Experiment set3S625 for Escherichia coli ECOR38

Compare to:

Bas18

200 most important genes:

  gene name fitness t score description  
HEPCGN_08815 surA -5.4 -3.8 peptidylprolyl isomerase SurA compare
HEPCGN_16680 zapG -5.2 -2.2 Z-ring associated protein ZapG compare
HEPCGN_02315 -5.0 -1.1 MarR family transcriptional regulator compare
HEPCGN_03670 -4.1 -1.7 Putative bacterial toxin ydaT compare
HEPCGN_12560 frvA -4.0 -0.8 PTS fructose transporter subunit IIA compare
HEPCGN_15205 hdeA -3.6 -0.8 acid-activated periplasmic chaperone HdeA compare
HEPCGN_25670 yciZ -3.3 -2.0 UPF0509 protein YciZ compare
HEPCGN_12935 ubiE -3.3 -1.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_20780 hscA -3.1 -2.4 Fe-S protein assembly chaperone HscA compare
HEPCGN_21370 ptsI -3.1 -6.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_11605 ubiC -3.0 -1.8 chorismate lyase compare
HEPCGN_01120 seqA -3.0 -1.8 replication initiation negative regulator SeqA compare
HEPCGN_16670 degS -2.8 -1.7 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_21365 crr -2.8 -2.5 PTS glucose transporter subunit IIA compare
HEPCGN_21995 pta -2.8 -4.9 phosphate acetyltransferase compare
HEPCGN_14530 -2.8 -1.9 O-antigen ligase domain-containing protein compare
HEPCGN_20765 iscU -2.7 -0.8 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_24920 prmC -2.7 -2.5 peptide chain release factor N(5)-glutamine methyltransferase compare
HEPCGN_22000 ackA -2.6 -3.2 acetate kinase compare
HEPCGN_19900 recA -2.6 -4.3 recombinase RecA compare
HEPCGN_05675 pykF -2.6 -1.8 pyruvate kinase PykF compare
HEPCGN_17495 Ile2_trna -2.5 -1.1 tRNA-Ile2(cat) compare
HEPCGN_04675 ruvC -2.5 -2.0 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_24875 ychF -2.5 -1.8 redox-regulated ATPase YchF compare
HEPCGN_04595 flhe -2.4 -1.9 flagellar protein FlhE compare
HEPCGN_25595 -2.3 -5.2 type I DNA topoisomerase compare
HEPCGN_08460 acnB -2.3 -5.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_05905 -2.2 -1.0 hypothetical protein compare
HEPCGN_13500 mnmG -2.2 -6.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_01455 tolR -2.2 -2.9 colicin uptake protein TolR compare
HEPCGN_06330 cspF -2.1 -1.0 Cold shock-like protein CspF compare
HEPCGN_08480 aceE -2.0 -5.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_03755 -2.0 -1.1 DUF1327 domain-containing protein compare
HEPCGN_26905 mgtS -2.0 -1.0 protein MgtS compare
HEPCGN_14240 -2.0 -1.3 IS3 family transposase compare
HEPCGN_26060 ynbE -2.0 -2.1 YdbH family protein compare
HEPCGN_01100 uof -1.9 -0.8 fur leader peptide compare
HEPCGN_06785 apt -1.9 -1.4 adenine phosphoribosyltransferase compare
HEPCGN_14525 -1.8 -3.3 beta1,3-glucosyltransferase compare
HEPCGN_26960 -1.8 -0.5 Putative DNA-invertase compare
HEPCGN_19505 mazE -1.8 -1.6 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_00885 lipB -1.7 -2.2 lipoyl(octanoyl) transferase LipB compare
HEPCGN_18630 tkt -1.7 -3.6 transketolase compare
HEPCGN_13680 -1.7 -2.6 tRNA modification GTPase MnmE compare
HEPCGN_20125 -1.7 -0.8 hypothetical protein compare
HEPCGN_00370 -1.7 -1.1 Prophage CP4-57 regulatory protein (AlpA) compare
HEPCGN_13320 rep -1.7 -2.7 DNA helicase Rep compare
HEPCGN_16345 trkA -1.7 -3.7 Trk system potassium transporter TrkA compare
HEPCGN_21875 truA -1.7 -3.0 aspartate-semialdehyde dehydrogenase compare
HEPCGN_01010 ubiF -1.6 -0.9 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_00215 -1.6 -1.2 DNA-binding protein compare
HEPCGN_22075 nuoH -1.6 -1.4 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_18080 gspJ -1.5 -1.9 general secretion pathway protein J compare
HEPCGN_13250 wzxE -1.5 -5.0 lipid III flippase WzxE compare
HEPCGN_00595 cusF -1.5 -0.9 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF compare
HEPCGN_13595 pstC -1.5 -2.6 phosphate ABC transporter permease PstC compare
HEPCGN_27080 -1.5 -1.7 DNA packaging protein from bacteriophage origin compare
HEPCGN_21870 usg -1.5 -3.1 aspartate-semialdehyde dehydrogenase compare
HEPCGN_01465 tolB -1.4 -3.9 Tol-Pal system protein TolB compare
HEPCGN_15945 dam -1.4 -2.1 adenine-specific DNA-methyltransferase compare
HEPCGN_02135 -1.4 -0.7 hypothetical protein compare
HEPCGN_08835 apaH -1.4 -4.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_01445 ybgC -1.3 -3.2 tol-pal system-associated acyl-CoA thioesterase compare
HEPCGN_10880 -1.3 -1.1 Truncated transposase compare
HEPCGN_25055 hns -1.3 -0.8 DNA-binding transcriptional regulator H-NS compare
HEPCGN_15800 -1.3 -4.5 NfuA family Fe-S biogenesis protein compare
HEPCGN_26815 xerD -1.3 -1.3 integrase compare
HEPCGN_18855 fldB -1.3 -3.5 flavodoxin FldB compare
HEPCGN_15355 pitA -1.3 -5.0 inorganic phosphate transporter PitA compare
HEPCGN_03840 -1.3 -1.6 phage tail protein compare
HEPCGN_13605 pstB -1.3 -1.1 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_04760 yebG -1.3 -0.7 DNA damage-inducible protein YebG compare
HEPCGN_05580 aroD -1.2 -2.3 3-dehydroquinate dehydratase compare
HEPCGN_00915 rlmH -1.2 -0.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
HEPCGN_03695 -1.2 -0.7 Uncharacterized protein YmfE compare
HEPCGN_24740 fadR -1.2 -2.1 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_18795 pepP -1.2 -3.7 Xaa-Pro aminopeptidase compare
HEPCGN_17060 yhbS -1.2 -1.1 Uncharacterized N-acetyltransferase YhbS compare
HEPCGN_17175 agaR -1.2 -3.7 aga operon transcriptional regulator AgaR compare
HEPCGN_16835 kdsC -1.2 -1.9 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HEPCGN_22125 elaD -1.2 -1.7 ElaD/SseL family deubiquitinase compare
HEPCGN_03320 -1.2 -0.8 Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage compare
HEPCGN_13290 wecA -1.2 -3.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_20545 lepA -1.2 -5.8 translation elongation factor 4 compare
HEPCGN_23880 yceD -1.2 -1.4 23S rRNA accumulation protein YceD compare
HEPCGN_05130 yeaC -1.2 -1.0 Uncharacterized protein YeaC compare
HEPCGN_18790 ygfB -1.1 -3.1 UPF0149 family protein YgfB compare
HEPCGN_07285 yaiY -1.1 -1.9 Inner membrane protein YaiY compare
HEPCGN_00810 citX -1.1 -0.7 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
HEPCGN_17025 yrbN -1.1 -1.8 Uncharacterized protein YrbN compare
HEPCGN_04740 zwf -1.1 -4.0 glucose-6-phosphate dehydrogenase compare
HEPCGN_20480 -1.1 -2.2 LysR substrate-binding domain-containing protein compare
HEPCGN_25600 cysB -1.1 -1.4 HTH-type transcriptional regulator CysB compare
HEPCGN_12340 metL -1.1 -5.4 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_08665 cra -1.1 -3.7 catabolite repressor/activator compare
HEPCGN_20945 -1.1 -1.6 hypothetical protein compare
HEPCGN_00170 -1.1 -6.6 peptidyl-arginine deiminase compare
HEPCGN_17635 yqiH -1.1 -2.2 Uncharacterized fimbrial chaperone YqiH compare
HEPCGN_04480 yecJ -1.1 -1.2 Uncharacterized protein YecJ compare
HEPCGN_12110 tuf -1.0 -0.5 elongation factor Tu compare
HEPCGN_19040 -1.0 -1.7 YopN/LcrE/InvE/MxiC type III secretion system gatekeeper compare
HEPCGN_23140 aspC -1.0 -2.1 aspartate transaminase compare
HEPCGN_18670 cysA -1.0 -1.4 ABC transporter ATP-binding protein compare
HEPCGN_13550 atpC -1.0 -1.8 F0F1 ATP synthase subunit epsilon compare
HEPCGN_24695 ycgN -1.0 -1.1 YcgN family cysteine cluster protein compare
HEPCGN_10365 ulaD -1.0 -1.5 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
HEPCGN_15630 yrhA -1.0 -1.1 protein YrhA compare
HEPCGN_22730 yeiL -1.0 -1.6 Regulatory protein YeiL compare
HEPCGN_12115 Thr_trna -1.0 -0.8 tRNA-Thr(ggt) compare
HEPCGN_17970 -1.0 -1.6 phosphopantetheine attachment site family protein compare
HEPCGN_11370 -1.0 -1.3 ROK family protein compare
HEPCGN_20505 srmB -1.0 -4.9 ATP-dependent RNA helicase SrmB compare
HEPCGN_24005 bhsA -1.0 -0.8 multiple stress resistance protein BhsA compare
HEPCGN_24325 ea10 -1.0 -1.3 Protein ea10 compare
HEPCGN_00920 rsfS -1.0 -0.5 ribosome silencing factor compare
HEPCGN_05960 add -1.0 -2.0 adenosine deaminase compare
HEPCGN_26385 -1.0 -1.5 leucine Rich Repeat family protein compare
HEPCGN_06205 -1.0 -0.6 DUF5051 domain-containing protein compare
HEPCGN_01450 tolQ -1.0 -1.8 Tol-Pal system protein TolQ compare
HEPCGN_00405 -1.0 -0.6 hypothetical protein compare
HEPCGN_12930 ubiJ -1.0 -1.5 ubiquinone biosynthesis protein UbiJ compare
HEPCGN_20420 yfiS -1.0 -1.0 Protein YfiS compare
HEPCGN_05090 cdgI -1.0 -2.6 putative diguanylate cyclase CdgI compare
HEPCGN_16045 fic -1.0 -2.5 putative adenosine monophosphate-protein transferase Fic compare
HEPCGN_26715 -1.0 -2.9 Phage tail sheath protein FI compare
HEPCGN_00230 -1.0 -0.8 hypothetical protein compare
HEPCGN_02475 -1.0 -1.0 SAR-endolysin compare
HEPCGN_24885 ychH -1.0 -1.8 stress-induced protein YchH compare
HEPCGN_05335 chbA -0.9 -1.8 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
HEPCGN_22930 trxB -0.9 -1.3 thioredoxin-disulfide reductase compare
HEPCGN_10460 purA -0.9 -3.5 adenylosuccinate synthase compare
HEPCGN_07985 gmhB -0.9 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_12720 typA -0.9 -5.8 ribosome-dependent GTPase TypA compare
HEPCGN_02305 -0.9 -1.0 hypothetical protein compare
HEPCGN_05600 -0.9 -1.8 DUF1870 domain-containing protein compare
HEPCGN_18580 gshB -0.9 -3.8 glutathione synthase compare
HEPCGN_22885 cspD -0.9 -0.8 cold shock-like protein CspD compare
HEPCGN_06950 clpP -0.9 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_06945 clpX -0.9 -3.5 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_12860 trkH -0.9 -3.9 Trk system potassium transporter TrkH compare
HEPCGN_23915 fabF -0.9 -2.7 beta-ketoacyl-ACP synthase II compare
HEPCGN_25120 cls -0.9 -1.4 cardiolipin synthase compare
HEPCGN_20250 ratA -0.9 -0.9 type II toxin-antitoxin system toxin RatA compare
HEPCGN_12475 pfkA -0.9 -2.3 6-phosphofructokinase compare
HEPCGN_07510 yahL -0.9 -1.9 Uncharacterized protein YahL compare
HEPCGN_00055 rzpD -0.9 -1.4 prophage endopeptidase RzpD compare
HEPCGN_10565 epmA -0.9 -1.6 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_05825 nemR -0.9 -1.1 DNA-binding transcriptional regulator NemR compare
HEPCGN_18620 speB -0.9 -2.1 agmatinase compare
HEPCGN_14495 rfaJ -0.9 -2.5 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_21585 ypdK -0.9 -1.3 membrane protein YpdK compare
HEPCGN_13620 -0.9 -1.3 hypothetical protein compare
HEPCGN_04295 -0.9 -1.5 DUF2570 domain-containing protein compare
HEPCGN_12375 ftsN -0.9 -2.6 cell division protein FtsN compare
HEPCGN_12385 hslU -0.9 -2.7 HslU--HslV peptidase ATPase subunit compare
HEPCGN_04405 -0.9 -0.4 DUF4754 domain-containing protein compare
HEPCGN_13245 rffT -0.9 -3.9 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
HEPCGN_21205 eutM -0.9 -3.0 ethanolamine utilization microcompartment protein EutM compare
HEPCGN_02375 -0.9 -1.0 hypothetical protein compare
HEPCGN_02740 rcnB -0.9 -2.4 Ni(II)/Co(II) efflux transporter accessory subunit RcnB compare
HEPCGN_19785 hycF -0.9 -1.3 formate hydrogenlyase subunit HycF compare
HEPCGN_04870 htpX -0.9 -3.1 protease HtpX compare
HEPCGN_18830 yqfB -0.9 -1.5 N(4)-acetylcytidine aminohydrolase compare
HEPCGN_25605 ymiA -0.8 -1.1 YmiA family putative membrane protein compare
HEPCGN_05165 ydjF -0.8 -1.5 Uncharacterized HTH-type transcriptional regulator YdjF compare
HEPCGN_15845 ompR_G63V -0.8 -2.1 two-component system response regulator OmpR compare
HEPCGN_24635 ymgF -0.8 -1.9 Inner membrane protein YmgF compare
HEPCGN_18120 neuA -0.8 -1.5 N-acylneuraminate cytidylyltransferase compare
HEPCGN_09795 -0.8 -1.1 KpLE2 phage-like element compare
HEPCGN_21680 -0.8 -0.8 LuxR family transcriptional regulator compare
HEPCGN_01285 sdhC -0.8 -2.8 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_02290 -0.8 -1.6 hypothetical protein compare
HEPCGN_09170 trpR -0.8 -1.7 trp operon repressor compare
HEPCGN_06135 dmsD -0.8 -0.9 Tat proofreading chaperone DmsD compare
HEPCGN_00460 yjdB -0.8 -0.5 phage tail protein compare
HEPCGN_22090 nuoK -0.8 -0.9 NADH-quinone oxidoreductase subunit NuoK compare
HEPCGN_12745 -0.8 -2.0 Uncharacterized protein YshB compare
HEPCGN_08840 -0.8 -1.0 Toxin CcdB compare
HEPCGN_16970 fMet_trna -0.8 -0.5 tRNA-fMet(cat) compare
HEPCGN_15210 hdeB -0.8 -1.4 acid-activated periplasmic chaperone HdeB compare
HEPCGN_20905 guaA -0.8 -2.8 glutamine-hydrolyzing GMP synthase compare
HEPCGN_21925 hisJ -0.8 -2.2 histidine ABC transporter substrate-binding protein HisJ compare
HEPCGN_14485 rfaP -0.8 -2.3 lipopolysaccharide core heptose(I) kinase RfaP compare
HEPCGN_10935 sgaB -0.8 -1.0 PTS mannitol transporter subunit IIB compare
HEPCGN_09085 -0.8 -3.4 transaldolase B compare
HEPCGN_25050 galU -0.8 -2.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
HEPCGN_11730 -0.8 -0.6 Conserved phage-related protein compare
HEPCGN_17150 agaF -0.8 -1.2 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA compare
HEPCGN_10985 -0.8 -0.5 Insertion element IS629 uncharacterized protein compare
HEPCGN_15880 hslR -0.8 -2.5 ribosome-associated heat shock protein Hsp15 compare
HEPCGN_13100 corA -0.8 -1.9 magnesium/cobalt transporter CorA compare
HEPCGN_18130 neuE -0.8 -0.9 polysialic acid biosynthesis protein compare
HEPCGN_13280 wecB -0.8 -3.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
HEPCGN_25180 -0.8 -0.5 Cell division inhibitor compare
HEPCGN_18395 -0.8 -1.7 carbohydrate-binding protein compare
HEPCGN_02725 yehC -0.8 -0.7 putative fimbrial chaperone YehC compare
HEPCGN_18405 -0.8 -1.9 Transposase compare
HEPCGN_08330 fimA -0.8 -2.1 fimbrial protein compare
HEPCGN_07550 yahI -0.8 -2.6 Carbamate kinase-like protein YahI compare
HEPCGN_19235 ygdR -0.8 -1.3 lipoprotein YgdR compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms