Experiment set3S627 for Escherichia coli ECOR38

Compare to:

CEV1

200 most important genes:

  gene name fitness t score description  
HEPCGN_08815 surA -4.6 -3.2 peptidylprolyl isomerase SurA compare
HEPCGN_06205 -4.4 -1.3 DUF5051 domain-containing protein compare
HEPCGN_02315 -4.4 -1.3 MarR family transcriptional regulator compare
HEPCGN_16680 zapG -4.3 -2.5 Z-ring associated protein ZapG compare
HEPCGN_25120 cls -4.2 -2.7 cardiolipin synthase compare
HEPCGN_03435 -4.1 -1.2 Uncharacterized deacetylase YaiS compare
HEPCGN_01100 uof -4.1 -1.2 fur leader peptide compare
HEPCGN_14530 -3.6 -2.5 O-antigen ligase domain-containing protein compare
HEPCGN_23880 yceD -3.5 -3.4 23S rRNA accumulation protein YceD compare
HEPCGN_18630 tkt -3.4 -3.3 transketolase compare
HEPCGN_08475 aceF -3.4 -1.9 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_12560 frvA -3.4 -1.0 PTS fructose transporter subunit IIA compare
HEPCGN_03670 -3.4 -1.7 Putative bacterial toxin ydaT compare
HEPCGN_24005 bhsA -3.3 -1.3 multiple stress resistance protein BhsA compare
HEPCGN_22185 arnT -3.2 -1.7 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
HEPCGN_05480 nlpC -3.1 -1.5 putative endopeptidase NlpC compare
HEPCGN_15630 yrhA -3.1 -2.0 protein YrhA compare
HEPCGN_10185 chpS -3.0 -1.2 type II toxin-antitoxin system antitoxin ChpS compare
HEPCGN_15205 hdeA -3.0 -0.9 acid-activated periplasmic chaperone HdeA compare
HEPCGN_26580 -3.0 -1.5 fimbria/pilus periplasmic chaperone compare
HEPCGN_22000 ackA -2.9 -2.0 acetate kinase compare
HEPCGN_20250 ratA -2.7 -1.8 type II toxin-antitoxin system toxin RatA compare
HEPCGN_17495 Ile2_trna -2.7 -1.1 tRNA-Ile2(cat) compare
HEPCGN_12115 Thr_trna -2.6 -0.9 tRNA-Thr(ggt) compare
HEPCGN_17635 yqiH -2.6 -2.2 Uncharacterized fimbrial chaperone YqiH compare
HEPCGN_21675 ipuA -2.5 -1.5 tyrosine-type DNA invertase IpuA compare
HEPCGN_14210 ccmK -2.5 -1.0 BMC domain-containing protein compare
HEPCGN_13550 atpC -2.4 -2.4 F0F1 ATP synthase subunit epsilon compare
HEPCGN_12935 ubiE -2.4 -1.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_19255 rppH -2.4 -1.7 RNA pyrophosphohydrolase compare
HEPCGN_23500 rutF -2.4 -2.1 malonic semialdehyde reductase compare
HEPCGN_20770 iscA -2.4 -1.6 iron-sulfur cluster assembly protein IscA compare
HEPCGN_20655 glyA -2.4 -3.1 serine hydroxymethyltransferase compare
HEPCGN_03635 -2.3 -1.0 DUF1482 domain-containing protein compare
HEPCGN_13100 corA -2.3 -3.9 magnesium/cobalt transporter CorA compare
HEPCGN_21370 ptsI -2.3 -4.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_02805 gatA -2.3 -1.9 PTS galactitol transporter subunit IIA compare
HEPCGN_18120 neuA -2.2 -1.8 N-acylneuraminate cytidylyltransferase compare
HEPCGN_08460 acnB -2.2 -4.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_01120 seqA -2.2 -1.5 replication initiation negative regulator SeqA compare
HEPCGN_10565 epmA -2.2 -3.9 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_20765 iscU -2.2 -0.9 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_13500 mnmG -2.2 -6.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_05675 pykF -2.1 -1.2 pyruvate kinase PykF compare
HEPCGN_16670 degS -2.1 -1.5 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_21760 sixA -2.1 -2.2 phosphohistidine phosphatase SixA compare
HEPCGN_26865 lacF -2.1 -1.2 PTS lactose/cellobiose transporter subunit IIA compare
HEPCGN_02305 -2.0 -1.4 hypothetical protein compare
HEPCGN_02725 yehC -1.9 -1.2 putative fimbrial chaperone YehC compare
HEPCGN_00885 lipB -1.9 -2.3 lipoyl(octanoyl) transferase LipB compare
HEPCGN_02010 ybjH -1.9 -0.9 Uncharacterized protein YbjH compare
HEPCGN_25175 -1.8 -0.9 DUF1482 domain-containing protein compare
HEPCGN_24740 fadR -1.8 -3.0 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_02400 -1.8 -1.2 hypothetical protein compare
HEPCGN_22095 nuoL -1.8 -4.7 NADH-quinone oxidoreductase subunit L compare
HEPCGN_06330 cspF -1.8 -1.0 Cold shock-like protein CspF compare
HEPCGN_16970 fMet_trna -1.8 -0.9 tRNA-fMet(cat) compare
HEPCGN_07100 -1.8 -0.7 Putative virulence protein compare
HEPCGN_24920 prmC -1.8 -2.0 peptide chain release factor N(5)-glutamine methyltransferase compare
HEPCGN_16770 arcB -1.8 -1.2 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_20780 hscA -1.7 -2.0 Fe-S protein assembly chaperone HscA compare
HEPCGN_16490 yhdU -1.7 -0.9 Inner membrane protein YhdU compare
HEPCGN_13680 -1.7 -2.6 tRNA modification GTPase MnmE compare
HEPCGN_06950 clpP -1.7 -3.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_00215 -1.7 -1.2 DNA-binding protein compare
HEPCGN_16345 trkA -1.7 -3.9 Trk system potassium transporter TrkA compare
HEPCGN_08480 aceE -1.6 -3.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_05830 ydhL -1.6 -0.9 Uncharacterized protein YdhL compare
HEPCGN_14540 rfaF -1.6 -1.5 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_05060 yeaO -1.5 -0.9 Uncharacterized protein YeaO compare
HEPCGN_10840 tetR(B -1.5 -3.0 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_25795 pspB -1.5 -0.8 envelope stress response membrane protein PspB compare
HEPCGN_16130 yheO -1.5 -3.6 Uncharacterized protein YheO compare
HEPCGN_07140 yajC -1.5 -1.0 preprotein translocase subunit YajC compare
HEPCGN_11285 phnH -1.5 -3.4 phosphonate C-P lyase system protein PhnH compare
HEPCGN_20545 lepA -1.5 -4.8 translation elongation factor 4 compare
HEPCGN_18385 papE -1.5 -1.0 P pilus minor subunit PapE compare
HEPCGN_10435 yjfJ -1.5 -2.1 Uncharacterized protein YjfJ compare
HEPCGN_04030 fliO -1.5 -0.7 flagellar type III secretion system protein FliO compare
HEPCGN_23600 -1.5 -1.9 GGDEF domain-containing protein compare
HEPCGN_21995 pta -1.5 -3.0 phosphate acetyltransferase compare
HEPCGN_04750 kdgA -1.4 -1.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HEPCGN_23195 elfD -1.4 -2.2 putative fimbrial chaperone protein ElfD compare
HEPCGN_01985 gstB -1.4 -1.9 glutathione S-transferase GstB compare
HEPCGN_24520 -1.4 -2.0 lytic murein transglycosylase compare
HEPCGN_00810 citX -1.4 -1.0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
HEPCGN_25595 -1.4 -3.0 type I DNA topoisomerase compare
HEPCGN_11605 ubiC -1.4 -1.0 chorismate lyase compare
HEPCGN_06785 apt -1.4 -1.2 adenine phosphoribosyltransferase compare
HEPCGN_23990 ndh -1.4 -3.3 NADH-quinone dehydrogenase compare
HEPCGN_23140 aspC -1.4 -3.2 aspartate transaminase compare
HEPCGN_24875 ychF -1.4 -1.2 redox-regulated ATPase YchF compare
HEPCGN_24280 dksA -1.4 -3.7 conjugal transfer protein TraR compare
HEPCGN_25605 ymiA -1.4 -1.5 YmiA family putative membrane protein compare
HEPCGN_12475 pfkA -1.4 -2.5 6-phosphofructokinase compare
HEPCGN_18080 gspJ -1.3 -1.8 general secretion pathway protein J compare
HEPCGN_10130 yjgA -1.3 -3.0 ribosome-associated protein compare
HEPCGN_19305 recB -1.3 -3.5 exodeoxyribonuclease V subunit beta compare
HEPCGN_21820 aroC -1.3 -1.2 chorismate synthase compare
HEPCGN_06395 -1.3 -0.6 Lambda prophage-derived head-to-tail joining protein W compare
HEPCGN_19900 recA -1.3 -1.8 recombinase RecA compare
HEPCGN_21870 usg -1.3 -3.2 aspartate-semialdehyde dehydrogenase compare
HEPCGN_12910 tatB -1.3 -0.6 Sec-independent protein translocase protein TatB compare
HEPCGN_17485 nfeR -1.3 -2.8 DNA-binding transcriptional regulator NfeR compare
HEPCGN_01010 ubiF -1.3 -0.8 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_18310 -1.3 -1.3 TetR/AcrR family transcriptional regulator compare
HEPCGN_13320 rep -1.3 -2.4 DNA helicase Rep compare
HEPCGN_08710 leuD -1.3 -1.6 3-isopropylmalate dehydratase small subunit compare
HEPCGN_25680 rnb -1.3 -2.3 exoribonuclease II compare
HEPCGN_04010 rcsA -1.3 -2.1 transcriptional regulator RcsA compare
HEPCGN_16925 yhbY -1.3 -1.9 ribosome assembly RNA-binding protein YhbY compare
HEPCGN_11730 -1.3 -0.9 Conserved phage-related protein compare
HEPCGN_05940 rsxA -1.3 -1.8 electron transport complex subunit RsxA compare
HEPCGN_22930 trxB -1.2 -1.9 thioredoxin-disulfide reductase compare
HEPCGN_10835 arsR -1.2 -1.6 transcriptional regulator compare
HEPCGN_00630 ybdJ -1.2 -1.3 Uncharacterized protein YbdJ compare
HEPCGN_17150 agaF -1.2 -1.8 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA compare
HEPCGN_11085 -1.2 -1.6 toxin compare
HEPCGN_12340 metL -1.2 -6.0 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_20940 yfgG -1.2 -1.4 Uncharacterized protein YfgG compare
HEPCGN_03300 yoeJ -1.2 -1.0 Protein YoeJ compare
HEPCGN_22075 nuoH -1.2 -1.0 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_19955 gshA -1.2 -5.1 glutamate--cysteine ligase compare
HEPCGN_13700 ysdD -1.2 -0.8 Protein YsdD compare
HEPCGN_13160 cyaY -1.1 -2.2 iron donor protein CyaY compare
HEPCGN_15735 -1.1 -3.0 Ybl142 compare
HEPCGN_17675 ygiB -1.1 -3.0 DUF1190 domain-containing protein compare
HEPCGN_04610 cutC -1.1 -0.9 copper homeostasis protein CutC compare
HEPCGN_23165 ssuB -1.1 -1.7 aliphatic sulfonates ABC transporter ATP-binding protein compare
HEPCGN_15800 -1.1 -3.8 NfuA family Fe-S biogenesis protein compare
HEPCGN_00405 -1.1 -0.6 hypothetical protein compare
HEPCGN_24100 -1.1 -0.9 host cell division inhibitor Icd-like protein compare
HEPCGN_03840 -1.1 -1.0 phage tail protein compare
HEPCGN_07710 rpmE2-1 -1.1 -1.1 type B 50S ribosomal protein L31 compare
HEPCGN_07230 aroM -1.1 -3.3 Protein AroM compare
HEPCGN_24475 -1.1 -1.8 peptidase compare
HEPCGN_02985 -1.1 -0.4 transcriptional regulator compare
HEPCGN_22085 nuoJ -1.1 -2.7 NADH-quinone oxidoreductase subunit J compare
HEPCGN_18905 ygfS -1.1 -1.3 Putative electron transport protein YgfS compare
HEPCGN_09825 fecR -1.1 -1.7 fec operon regulator FecR compare
HEPCGN_05395 ydiZ -1.1 -2.6 Uncharacterized protein YdiZ compare
HEPCGN_24515 -1.1 -1.9 Putative lipoprotein compare
HEPCGN_10460 purA -1.1 -3.5 adenylosuccinate synthase compare
HEPCGN_05525 -1.1 -0.7 EbgC protein compare
HEPCGN_23750 bssS -1.1 -1.8 biofilm formation regulator BssS compare
HEPCGN_08745 thiQ -1.1 -2.6 thiamine ABC transporter ATP-binding protein ThiQ compare
HEPCGN_12860 trkH -1.1 -4.0 Trk system potassium transporter TrkH compare
HEPCGN_23640 cgsE -1.0 -1.2 curli production assembly/transport protein CsgE compare
HEPCGN_24790 -1.0 -1.4 hypothetical protein compare
HEPCGN_22105 nuoN -1.0 -3.7 NADH-quinone oxidoreductase subunit NuoN compare
HEPCGN_18300 -1.0 -0.8 IS2 repressor protein compare
HEPCGN_02310 -1.0 -1.2 DUF4752 domain-containing protein compare
HEPCGN_18620 speB -1.0 -2.8 agmatinase compare
HEPCGN_00170 -1.0 -6.8 peptidyl-arginine deiminase compare
HEPCGN_24980 narX -1.0 -1.4 nitrate/nitrite two-component system sensor histidine kinase NarX compare
HEPCGN_08840 -1.0 -1.4 Toxin CcdB compare
HEPCGN_25920 uspE -1.0 -2.5 universal stress protein UspE compare
HEPCGN_04720 lpxM -1.0 -1.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_20505 srmB -1.0 -3.9 ATP-dependent RNA helicase SrmB compare
HEPCGN_24160 -1.0 -1.4 phage head closure protein compare
HEPCGN_06135 dmsD -1.0 -1.0 Tat proofreading chaperone DmsD compare
HEPCGN_25045 rssB -1.0 -3.6 two-component system response regulator RssB compare
HEPCGN_09630 fimB -1.0 -2.2 type 1 fimbria switch DNA invertase FimB compare
HEPCGN_12720 typA -1.0 -4.6 ribosome-dependent GTPase TypA compare
HEPCGN_03320 -1.0 -0.7 Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage compare
HEPCGN_26445 bdm -1.0 -1.3 biofilm-dependent modulation protein compare
HEPCGN_07270 iraP -1.0 -1.7 anti-adapter protein IraP compare
HEPCGN_01300 sdhB -0.9 -3.0 succinate dehydrogenase iron-sulfur subunit SdhB compare
HEPCGN_19665 pcm -0.9 -1.3 protein-L-isoaspartate O-methyltransferase compare
HEPCGN_20375 rluD -0.9 -2.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
HEPCGN_19380 ygdD -0.9 -2.6 DUF423 domain-containing protein compare
HEPCGN_06115 mlc -0.9 -3.3 DNA-binding transcriptional repressor Mlc compare
HEPCGN_23155 pncB -0.9 -3.0 nicotinate phosphoribosyltransferase compare
HEPCGN_13745 yidB -0.9 -2.3 Uncharacterized protein YidB compare
HEPCGN_12620 yiiE -0.9 -0.9 Uncharacterized protein YiiE compare
HEPCGN_25925 fnr -0.9 -2.5 fumarate/nitrate reduction transcriptional regulator Fnr compare
HEPCGN_23470 -0.9 -0.6 YccE family protein compare
HEPCGN_03425 -0.9 -0.5 acetyltransferase compare
HEPCGN_26545 ydeO -0.9 -0.6 acid stress response transcriptional regulator YdeO compare
HEPCGN_03815 -0.9 -2.1 head-tail connector protein compare
HEPCGN_02750 rcnR -0.9 -1.1 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
HEPCGN_17730 ygiZ -0.9 -1.3 Inner membrane protein YgiZ compare
HEPCGN_26585 -0.9 -2.6 hypothetical protein compare
HEPCGN_04210 -0.9 -1.5 Ogr/Delta-like zinc finger compare
HEPCGN_05440 pheM -0.9 -0.4 pheST operon leader peptide PheM compare
HEPCGN_25930 ogt -0.9 -1.2 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HEPCGN_20825 ndk -0.9 -1.5 nucleoside-diphosphate kinase compare
HEPCGN_05080 yeaK -0.9 -2.6 mischarged aminoacyl-tRNA deacylase compare
HEPCGN_23225 pyrD -0.9 -2.9 quinone-dependent dihydroorotate dehydrogenase compare
HEPCGN_05960 add -0.9 -1.7 adenosine deaminase compare
HEPCGN_16660 mdh -0.9 -1.6 malate dehydrogenase compare
HEPCGN_17235 tdcB -0.9 -1.9 bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB compare
HEPCGN_19285 ygdB -0.9 -1.1 DUF2509 domain-containing protein compare
HEPCGN_12440 yfcZ -0.9 -3.7 DUF406 domain-containing protein compare
HEPCGN_16385 aroE -0.9 -2.0 shikimate dehydrogenase compare
HEPCGN_26060 ynbE -0.9 -0.7 YdbH family protein compare
HEPCGN_27390 -0.9 -3.6 transcriptional regulator compare
HEPCGN_04115 fliT -0.9 -0.8 flagella biosynthesis regulatory protein FliT compare
HEPCGN_15510 yhhN -0.9 -2.0 Uncharacterized membrane protein YhhN compare
HEPCGN_25970 smrA -0.9 -1.4 DNA endonuclease SmrA compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms