Experiment set3S642 for Escherichia coli ECOR38

Compare to:

Control_ECOR38

200 most important genes:

  gene name fitness t score description  
HEPCGN_02315 -4.7 -1.3 MarR family transcriptional regulator compare
HEPCGN_01100 uof -4.4 -1.2 fur leader peptide compare
HEPCGN_03705 -4.4 -1.2 protein hokC compare
HEPCGN_02900 -4.1 -1.1 Type I toxin-antitoxin system Ibs family toxin compare
HEPCGN_08815 surA -3.9 -5.3 peptidylprolyl isomerase SurA compare
HEPCGN_25055 hns -3.7 -1.4 DNA-binding transcriptional regulator H-NS compare
HEPCGN_14540 rfaF -3.6 -2.3 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_16680 zapG -3.6 -2.3 Z-ring associated protein ZapG compare
HEPCGN_22075 nuoH -3.4 -2.3 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_06330 cspF -3.3 -1.2 Cold shock-like protein CspF compare
HEPCGN_23880 yceD -3.3 -3.5 23S rRNA accumulation protein YceD compare
HEPCGN_20250 ratA -3.2 -1.9 type II toxin-antitoxin system toxin RatA compare
HEPCGN_26960 -3.0 -0.8 Putative DNA-invertase compare
HEPCGN_22000 ackA -2.9 -2.8 acetate kinase compare
HEPCGN_12935 ubiE -2.9 -1.5 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_08460 acnB -2.9 -4.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_21365 crr -2.8 -2.3 PTS glucose transporter subunit IIA compare
HEPCGN_22885 cspD -2.7 -1.4 cold shock-like protein CspD compare
HEPCGN_01120 seqA -2.7 -1.8 replication initiation negative regulator SeqA compare
HEPCGN_21780 -2.6 -1.6 Fimbrial domain-containing protein compare
HEPCGN_16670 degS -2.5 -1.7 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_24005 bhsA -2.5 -1.3 multiple stress resistance protein BhsA compare
HEPCGN_13320 rep -2.5 -4.2 DNA helicase Rep compare
HEPCGN_26870 -2.4 -2.3 PTS cellobiose transporter subunit IIC compare
HEPCGN_08480 aceE -2.4 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_20905 guaA -2.3 -5.5 glutamine-hydrolyzing GMP synthase compare
HEPCGN_02610 -2.3 -2.1 phage tail protein compare
HEPCGN_25175 -2.2 -1.0 DUF1482 domain-containing protein compare
HEPCGN_10460 purA -2.2 -6.4 adenylosuccinate synthase compare
HEPCGN_25605 ymiA -2.2 -1.8 YmiA family putative membrane protein compare
HEPCGN_00885 lipB -2.2 -2.7 lipoyl(octanoyl) transferase LipB compare
HEPCGN_05860 slyA -2.2 -1.2 transcriptional regulator SlyA compare
HEPCGN_03670 -2.2 -1.6 Putative bacterial toxin ydaT compare
HEPCGN_26610 lsrF -2.0 -3.3 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
HEPCGN_05060 yeaO -2.0 -1.0 Uncharacterized protein YeaO compare
HEPCGN_15945 dam -2.0 -3.0 adenine-specific DNA-methyltransferase compare
HEPCGN_25600 cysB -2.0 -2.3 HTH-type transcriptional regulator CysB compare
HEPCGN_01010 ubiF -1.9 -1.1 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_02305 -1.9 -1.8 hypothetical protein compare
HEPCGN_24875 ychF -1.9 -1.7 redox-regulated ATPase YchF compare
HEPCGN_02975 dcd -1.9 -1.6 dCTP deaminase compare
HEPCGN_04030 fliO -1.9 -0.8 flagellar type III secretion system protein FliO compare
HEPCGN_08835 apaH -1.9 -4.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_03905 zinT -1.9 -1.5 metal-binding protein ZinT compare
HEPCGN_21475 -1.8 -1.2 RNA-guided endonuclease TnpB family protein compare
HEPCGN_13100 corA -1.8 -3.1 magnesium/cobalt transporter CorA compare
HEPCGN_03930 hprS -1.8 -1.5 two-component system sensor histidine kinase HprS compare
HEPCGN_11135 yjdJ -1.8 -1.5 Uncharacterized protein YjdJ compare
HEPCGN_02855 -1.8 -0.6 type II toxin-antitoxin system ParD family antitoxin compare
HEPCGN_16970 fMet_trna -1.7 -0.9 tRNA-fMet(cat) compare
HEPCGN_14320 frwB -1.7 -2.0 PTS fructose transporter subunit IIB compare
HEPCGN_18630 tkt -1.7 -3.2 transketolase compare
HEPCGN_20780 hscA -1.7 -2.3 Fe-S protein assembly chaperone HscA compare
HEPCGN_08745 thiQ -1.7 -2.9 thiamine ABC transporter ATP-binding protein ThiQ compare
HEPCGN_25720 sapF -1.7 -1.1 peptide ABC transporter ATP-binding protein SapF compare
HEPCGN_21870 usg -1.7 -2.8 aspartate-semialdehyde dehydrogenase compare
HEPCGN_21820 aroC -1.7 -2.4 chorismate synthase compare
HEPCGN_21995 pta -1.6 -2.9 phosphate acetyltransferase compare
HEPCGN_03415 -1.6 -0.8 DDE-Tnp-IS66-C domain-containing protein compare
HEPCGN_24740 fadR -1.6 -2.5 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_21875 truA -1.6 -3.1 aspartate-semialdehyde dehydrogenase compare
HEPCGN_20505 srmB -1.6 -5.2 ATP-dependent RNA helicase SrmB compare
HEPCGN_26085 pgsA -1.6 -2.7 CDP-alcohol phosphatidyltransferase compare
HEPCGN_23860 rne -1.6 -2.1 ribonuclease E compare
HEPCGN_16770 arcB -1.5 -2.1 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_20945 -1.5 -2.3 hypothetical protein compare
HEPCGN_22050 nuoB -1.5 -4.7 NADH-quinone oxidoreductase subunit NuoB compare
HEPCGN_13500 mnmG -1.5 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_00595 cusF -1.5 -0.9 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF compare
HEPCGN_04350 mraW -1.4 -1.2 DNA methyltransferase compare
HEPCGN_03690 -1.4 -1.6 Tellurite resistance protein TehB compare
HEPCGN_05830 ydhL -1.4 -0.9 Uncharacterized protein YdhL compare
HEPCGN_19985 emrR -1.4 -1.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
HEPCGN_26180 -1.4 -1.1 Ribosomal-protein-serine N-acetyltransferase compare
HEPCGN_09895 -1.4 -0.7 Transposase compare
HEPCGN_06415 fimZ -1.4 -1.7 fimbria biosynthesis transcriptional regulator FimZ compare
HEPCGN_24580 -1.4 -1.3 host-nuclease inhibitor protein Gam compare
HEPCGN_05950 ydgT -1.3 -1.4 transcription modulator YdgT compare
HEPCGN_03325 yeeT -1.3 -2.3 Uncharacterized protein YeeT compare
HEPCGN_11730 -1.3 -0.9 Conserved phage-related protein compare
HEPCGN_04015 fliR -1.3 -0.7 flagellar type III secretion system protein FliR compare
HEPCGN_24635 ymgF -1.3 -2.0 Inner membrane protein YmgF compare
HEPCGN_09600 fimF -1.3 -2.3 type 1 fimbria minor subunit FimF compare
HEPCGN_01965 -1.3 -1.9 addiction module toxin RelE compare
HEPCGN_22940 ftsK -1.3 -3.7 DNA translocase FtsK compare
HEPCGN_25120 cls -1.3 -1.7 cardiolipin synthase compare
HEPCGN_05390 yniA -1.3 -1.9 putative ketoamine kinase YniA compare
HEPCGN_12385 hslU -1.3 -3.1 HslU--HslV peptidase ATPase subunit compare
HEPCGN_13290 wecA -1.3 -3.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_19505 mazE -1.3 -1.8 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_13250 wzxE -1.3 -4.3 lipid III flippase WzxE compare
HEPCGN_18845 sdhE -1.3 -1.2 FAD assembly factor SdhE compare
HEPCGN_00920 rsfS -1.2 -0.6 ribosome silencing factor compare
HEPCGN_26515 gadB -1.2 -1.2 glutamate decarboxylase compare
HEPCGN_12110 tuf -1.2 -0.5 elongation factor Tu compare
HEPCGN_26335 pptA -1.2 -0.7 tautomerase PptA compare
HEPCGN_04610 cutC -1.2 -1.1 copper homeostasis protein CutC compare
HEPCGN_18620 speB -1.2 -2.5 agmatinase compare
HEPCGN_06015 manA -1.2 -1.1 mannose-6-phosphate isomerase compare
HEPCGN_03695 -1.2 -1.0 Uncharacterized protein YmfE compare
HEPCGN_26545 ydeO -1.2 -1.0 acid stress response transcriptional regulator YdeO compare
HEPCGN_24285 -1.2 -1.8 cell division protein ZapA compare
HEPCGN_03330 yeeS -1.2 -0.8 UPF0758 protein YeeS compare
HEPCGN_14890 hokA -1.2 -1.7 type I toxin-antitoxin system toxin HokA compare
HEPCGN_00190 -1.1 -0.9 DUF2726 domain-containing protein compare
HEPCGN_17025 yrbN -1.1 -1.9 Uncharacterized protein YrbN compare
HEPCGN_05685 ydhY -1.1 -1.5 ferredoxin-like protein compare
HEPCGN_02215 yohC -1.1 -2.0 Inner membrane protein YohC compare
HEPCGN_04835 yebV -1.1 -1.2 Uncharacterized protein YebV compare
HEPCGN_08755 -1.1 -0.8 hypothetical protein compare
HEPCGN_20545 lepA -1.1 -4.1 translation elongation factor 4 compare
HEPCGN_16655 argR -1.1 -3.9 transcriptional regulator ArgR compare
HEPCGN_15625 -1.1 -2.0 Immunity protein 35 compare
HEPCGN_00630 ybdJ -1.1 -1.1 Uncharacterized protein YbdJ compare
HEPCGN_22060 nuoE -1.1 -1.5 NADH-quinone oxidoreductase subunit NuoE compare
HEPCGN_25680 rnb -1.1 -2.3 exoribonuclease II compare
HEPCGN_22055 nuoC -1.1 -4.0 NADH-quinone oxidoreductase subunit C/D compare
HEPCGN_26330 -1.1 -1.9 hypothetical protein compare
HEPCGN_12620 yiiE -1.1 -1.1 Uncharacterized protein YiiE compare
HEPCGN_16925 yhbY -1.1 -1.9 ribosome assembly RNA-binding protein YhbY compare
HEPCGN_03745 Gly_trna -1.1 -1.4 tRNA-Gly(tcc) compare
HEPCGN_01450 tolQ -1.1 -2.0 Tol-Pal system protein TolQ compare
HEPCGN_06435 fimC -1.1 -2.2 type 1 fimbria chaperone FimC compare
HEPCGN_24215 hflD -1.1 -1.6 high frequency lysogenization protein HflD compare
HEPCGN_13550 atpC -1.1 -1.6 F0F1 ATP synthase subunit epsilon compare
HEPCGN_09015 nhaA -1.1 -3.1 Na+/H+ antiporter NhaA compare
HEPCGN_26560 -1.0 -1.2 Protein FimG compare
HEPCGN_01250 -1.0 -1.8 hydrolase compare
HEPCGN_19510 mazF -1.0 -2.4 endoribonuclease MazF compare
HEPCGN_17970 -1.0 -1.5 phosphopantetheine attachment site family protein compare
HEPCGN_25795 pspB -1.0 -0.6 envelope stress response membrane protein PspB compare
HEPCGN_19365 ygdI -1.0 -1.4 Uncharacterized lipoprotein YgdI compare
HEPCGN_03070 cpsG -1.0 -2.5 colanic acid biosynthesis phosphomannomutase CpsG compare
HEPCGN_24120 -1.0 -1.8 DUF4222 domain-containing protein compare
HEPCGN_15750 glpE -1.0 -2.4 thiosulfate sulfurtransferase GlpE compare
HEPCGN_22100 nuoM -1.0 -3.0 NADH-quinone oxidoreductase subunit M compare
HEPCGN_13160 cyaY -1.0 -2.3 iron donor protein CyaY compare
HEPCGN_20655 glyA -1.0 -1.6 serine hydroxymethyltransferase compare
HEPCGN_20125 -1.0 -0.6 hypothetical protein compare
HEPCGN_01065 nagA -1.0 -2.8 N-acetylglucosamine-6-phosphate deacetylase compare
HEPCGN_23140 aspC -1.0 -2.9 aspartate transaminase compare
HEPCGN_10490 miaA -1.0 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HEPCGN_10130 yjgA -1.0 -2.8 ribosome-associated protein compare
HEPCGN_01305 sucA -1.0 -2.3 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_00245 -1.0 -0.8 Phage tail protein compare
HEPCGN_10095 treC -1.0 -3.2 alpha,alpha-phosphotrehalase compare
HEPCGN_22045 nuoA -1.0 -1.9 NADH-quinone oxidoreductase subunit NuoA compare
HEPCGN_23825 flgD -1.0 -1.6 flagellar hook assembly protein FlgD compare
HEPCGN_22125 elaD -1.0 -1.6 ElaD/SseL family deubiquitinase compare
HEPCGN_04750 kdgA -1.0 -0.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HEPCGN_00215 -0.9 -0.8 DNA-binding protein compare
HEPCGN_17495 Ile2_trna -0.9 -0.6 tRNA-Ile2(cat) compare
HEPCGN_26385 -0.9 -2.2 leucine Rich Repeat family protein compare
HEPCGN_14240 -0.9 -0.8 IS3 family transposase compare
HEPCGN_16130 yheO -0.9 -2.6 Uncharacterized protein YheO compare
HEPCGN_13605 pstB -0.9 -0.8 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_24730 dsbB -0.9 -2.1 disulfide bond formation protein DsbB compare
HEPCGN_26240 -0.9 -3.2 polyamine ABC transporter ATP-binding protein compare
HEPCGN_18215 -0.9 -2.9 hypothetical protein compare
HEPCGN_26420 -0.9 -1.1 Killer protein compare
HEPCGN_20765 iscU -0.9 -0.6 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_08825 rsmA -0.9 -2.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
HEPCGN_03005 wzb -0.9 -1.9 low molecular weight protein-tyrosine-phosphatase Wzb compare
HEPCGN_14210 ccmK -0.9 -0.6 BMC domain-containing protein compare
HEPCGN_15520 yhhL -0.9 -1.7 DUF1145 domain-containing protein compare
HEPCGN_21370 ptsI -0.9 -2.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_18830 yqfB -0.9 -1.2 N(4)-acetylcytidine aminohydrolase compare
HEPCGN_03250 yoeI -0.9 -0.9 Uncharacterized protein YoeI compare
HEPCGN_15355 pitA -0.9 -3.6 inorganic phosphate transporter PitA compare
HEPCGN_03750 -0.9 -1.6 holin compare
HEPCGN_07450 cynT -0.9 -1.4 carbonic anhydrase CynT compare
HEPCGN_20860 bamB -0.9 -1.8 outer membrane protein assembly factor BamB compare
HEPCGN_24815 ymgE -0.9 -1.7 UPF0410 protein YmgE compare
HEPCGN_05625 ydiH -0.9 -0.9 Uncharacterized protein YdiH compare
HEPCGN_00445 fII -0.9 -0.6 Head-tail connector protein FII compare
HEPCGN_13510 atpI -0.9 -1.9 F0F1 ATP synthase subunit I compare
HEPCGN_25855 pgmB -0.9 -1.7 beta-phosphoglucomutase compare
HEPCGN_04720 lpxM -0.9 -1.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_01445 ybgC -0.9 -2.3 tol-pal system-associated acyl-CoA thioesterase compare
HEPCGN_22080 nuoI -0.9 -2.0 NADH-quinone oxidoreductase subunit NuoI compare
HEPCGN_07985 gmhB -0.9 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_01600 pgl -0.9 -3.9 6-phosphogluconolactonase compare
HEPCGN_07300 -0.9 -2.2 hypothetical protein compare
HEPCGN_18245 -0.9 -0.8 Transposase compare
HEPCGN_17070 yhbP -0.9 -1.7 YhbP family protein compare
HEPCGN_16805 ptsN -0.9 -2.8 PTS IIA-like nitrogen regulatory protein PtsN compare
HEPCGN_01320 sucD -0.8 -2.9 succinate--CoA ligase subunit alpha compare
HEPCGN_17725 -0.8 -1.7 hypothetical protein compare
HEPCGN_26295 yncE -0.8 -2.4 Uncharacterized protein YncE compare
HEPCGN_12885 fre -0.8 -3.5 NAD(P)H-flavin reductase compare
HEPCGN_05600 -0.8 -1.7 DUF1870 domain-containing protein compare
HEPCGN_20420 yfiS -0.8 -1.6 Protein YfiS compare
HEPCGN_17175 agaR -0.8 -2.4 aga operon transcriptional regulator AgaR compare
HEPCGN_07060 pgpA -0.8 -1.2 phosphatidylglycerophosphatase A compare
HEPCGN_08710 leuD -0.8 -1.1 3-isopropylmalate dehydratase small subunit compare
HEPCGN_08315 yadN -0.8 -3.6 Uncharacterized fimbrial-like protein YadN compare
HEPCGN_03320 -0.8 -0.6 Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage compare
HEPCGN_23230 zapC -0.8 -1.7 cell division protein ZapC compare
HEPCGN_02805 gatA -0.8 -1.0 PTS galactitol transporter subunit IIA compare
HEPCGN_12930 ubiJ -0.8 -1.2 ubiquinone biosynthesis protein UbiJ compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in no phage control experiments

For no phage control No phage across organisms