Experiment set3S617 for Escherichia coli ECOR38

Compare to:

K5

200 most important genes:

  gene name fitness t score description  
HEPCGN_16680 zapG -5.1 -3.5 Z-ring associated protein ZapG compare
HEPCGN_02315 -5.0 -1.7 MarR family transcriptional regulator compare
HEPCGN_03670 -4.9 -2.4 Putative bacterial toxin ydaT compare
HEPCGN_08815 surA -4.9 -4.7 peptidylprolyl isomerase SurA compare
HEPCGN_24875 ychF -4.6 -3.2 redox-regulated ATPase YchF compare
HEPCGN_04685 yobI -4.4 -1.5 Uncharacterized protein YobI compare
HEPCGN_08475 aceF -4.2 -2.8 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_13320 rep -3.7 -3.6 DNA helicase Rep compare
HEPCGN_21995 pta -3.6 -4.3 phosphate acetyltransferase compare
HEPCGN_15205 hdeA -3.4 -1.2 acid-activated periplasmic chaperone HdeA compare
HEPCGN_12935 ubiE -3.2 -2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_14530 -3.1 -3.6 O-antigen ligase domain-containing protein compare
HEPCGN_16670 degS -2.9 -2.0 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_05675 pykF -2.8 -2.7 pyruvate kinase PykF compare
HEPCGN_24740 fadR -2.8 -4.6 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_19305 recB -2.7 -6.8 exodeoxyribonuclease V subunit beta compare
HEPCGN_01100 uof -2.7 -1.3 fur leader peptide compare
HEPCGN_22075 nuoH -2.7 -2.3 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_01120 seqA -2.6 -2.5 replication initiation negative regulator SeqA compare
HEPCGN_19295 recC -2.6 -7.8 exodeoxyribonuclease V subunit gamma compare
HEPCGN_15945 dam -2.6 -3.1 adenine-specific DNA-methyltransferase compare
HEPCGN_21680 -2.5 -1.9 LuxR family transcriptional regulator compare
HEPCGN_22940 ftsK -2.5 -5.9 DNA translocase FtsK compare
HEPCGN_01455 tolR -2.5 -3.2 colicin uptake protein TolR compare
HEPCGN_08480 aceE -2.5 -5.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_15950 rpe -2.4 -2.4 ribulose-phosphate 3-epimerase compare
HEPCGN_21365 crr -2.4 -1.8 PTS glucose transporter subunit IIA compare
HEPCGN_15930 aroK -2.4 -1.5 shikimate kinase AroK compare
HEPCGN_01460 tolA -2.3 -4.8 cell envelope integrity protein TolA compare
HEPCGN_02305 -2.3 -2.7 hypothetical protein compare
HEPCGN_01010 ubiF -2.3 -1.5 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_20780 hscA -2.3 -3.0 Fe-S protein assembly chaperone HscA compare
HEPCGN_25605 ymiA -2.3 -2.7 YmiA family putative membrane protein compare
HEPCGN_19505 mazE -2.2 -5.4 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_01305 sucA -2.2 -5.0 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_13290 wecA -2.2 -5.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_01450 tolQ -2.1 -5.2 Tol-Pal system protein TolQ compare
HEPCGN_08460 acnB -2.1 -5.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_23880 yceD -2.0 -2.4 23S rRNA accumulation protein YceD compare
HEPCGN_19900 recA -2.0 -3.6 recombinase RecA compare
HEPCGN_24590 -2.0 -1.4 hypothetical protein compare
HEPCGN_10095 treC -1.9 -5.2 alpha,alpha-phosphotrehalase compare
HEPCGN_04675 ruvC -1.9 -2.5 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_08095 rnhB -1.9 -0.9 ribonuclease HII compare
HEPCGN_18860 xerD -1.9 -5.2 site-specific tyrosine recombinase XerD compare
HEPCGN_14540 rfaF -1.8 -1.9 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_20585 shoB -1.8 -1.2 Small toxic protein ShoB compare
HEPCGN_03905 zinT -1.8 -2.1 metal-binding protein ZinT compare
HEPCGN_08835 apaH -1.7 -5.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_13500 mnmG -1.7 -6.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_21875 truA -1.7 -3.5 aspartate-semialdehyde dehydrogenase compare
HEPCGN_07985 gmhB -1.7 -4.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_18310 -1.7 -1.7 TetR/AcrR family transcriptional regulator compare
HEPCGN_17495 Ile2_trna -1.6 -1.3 tRNA-Ile2(cat) compare
HEPCGN_01465 tolB -1.6 -5.9 Tol-Pal system protein TolB compare
HEPCGN_00190 -1.6 -1.1 DUF2726 domain-containing protein compare
HEPCGN_21870 usg -1.6 -3.6 aspartate-semialdehyde dehydrogenase compare
HEPCGN_25050 galU -1.6 -4.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
HEPCGN_20125 -1.6 -1.1 hypothetical protein compare
HEPCGN_24800 ldcA -1.6 -3.1 muramoyltetrapeptide carboxypeptidase compare
HEPCGN_25995 ynaL -1.5 -2.4 Protein YnaL compare
HEPCGN_12340 metL -1.5 -5.8 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_21370 ptsI -1.5 -3.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_01445 ybgC -1.5 -3.0 tol-pal system-associated acyl-CoA thioesterase compare
HEPCGN_03695 -1.5 -1.6 Uncharacterized protein YmfE compare
HEPCGN_21820 aroC -1.5 -1.5 chorismate synthase compare
HEPCGN_11730 -1.4 -1.5 Conserved phage-related protein compare
HEPCGN_22125 elaD -1.4 -2.1 ElaD/SseL family deubiquitinase compare
HEPCGN_00885 lipB -1.4 -2.2 lipoyl(octanoyl) transferase LipB compare
HEPCGN_05860 slyA -1.4 -1.6 transcriptional regulator SlyA compare
HEPCGN_16770 arcB -1.4 -2.8 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_18630 tkt -1.4 -3.4 transketolase compare
HEPCGN_25795 pspB -1.4 -1.0 envelope stress response membrane protein PspB compare
HEPCGN_06330 cspF -1.3 -1.0 Cold shock-like protein CspF compare
HEPCGN_13680 -1.3 -2.9 tRNA modification GTPase MnmE compare
HEPCGN_12395 rraA -1.3 -1.3 ribonuclease E activity regulator RraA compare
HEPCGN_25595 -1.3 -3.4 type I DNA topoisomerase compare
HEPCGN_22000 ackA -1.3 -2.0 acetate kinase compare
HEPCGN_26545 ydeO -1.3 -0.9 acid stress response transcriptional regulator YdeO compare
HEPCGN_18300 -1.2 -0.8 IS2 repressor protein compare
HEPCGN_00215 -1.2 -1.3 DNA-binding protein compare
HEPCGN_09500 -1.2 -1.4 Putative Se/S carrier protein-like compare
HEPCGN_21760 sixA -1.2 -1.3 phosphohistidine phosphatase SixA compare
HEPCGN_16920 greA -1.2 -0.9 transcription elongation factor GreA compare
HEPCGN_02900 -1.2 -0.8 Type I toxin-antitoxin system Ibs family toxin compare
HEPCGN_03755 -1.2 -1.2 DUF1327 domain-containing protein compare
HEPCGN_05365 ydjO -1.2 -1.3 Uncharacterized protein YdjO compare
HEPCGN_07140 yajC -1.2 -1.2 preprotein translocase subunit YajC compare
HEPCGN_14495 rfaJ -1.1 -2.8 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_13250 wzxE -1.1 -3.8 lipid III flippase WzxE compare
HEPCGN_05625 ydiH -1.1 -1.4 Uncharacterized protein YdiH compare
HEPCGN_20505 srmB -1.1 -4.9 ATP-dependent RNA helicase SrmB compare
HEPCGN_06950 clpP -1.1 -2.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_14490 waaO -1.1 -2.9 lipopolysaccharide 3-alpha-galactosyltransferase compare
HEPCGN_19040 -1.1 -1.6 YopN/LcrE/InvE/MxiC type III secretion system gatekeeper compare
HEPCGN_14485 rfaP -1.1 -3.2 lipopolysaccharide core heptose(I) kinase RfaP compare
HEPCGN_12115 Thr_trna -1.1 -1.1 tRNA-Thr(ggt) compare
HEPCGN_20765 iscU -1.1 -0.9 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_00825 -1.1 -1.0 citrate lyase acyl carrier protein 1 compare
HEPCGN_19255 rppH -1.1 -1.4 RNA pyrophosphohydrolase compare
HEPCGN_00405 -1.1 -0.7 hypothetical protein compare
HEPCGN_11605 ubiC -1.0 -1.4 chorismate lyase compare
HEPCGN_15355 pitA -1.0 -4.7 inorganic phosphate transporter PitA compare
HEPCGN_01470 pal -1.0 -2.1 peptidoglycan-associated lipoprotein Pal compare
HEPCGN_16875 ibaG -1.0 -1.5 BolA family iron metabolism protein IbaG compare
HEPCGN_26330 -1.0 -2.4 hypothetical protein compare
HEPCGN_04695 ruvB -1.0 -1.1 Holliday junction branch migration DNA helicase RuvB compare
HEPCGN_23860 rne -1.0 -2.8 ribonuclease E compare
HEPCGN_26335 pptA -1.0 -0.9 tautomerase PptA compare
HEPCGN_12790 -1.0 -0.6 hypothetical protein compare
HEPCGN_24005 bhsA -1.0 -1.0 multiple stress resistance protein BhsA compare
HEPCGN_24505 -1.0 -1.3 Conserved hypothetical phage-related protein compare
HEPCGN_19290 ppdC -1.0 -1.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
HEPCGN_03320 -1.0 -1.0 Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage compare
HEPCGN_06205 -1.0 -0.8 DUF5051 domain-containing protein compare
HEPCGN_11980 hupA -1.0 -1.5 DNA-binding protein HU-alpha compare
HEPCGN_16345 trkA -0.9 -2.5 Trk system potassium transporter TrkA compare
HEPCGN_16130 yheO -0.9 -2.7 Uncharacterized protein YheO compare
HEPCGN_04740 zwf -0.9 -3.3 glucose-6-phosphate dehydrogenase compare
HEPCGN_14320 frwB -0.9 -1.2 PTS fructose transporter subunit IIB compare
HEPCGN_12915 tatA -0.9 -0.8 Sec-independent protein translocase subunit TatA compare
HEPCGN_16655 argR -0.9 -3.7 transcriptional regulator ArgR compare
HEPCGN_24965 chaC -0.9 -3.5 glutathione-specific gamma-glutamylcyclotransferase compare
HEPCGN_13160 cyaY -0.9 -2.9 iron donor protein CyaY compare
HEPCGN_20860 bamB -0.9 -2.8 outer membrane protein assembly factor BamB compare
HEPCGN_20545 lepA -0.9 -2.8 translation elongation factor 4 compare
HEPCGN_03650 ydfC -0.9 -2.1 Uncharacterized protein YdfC compare
HEPCGN_08825 rsmA -0.9 -2.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
HEPCGN_08205 degP -0.9 -4.8 serine endoprotease DegP compare
HEPCGN_25325 -0.9 -1.2 SAR-endolysin compare
HEPCGN_26870 -0.9 -1.3 PTS cellobiose transporter subunit IIC compare
HEPCGN_05865 slyB -0.9 -1.1 outer membrane lipoprotein SlyB compare
HEPCGN_26305 yncG -0.9 -1.8 Uncharacterized GST-like protein YncG compare
HEPCGN_26180 -0.9 -1.5 Ribosomal-protein-serine N-acetyltransferase compare
HEPCGN_17150 agaF -0.9 -1.5 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA compare
HEPCGN_13600 pstA -0.9 -1.7 phosphate ABC transporter permease PstA compare
HEPCGN_22885 cspD -0.9 -1.1 cold shock-like protein CspD compare
HEPCGN_19045 escV -0.9 -2.1 EscV/YscV/HrcV family type III secretion system export apparatus protein compare
HEPCGN_12720 typA -0.8 -5.1 ribosome-dependent GTPase TypA compare
HEPCGN_17055 ubiT -0.8 -3.5 Ubiquinone biosynthesis accessory factor UbiT compare
HEPCGN_17030 deaD -0.8 -2.7 ATP-dependent RNA helicase DeaD compare
HEPCGN_19955 gshA -0.8 -4.3 glutamate--cysteine ligase compare
HEPCGN_21275 amiA -0.8 -3.3 N-acetylmuramoyl-L-alanine amidase AmiA compare
HEPCGN_08550 yacG -0.8 -0.6 DNA gyrase inhibitor YacG compare
HEPCGN_27300 -0.8 -3.2 Transposase insH for insertion sequence element IS5Y compare
HEPCGN_09005 -0.8 -1.6 fimbrial family protein compare
HEPCGN_27265 traI -0.8 -1.0 conjugative transfer relaxase/helicase TraI compare
HEPCGN_19310 recD -0.8 -2.4 exodeoxyribonuclease V subunit alpha compare
HEPCGN_17535 ttdB -0.8 -1.8 L(+)-tartrate dehydratase subunit beta compare
HEPCGN_03415 -0.8 -0.8 DDE-Tnp-IS66-C domain-containing protein compare
HEPCGN_22060 nuoE -0.8 -1.4 NADH-quinone oxidoreductase subunit NuoE compare
HEPCGN_04030 fliO -0.8 -0.7 flagellar type III secretion system protein FliO compare
HEPCGN_19665 pcm -0.8 -2.1 protein-L-isoaspartate O-methyltransferase compare
HEPCGN_09720 -0.8 -1.7 Prophage P4 integrase compare
HEPCGN_24345 -0.8 -1.3 Protein TonB compare
HEPCGN_01965 -0.8 -1.9 addiction module toxin RelE compare
HEPCGN_26550 safA -0.8 -1.0 two-component system connector SafA compare
HEPCGN_00055 rzpD -0.8 -1.4 prophage endopeptidase RzpD compare
HEPCGN_15625 -0.8 -1.5 Immunity protein 35 compare
HEPCGN_10565 epmA -0.8 -1.7 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_22015 hxpA -0.8 -2.5 hexitol phosphatase HxpA compare
HEPCGN_00230 -0.8 -1.0 hypothetical protein compare
HEPCGN_16325 yhdN -0.7 -1.0 Uncharacterized protein YhdN compare
HEPCGN_12475 pfkA -0.7 -2.3 6-phosphofructokinase compare
HEPCGN_10985 -0.7 -0.7 Insertion element IS629 uncharacterized protein compare
HEPCGN_18620 speB -0.7 -2.9 agmatinase compare
HEPCGN_25560 rluB -0.7 -2.4 23S rRNA pseudouridine(2605) synthase RluB compare
HEPCGN_22930 trxB -0.7 -1.3 thioredoxin-disulfide reductase compare
HEPCGN_07100 -0.7 -0.6 Putative virulence protein compare
HEPCGN_15630 yrhA -0.7 -1.5 protein YrhA compare
HEPCGN_03765 -0.7 -1.3 lysis protein compare
HEPCGN_07085 nrdR -0.7 -1.9 transcriptional regulator NrdR compare
HEPCGN_18750 argP -0.7 -2.5 DNA-binding transcriptional regulator ArgP compare
HEPCGN_14480 rfaG -0.7 -3.2 Lipopolysaccharide core biosynthesis protein RfaG compare
HEPCGN_05390 yniA -0.7 -1.5 putative ketoamine kinase YniA compare
HEPCGN_00170 -0.7 -3.5 peptidyl-arginine deiminase compare
HEPCGN_26515 gadB -0.7 -1.2 glutamate decarboxylase compare
HEPCGN_26385 -0.7 -1.6 leucine Rich Repeat family protein compare
HEPCGN_17735 qseC -0.7 -3.2 two-component system sensor histidine kinase QseC compare
HEPCGN_18385 papE -0.7 -0.7 P pilus minor subunit PapE compare
HEPCGN_05685 ydhY -0.7 -1.8 ferredoxin-like protein compare
HEPCGN_14525 -0.7 -1.4 beta1,3-glucosyltransferase compare
HEPCGN_24960 chaB -0.7 -2.1 putative cation transport regulator ChaB compare
HEPCGN_08665 cra -0.7 -2.5 catabolite repressor/activator compare
HEPCGN_24685 ycgL -0.7 -1.6 Protein YcgL compare
HEPCGN_20855 yfgM -0.7 -1.1 ancillary SecYEG translocon subunit YfgM compare
HEPCGN_12350 metJ -0.7 -0.9 met regulon transcriptional regulator MetJ compare
HEPCGN_11085 -0.7 -1.4 toxin compare
HEPCGN_04405 -0.7 -0.5 DUF4754 domain-containing protein compare
HEPCGN_24990 -0.7 -2.6 hypothetical protein compare
HEPCGN_02295 -0.7 -1.6 Ead/Ea22-like protein compare
HEPCGN_25600 cysB -0.7 -1.2 HTH-type transcriptional regulator CysB compare
HEPCGN_10840 tetR(B -0.7 -2.2 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_15270 -0.7 -1.5 hypothetical protein compare
HEPCGN_05565 araC -0.7 -0.9 AraC family transcriptional regulator compare
HEPCGN_25045 rssB -0.7 -3.9 two-component system response regulator RssB compare
HEPCGN_04585 flhB -0.7 -2.3 flagellar biosynthesis protein FlhB compare
HEPCGN_15935 aroB -0.7 -2.1 3-dehydroquinate synthase compare
HEPCGN_13595 pstC -0.7 -1.5 phosphate ABC transporter permease PstC compare
HEPCGN_14045 -0.7 -1.7 restriction endonuclease compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms