 recA -1.7 -2.2 recombinase RecA compare
HEPCGN_08550 yacG -1.6 -0.8 DNA gyrase inhibitor YacG compare
HEPCGN_12350 metJ -1.6 -1.1 met regulon transcriptional regulator MetJ compare
HEPCGN_02305 -1.6 -1.8 hypothetical protein compare
HEPCGN_10565 epmA -1.6 -2.8 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_19505 mazE -1.6 -3.7 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_01295 sdhA -1.6 -5.9 succinate dehydrogenase flavoprotein subunit compare
HEPCGN_24005 bhsA -1.6 -1.2 multiple stress resistance protein BhsA compare
HEPCGN_00425 -1.6 -2.8 AlpA family transcriptional regulator compare
HEPCGN_03005 wzb -1.6 -1.6 low molecular weight protein-tyrosine-phosphatase Wzb compare
HEPCGN_23140 aspC -1.6 -2.9 aspartate transaminase compare
HEPCGN_21365 crr -1.6 -1.2 PTS glucose transporter subunit IIA compare
HEPCGN_17025 yrbN -1.6 -2.3 Uncharacterized protein YrbN compare
HEPCGN_20655 glyA -1.6 -1.9 serine hydroxymethyltransferase compare
HEPCGN_22930 trxB -1.5 -2.3 thioredoxin-disulfide reductase compare
HEPCGN_20765 iscU -1.5 -0.9 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_01310 odhB -1.5 -2.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
HEPCGN_03690 -1.5 -2.2 Tellurite resistance protein TehB compare
HEPCGN_18390 papF -1.5 -2.9 P fimbrial tip protein PapF compare
HEPCGN_24275 -1.5 -1.7 hypothetical protein compare
HEPCGN_26550 safA -1.5 -1.2 two-component system connector SafA compare
HEPCGN_00045 -1.5 -1.2 Arginyl-tRNA synthetase compare
HEPCGN_19955 gshA -1.5 -5.2 glutamate--cysteine ligase compare
HEPCGN_10435 yjfJ -1.5 -3.0 Uncharacterized protein YjfJ compare
HEPCGN_20545 lepA -1.4 -4.2 translation elongation factor 4 compare
HEPCGN_06115 mlc -1.4 -3.4 DNA-binding transcriptional repressor Mlc compare
HEPCGN_24590 -1.4 -0.9 hypothetical protein compare
HEPCGN_26710 spoIVCA -1.4 -2.5 DNA-invertase compare
HEPCGN_22105 nuoN -1.4 -4.4 NADH-quinone oxidoreductase subunit NuoN compare
HEPCGN_22045 nuoA -1.4 -1.8 NADH-quinone oxidoreductase subunit NuoA compare
HEPCGN_10840 tetR(B -1.4 -2.0 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_21875 truA -1.4 -3.0 aspartate-semialdehyde dehydrogenase compare
HEPCGN_24225 nudJ -1.4 -1.8 phosphatase NudJ compare
HEPCGN_12885 fre -1.4 -4.1 NAD(P)H-flavin reductase compare
HEPCGN_23600 -1.4 -2.6 GGDEF domain-containing protein compare
HEPCGN_25175 -1.4 -0.9 DUF1482 domain-containing protein compare
HEPCGN_08835 apaH -1.4 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_23860 rne -1.4 -2.8 ribonuclease E compare
HEPCGN_15950 rpe -1.4 -1.8 ribulose-phosphate 3-epimerase compare
HEPCGN_27265 traI -1.4 -2.0 conjugative transfer relaxase/helicase TraI compare
HEPCGN_06945 clpX -1.3 -3.5 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_13320 rep -1.3 -2.3 DNA helicase Rep compare
HEPCGN_01575 acrZ -1.3 -1.5 multidrug efflux pump accessory protein AcrZ compare
HEPCGN_02810 gatB -1.3 -1.0 PTS galactitol transporter subunit IIB compare
HEPCGN_21680 -1.3 -1.2 LuxR family transcriptional regulator compare
HEPCGN_16660 mdh -1.2 -2.6 malate dehydrogenase compare
HEPCGN_05580 aroD -1.2 -1.7 3-dehydroquinate dehydratase compare
HEPCGN_12205 sthA -1.2 -3.5 Si-specific NAD(P)(+) transhydrogenase compare
HEPCGN_01275 gltA -1.2 -3.5 citrate synthase compare
HEPCGN_00170 -1.2 -6.7 peptidyl-arginine deiminase compare
HEPCGN_26960 -1.2 -0.5 Putative DNA-invertase compare
HEPCGN_15935 aroB -1.2 -3.4 3-dehydroquinate synthase compare
HEPCGN_17030 deaD -1.2 -3.1 ATP-dependent RNA helicase DeaD compare
HEPCGN_15945 dam -1.2 -2.1 adenine-specific DNA-methyltransferase compare
HEPCGN_06135 dmsD -1.2 -1.0 Tat proofreading chaperone DmsD compare
HEPCGN_02010 ybjH -1.2 -0.9 Uncharacterized protein YbjH compare
HEPCGN_20250 ratA -1.1 -0.9 type II toxin-antitoxin system toxin RatA compare
HEPCGN_11080 cbtA -1.1 -0.8 type IV toxin-antitoxin system toxin CbtA compare
HEPCGN_24990 -1.1 -2.3 hypothetical protein compare
HEPCGN_10620 epmB -1.1 -3.9 EF-P beta-lysylation protein EpmB compare
HEPCGN_25445 -1.1 -1.5 phage tail protein compare
HEPCGN_03510 ycdB -1.1 -1.7 putative transcriptional regulatory protein YcdB compare
HEPCGN_08755 -1.1 -1.1 hypothetical protein compare
HEPCGN_16345 trkA -1.1 -2.8 Trk system potassium transporter TrkA compare
HEPCGN_06435 fimC -1.1 -2.1 type 1 fimbria chaperone FimC compare
HEPCGN_03680 -1.1 -2.8 DUF977 domain-containing protein compare
HEPCGN_20855 yfgM -1.1 -2.5 ancillary SecYEG translocon subunit YfgM compare
HEPCGN_23670 -1.1 -1.1 Uncharacterized protein YmdA compare
HEPCGN_11730 -1.1 -0.8 Conserved phage-related protein compare
HEPCGN_12560 frvA -1.1 -0.5 PTS fructose transporter subunit IIA compare
HEPCGN_10365 ulaD -1.1 -2.2 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
HEPCGN_06550 glxR -1.1 -0.9 2-hydroxy-3-oxopropionate reductase compare
HEPCGN_11405 -1.0 -2.0 Uncharacterized protein YjcO compare
HEPCGN_16655 argR -1.0 -3.7 transcriptional regulator ArgR compare
HEPCGN_17495 Ile2_trna -1.0 -0.8 tRNA-Ile2(cat) compare
HEPCGN_12720 typA -1.0 -5.4 ribosome-dependent GTPase TypA compare
HEPCGN_23620 ycdY -1.0 -1.7 molecular chaperone YcdY compare
HEPCGN_01100 uof -1.0 -0.6 fur leader peptide compare
HEPCGN_15910 hofN -1.0 -1.0 Putative DNA utilization protein HofN compare
HEPCGN_24425 -1.0 -1.4 phage tail assembly protein compare
HEPCGN_14315 ptsN -1.0 -1.5 PTS fructose transporter subunit IIA compare
HEPCGN_12340 metL -1.0 -5.2 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_24285 -1.0 -1.1 cell division protein ZapA compare
HEPCGN_15930 aroK -1.0 -0.6 shikimate kinase AroK compare
HEPCGN_24520 -1.0 -1.2 lytic murein transglycosylase compare
HEPCGN_12790 -1.0 -0.5 hypothetical protein compare
HEPCGN_22070 nuoG -1.0 -2.9 NADH-quinone oxidoreductase subunit NuoG compare
HEPCGN_03405 -1.0 -2.6 cytoplasmic protein compare
HEPCGN_27390 -0.9 -5.1 transcriptional regulator compare
HEPCGN_26620 tam -0.9 -1.6 trans-aconitate 2-methyltransferase compare
HEPCGN_03320 -0.9 -0.8 Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage compare
HEPCGN_02830 yegS -0.9 -2.3 lipid kinase YegS compare
HEPCGN_04965 yoaB -0.9 -1.4 RutC family protein YoaB compare
HEPCGN_24685 ycgL -0.9 -1.4 Protein YcgL compare
HEPCGN_26060 ynbE -0.9 -0.9 YdbH family protein compare
HEPCGN_10655 aspA -0.9 -3.5 aspartate ammonia-lyase compare
HEPCGN_12815 yihD -0.9 -0.9 Protein YihD compare
HEPCGN_25045 rssB -0.9 -3.4 two-component system response regulator RssB compare
HEPCGN_06810 acrR -0.9 -3.0 multidrug efflux transporter transcriptional repressor AcrR compare
HEPCGN_26240 -0.9 -2.2 polyamine ABC transporter ATP-binding protein compare
HEPCGN_09815 fecB -0.9 -1.5 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB compare
HEPCGN_13600 pstA -0.9 -1.7 phosphate ABC transporter permease PstA compare
HEPCGN_21120 ypfN -0.9 -0.7 UPF0370 protein YpfN compare
HEPCGN_23965 -0.9 -0.6 DUF1425 domain-containing protein compare
HEPCGN_02135 -0.9 -0.6 hypothetical protein compare
HEPCGN_03395 -0.9 -0.7 Phosphotriesterase compare
HEPCGN_00370 -0.9 -0.9 Prophage CP4-57 regulatory protein (AlpA) compare
HEPCGN_00430 -0.9 -2.3 Uncharacterized protein api44 compare
HEPCGN_01060 nagC -0.8 -2.8 DNA-binding transcriptional regulator NagC compare
HEPCGN_15630 yrhA -0.8 -1.4 protein YrhA compare
HEPCGN_18620 speB -0.8 -2.2 agmatinase compare
HEPCGN_22515 napD -0.8 -0.7 chaperone NapD compare
HEPCGN_13160 cyaY -0.8 -2.3 iron donor protein CyaY compare
HEPCGN_09565 uxuR -0.8 -1.8 Uxu operon transcriptional regulator compare
HEPCGN_25855 pgmB -0.8 -2.2 beta-phosphoglucomutase compare
HEPCGN_22995 ycaN -0.8 -1.7 Uncharacterized HTH-type transcriptional regulator YcaN compare
HEPCGN_20505 srmB -0.8 -3.4 ATP-dependent RNA helicase SrmB compare
HEPCGN_26930 ydfG -0.8 -3.1 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
HEPCGN_16130 yheO -0.8 -2.3 Uncharacterized protein YheO compare
HEPCGN_18845 sdhE -0.8 -1.0 FAD assembly factor SdhE compare
HEPCGN_09005 -0.8 -2.1 fimbrial family protein compare
HEPCGN_06325 ynfS -0.8 -1.1 Protein YnfS compare
HEPCGN_14775 yiaM -0.8 -2.0 2,3-diketo-L-gulonate TRAP transporter small permease YiaM compare
HEPCGN_26905 mgtS -0.8 -0.6 protein MgtS compare
HEPCGN_22085 nuoJ -0.8 -1.5 NADH-quinone oxidoreductase subunit J compare
HEPCGN_01285 sdhC -0.8 -1.8 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_06120 bioD -0.8 -2.4 dethiobiotin synthase compare
HEPCGN_25595 -0.8 -2.0 type I DNA topoisomerase compare
HEPCGN_08710 leuD -0.8 -1.3 3-isopropylmalate dehydratase small subunit compare
HEPCGN_20945 -0.8 -1.1 hypothetical protein compare
HEPCGN_07520 araH -0.8 -2.6 sugar ABC transporter permease compare
HEPCGN_15355 pitA -0.8 -3.3 inorganic phosphate transporter PitA compare
HEPCGN_24100 -0.8 -0.8 host cell division inhibitor Icd-like protein compare
HEPCGN_12375 ftsN -0.8 -2.2 cell division protein FtsN compare
HEPCGN_09720 -0.8 -1.9 Prophage P4 integrase compare
HEPCGN_14415 pyrL -0.8 -0.5 Putative PyrE leader peptide compare
HEPCGN_04315 -0.8 -1.6 capsid assembly protein compare
HEPCGN_20780 hscA -0.8 -0.8 Fe-S protein assembly chaperone HscA compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms