Experiment set3S637 for Escherichia coli ECOR38

Compare to:

Bas21

200 most important genes:

  gene name fitness t score description  
HEPCGN_12895 rfaH -6.2 -9.1 transcription/translation regulatory transformer protein RfaH compare
HEPCGN_14525 -4.9 -3.4 beta1,3-glucosyltransferase compare
HEPCGN_08815 surA -4.6 -3.2 peptidylprolyl isomerase SurA compare
HEPCGN_02315 -4.6 -1.4 MarR family transcriptional regulator compare
HEPCGN_22095 nuoL -4.5 -6.8 NADH-quinone oxidoreductase subunit L compare
HEPCGN_03930 hprS -4.4 -1.8 two-component system sensor histidine kinase HprS compare
HEPCGN_22075 nuoH -4.4 -2.6 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_12915 tatA -4.3 -1.3 Sec-independent protein translocase subunit TatA compare
HEPCGN_16680 zapG -4.3 -2.6 Z-ring associated protein ZapG compare
HEPCGN_03435 -4.3 -1.3 Uncharacterized deacetylase YaiS compare
HEPCGN_01285 sdhC -4.3 -5.9 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_01100 uof -4.3 -1.3 fur leader peptide compare
HEPCGN_12350 metJ -4.0 -1.7 met regulon transcriptional regulator MetJ compare
HEPCGN_16660 mdh -3.9 -6.3 malate dehydrogenase compare
HEPCGN_16500 fis -3.9 -2.2 DNA-binding transcriptional regulator Fis compare
HEPCGN_14495 rfaJ -3.8 -4.6 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_22105 nuoN -3.7 -6.7 NADH-quinone oxidoreductase subunit NuoN compare
HEPCGN_14490 waaO -3.6 -6.8 lipopolysaccharide 3-alpha-galactosyltransferase compare
HEPCGN_12110 tuf -3.5 -1.1 elongation factor Tu compare
HEPCGN_21365 crr -3.5 -2.8 PTS glucose transporter subunit IIA compare
HEPCGN_14530 -3.5 -2.4 O-antigen ligase domain-containing protein compare
HEPCGN_03185 wzzB -3.5 -4.2 LPS O-antigen chain length determinant protein WzzB compare
HEPCGN_08475 aceF -3.5 -2.0 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_22045 nuoA -3.5 -4.3 NADH-quinone oxidoreductase subunit NuoA compare
HEPCGN_05480 nlpC -3.5 -1.8 putative endopeptidase NlpC compare
HEPCGN_14540 rfaF -3.1 -2.2 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_22065 nuoF -3.1 -7.8 NADH-quinone oxidoreductase subunit NuoF compare
HEPCGN_24875 ychF -3.1 -2.3 redox-regulated ATPase YchF compare
HEPCGN_01300 sdhB -3.1 -6.7 succinate dehydrogenase iron-sulfur subunit SdhB compare
HEPCGN_01275 gltA -3.1 -7.5 citrate synthase compare
HEPCGN_24740 fadR -3.1 -3.7 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_10460 purA -3.1 -7.4 adenylosuccinate synthase compare
HEPCGN_15930 aroK -3.1 -1.3 shikimate kinase AroK compare
HEPCGN_13290 wecA -3.0 -2.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_22090 nuoK -3.0 -1.8 NADH-quinone oxidoreductase subunit NuoK compare
HEPCGN_26960 -2.9 -0.9 Putative DNA-invertase compare
HEPCGN_08835 apaH -2.9 -5.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_25330 -2.9 -1.7 Putative endopeptidase compare
HEPCGN_20250 ratA -2.9 -1.9 type II toxin-antitoxin system toxin RatA compare
HEPCGN_01010 ubiF -2.9 -1.5 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_10565 epmA -2.8 -4.2 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_19900 recA -2.7 -4.0 recombinase RecA compare
HEPCGN_18630 tkt -2.7 -4.5 transketolase compare
HEPCGN_05565 araC -2.7 -1.4 AraC family transcriptional regulator compare
HEPCGN_00405 -2.6 -1.1 hypothetical protein compare
HEPCGN_03670 -2.6 -1.7 Putative bacterial toxin ydaT compare
HEPCGN_01320 sucD -2.5 -4.6 succinate--CoA ligase subunit alpha compare
HEPCGN_21995 pta -2.5 -3.8 phosphate acetyltransferase compare
HEPCGN_19255 rppH -2.5 -1.7 RNA pyrophosphohydrolase compare
HEPCGN_05030 yeaR -2.5 -1.3 Uncharacterized protein YeaR compare
HEPCGN_22055 nuoC -2.5 -6.4 NADH-quinone oxidoreductase subunit C/D compare
HEPCGN_12935 ubiE -2.5 -1.5 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_13320 rep -2.5 -4.1 DNA helicase Rep compare
HEPCGN_01560 galT -2.4 -5.7 galactose-1-phosphate uridylyltransferase compare
HEPCGN_25050 galU -2.4 -4.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
HEPCGN_26495 dosC -2.4 -2.8 diguanylate cyclase DosC compare
HEPCGN_03815 -2.4 -5.2 head-tail connector protein compare
HEPCGN_21875 truA -2.4 -2.3 aspartate-semialdehyde dehydrogenase compare
HEPCGN_01295 sdhA -2.4 -7.3 succinate dehydrogenase flavoprotein subunit compare
HEPCGN_11730 -2.3 -1.3 Conserved phage-related protein compare
HEPCGN_20765 iscU -2.3 -1.0 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_10490 miaA -2.3 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HEPCGN_19505 mazE -2.3 -1.7 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_05830 ydhL -2.3 -1.2 Uncharacterized protein YdhL compare
HEPCGN_22080 nuoI -2.3 -4.5 NADH-quinone oxidoreductase subunit NuoI compare
HEPCGN_01305 sucA -2.3 -5.0 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_06395 -2.3 -1.0 Lambda prophage-derived head-to-tail joining protein W compare
HEPCGN_13250 wzxE -2.3 -6.3 lipid III flippase WzxE compare
HEPCGN_00920 rsfS -2.2 -0.9 ribosome silencing factor compare
HEPCGN_06935 lon_P403L -2.2 -4.6 Lon protease compare
HEPCGN_23880 yceD -2.2 -2.0 23S rRNA accumulation protein YceD compare
HEPCGN_04750 kdgA -2.2 -1.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HEPCGN_16670 degS -2.2 -1.5 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_09895 -2.2 -0.9 Transposase compare
HEPCGN_00885 lipB -2.1 -2.5 lipoyl(octanoyl) transferase LipB compare
HEPCGN_22000 ackA -2.1 -2.5 acetate kinase compare
HEPCGN_06015 manA -2.1 -1.8 mannose-6-phosphate isomerase compare
HEPCGN_22605 yejL -2.1 -1.5 UPF0352 protein YejL compare
HEPCGN_13605 pstB -2.1 -1.4 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_13675 tnaC -2.1 -1.2 tryptophanase leader peptide compare
HEPCGN_13500 mnmG -2.1 -6.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_11135 yjdJ -2.1 -1.5 Uncharacterized protein YjdJ compare
HEPCGN_00825 -2.1 -1.1 citrate lyase acyl carrier protein 1 compare
HEPCGN_20655 glyA -2.1 -2.5 serine hydroxymethyltransferase compare
HEPCGN_25995 ynaL -2.1 -1.8 Protein YnaL compare
HEPCGN_24100 -2.1 -1.5 host cell division inhibitor Icd-like protein compare
HEPCGN_22060 nuoE -2.1 -2.1 NADH-quinone oxidoreductase subunit NuoE compare
HEPCGN_19305 recB -2.0 -4.5 exodeoxyribonuclease V subunit beta compare
HEPCGN_23140 aspC -2.0 -3.2 aspartate transaminase compare
HEPCGN_03300 yoeJ -2.0 -1.9 Protein YoeJ compare
HEPCGN_11605 ubiC -2.0 -1.1 chorismate lyase compare
HEPCGN_06945 clpX -2.0 -5.4 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_25720 sapF -2.0 -1.1 peptide ABC transporter ATP-binding protein SapF compare
HEPCGN_20545 lepA -2.0 -5.5 translation elongation factor 4 compare
HEPCGN_01060 nagC -1.9 -4.6 DNA-binding transcriptional regulator NagC compare
HEPCGN_22070 nuoG -1.9 -5.1 NADH-quinone oxidoreductase subunit NuoG compare
HEPCGN_06175 ynfB -1.9 -0.8 DUF1283 domain-containing protein compare
HEPCGN_15630 yrhA -1.9 -1.5 protein YrhA compare
HEPCGN_11740 -1.9 -3.3 phage major tail tube protein compare
HEPCGN_16345 trkA -1.9 -3.2 Trk system potassium transporter TrkA compare
HEPCGN_22100 nuoM -1.9 -4.4 NADH-quinone oxidoreductase subunit M compare
HEPCGN_12860 trkH -1.8 -6.6 Trk system potassium transporter TrkH compare
HEPCGN_13680 -1.8 -1.9 tRNA modification GTPase MnmE compare
HEPCGN_26580 -1.8 -1.3 fimbria/pilus periplasmic chaperone compare
HEPCGN_21870 usg -1.8 -2.8 aspartate-semialdehyde dehydrogenase compare
HEPCGN_26330 -1.8 -2.4 hypothetical protein compare
HEPCGN_05580 aroD -1.8 -1.9 3-dehydroquinate dehydratase compare
HEPCGN_06475 purE -1.8 -1.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
HEPCGN_20975 purM -1.8 -4.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
HEPCGN_17495 Ile2_trna -1.8 -0.9 tRNA-Ile2(cat) compare
HEPCGN_26935 ydfH -1.8 -1.3 DNA-binding transcriptional regulator YdfH compare
HEPCGN_06950 clpP -1.8 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_20780 hscA -1.8 -2.4 Fe-S protein assembly chaperone HscA compare
HEPCGN_26175 ydcH -1.8 -2.3 Uncharacterized protein YdcH compare
HEPCGN_06205 -1.7 -0.9 DUF5051 domain-containing protein compare
HEPCGN_14480 rfaG -1.7 -5.5 Lipopolysaccharide core biosynthesis protein RfaG compare
HEPCGN_25045 rssB -1.7 -5.1 two-component system response regulator RssB compare
HEPCGN_01065 nagA -1.7 -4.2 N-acetylglucosamine-6-phosphate deacetylase compare
HEPCGN_04315 -1.7 -2.7 capsid assembly protein compare
HEPCGN_11710 -1.7 -1.8 Putative inner membrane protein compare
HEPCGN_26750 -1.7 -1.3 phage tail protein compare
HEPCGN_12475 pfkA -1.6 -3.2 6-phosphofructokinase compare
HEPCGN_19295 recC -1.6 -4.9 exodeoxyribonuclease V subunit gamma compare
HEPCGN_25560 rluB -1.6 -3.3 23S rRNA pseudouridine(2605) synthase RluB compare
HEPCGN_18580 gshB -1.6 -4.4 glutathione synthase compare
HEPCGN_20855 yfgM -1.6 -2.9 ancillary SecYEG translocon subunit YfgM compare
HEPCGN_06640 ybbJ -1.6 -1.2 Inner membrane protein YbbJ compare
HEPCGN_10550 asd -1.6 -0.8 archaetidylserine decarboxylase compare
HEPCGN_21370 ptsI -1.6 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_01290 sdhD -1.5 -4.3 succinate dehydrogenase membrane anchor subunit compare
HEPCGN_04595 flhe -1.5 -1.1 flagellar protein FlhE compare
HEPCGN_15355 pitA -1.5 -5.2 inorganic phosphate transporter PitA compare
HEPCGN_16385 aroE -1.5 -3.8 shikimate dehydrogenase compare
HEPCGN_03755 -1.5 -1.0 DUF1327 domain-containing protein compare
HEPCGN_19965 luxS -1.5 -3.5 S-ribosylhomocysteine lyase compare
HEPCGN_15800 -1.4 -4.3 NfuA family Fe-S biogenesis protein compare
HEPCGN_19665 pcm -1.4 -1.8 protein-L-isoaspartate O-methyltransferase compare
HEPCGN_08480 aceE -1.4 -3.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_20505 srmB -1.4 -5.4 ATP-dependent RNA helicase SrmB compare
HEPCGN_08460 acnB -1.4 -3.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_05940 rsxA -1.4 -1.8 electron transport complex subunit RsxA compare
HEPCGN_08340 -1.4 -2.0 fimbrial-like protein compare
HEPCGN_00215 -1.4 -1.1 DNA-binding protein compare
HEPCGN_17600 -1.4 -3.2 Type I toxin-antitoxin system Ibs family toxin compare
HEPCGN_25175 -1.4 -0.8 DUF1482 domain-containing protein compare
HEPCGN_20905 guaA -1.4 -3.2 glutamine-hydrolyzing GMP synthase compare
HEPCGN_02310 -1.4 -1.3 DUF4752 domain-containing protein compare
HEPCGN_00570 nrfB -1.4 -1.3 phage adsorption protein NrfB compare
HEPCGN_00595 cusF -1.3 -0.9 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF compare
HEPCGN_02305 -1.3 -1.4 hypothetical protein compare
HEPCGN_18855 fldB -1.3 -4.4 flavodoxin FldB compare
HEPCGN_17225 yhaB -1.3 -1.8 Uncharacterized protein YhaB compare
HEPCGN_06115 mlc -1.3 -3.0 DNA-binding transcriptional repressor Mlc compare
HEPCGN_22050 nuoB -1.3 -2.7 NADH-quinone oxidoreductase subunit NuoB compare
HEPCGN_13590 pstS -1.3 -3.9 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_13080 yigG -1.3 -1.2 Inner membrane protein YigG compare
HEPCGN_05265 xthA -1.3 -2.4 exodeoxyribonuclease III compare
HEPCGN_20615 purL -1.3 -7.4 phosphoribosylformylglycinamidine synthase compare
HEPCGN_06330 cspF -1.3 -0.8 Cold shock-like protein CspF compare
HEPCGN_11950 purH -1.3 -4.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HEPCGN_12205 sthA -1.3 -4.3 Si-specific NAD(P)(+) transhydrogenase compare
HEPCGN_23165 ssuB -1.3 -2.1 aliphatic sulfonates ABC transporter ATP-binding protein compare
HEPCGN_11955 purD -1.3 -3.1 Phosphoribosylamine--glycine ligase compare
HEPCGN_24285 -1.3 -1.0 cell division protein ZapA compare
HEPCGN_06080 mdtJ -1.2 -1.0 multidrug/spermidine efflux SMR transporter subunit MdtJ compare
HEPCGN_01280 ybgU -1.2 -2.3 Protein YbgU compare
HEPCGN_16805 ptsN -1.2 -2.4 PTS IIA-like nitrogen regulatory protein PtsN compare
HEPCGN_23820 flgC -1.2 -2.9 flagellar basal body rod protein FlgC compare
HEPCGN_22085 nuoJ -1.2 -1.8 NADH-quinone oxidoreductase subunit J compare
HEPCGN_24435 -1.2 -1.6 Phage-like protein compare
HEPCGN_10830 -1.2 -1.9 amino acid-binding protein compare
HEPCGN_15945 dam -1.2 -2.0 adenine-specific DNA-methyltransferase compare
HEPCGN_18315 -1.2 -1.7 Outer membrane protein compare
HEPCGN_01315 sucC -1.2 -1.9 ADP-forming succinate--CoA ligase subunit beta compare
HEPCGN_10840 tetR(B -1.2 -2.6 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_26515 gadB -1.2 -1.1 glutamate decarboxylase compare
HEPCGN_11380 ytcA -1.2 -1.0 Uncharacterized protein YtcA compare
HEPCGN_03395 -1.2 -1.4 Phosphotriesterase compare
HEPCGN_13595 pstC -1.2 -1.5 phosphate ABC transporter permease PstC compare
HEPCGN_25745 -1.2 -0.8 DUF2543 domain-containing protein compare
HEPCGN_04685 yobI -1.2 -0.6 Uncharacterized protein YobI compare
HEPCGN_25595 -1.1 -2.1 type I DNA topoisomerase compare
HEPCGN_06030 tus -1.1 -2.6 DNA replication terminus site-binding protein compare
HEPCGN_12340 metL -1.1 -5.3 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_21100 purC -1.1 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HEPCGN_17735 qseC -1.1 -3.4 two-component system sensor histidine kinase QseC compare
HEPCGN_04585 flhB -1.1 -1.7 flagellar biosynthesis protein FlhB compare
HEPCGN_02810 gatB -1.1 -0.8 PTS galactitol transporter subunit IIB compare
HEPCGN_03635 -1.1 -0.7 DUF1482 domain-containing protein compare
HEPCGN_03745 Gly_trna -1.1 -1.5 tRNA-Gly(tcc) compare
HEPCGN_10185 chpS -1.1 -0.7 type II toxin-antitoxin system antitoxin ChpS compare
HEPCGN_24505 -1.1 -1.3 Conserved hypothetical phage-related protein compare
HEPCGN_07520 araH -1.1 -4.0 sugar ABC transporter permease compare
HEPCGN_03030 wcaD -1.1 -2.3 putative colanic acid polymerase WcaD compare
HEPCGN_13165 cyaA -1.1 -4.6 class I adenylate cyclase compare
HEPCGN_22885 cspD -1.1 -0.9 cold shock-like protein CspD compare
HEPCGN_09815 fecB -1.1 -1.6 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB compare
HEPCGN_04010 rcsA -1.1 -2.0 transcriptional regulator RcsA compare
HEPCGN_04030 fliO -1.1 -0.6 flagellar type III secretion system protein FliO compare
HEPCGN_12115 Thr_trna -1.1 -0.7 tRNA-Thr(ggt) compare


Specific Phenotypes

For 1 genes in this experiment

For phage Phage in Escherichia coli ECOR38

For phage Phage across organisms