Experiment set3S608 for Escherichia coli ECOR38

Compare to:

TP2

200 most important genes:

  gene name fitness t score description  
HEPCGN_14495 rfaJ -6.5 -6.4 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_08815 surA -5.4 -3.8 peptidylprolyl isomerase SurA compare
HEPCGN_16680 zapG -5.2 -3.2 Z-ring associated protein ZapG compare
HEPCGN_14525 -5.0 -4.9 beta1,3-glucosyltransferase compare
HEPCGN_12895 rfaH -4.6 -6.5 transcription/translation regulatory transformer protein RfaH compare
HEPCGN_14530 -4.3 -3.0 O-antigen ligase domain-containing protein compare
HEPCGN_24740 fadR -4.3 -3.0 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_08475 aceF -4.3 -2.5 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_04405 -4.2 -1.3 DUF4754 domain-containing protein compare
HEPCGN_03670 -4.2 -2.3 Putative bacterial toxin ydaT compare
HEPCGN_13320 rep -4.2 -2.9 DNA helicase Rep compare
HEPCGN_19295 recC -4.0 -6.1 exodeoxyribonuclease V subunit gamma compare
HEPCGN_14540 rfaF -3.9 -2.7 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_19305 recB -3.8 -5.2 exodeoxyribonuclease V subunit beta compare
HEPCGN_12560 frvA -3.8 -1.2 PTS fructose transporter subunit IIA compare
HEPCGN_13290 wecA -3.8 -2.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_14480 rfaG -3.7 -11.3 Lipopolysaccharide core biosynthesis protein RfaG compare
HEPCGN_15930 aroK -3.6 -1.6 shikimate kinase AroK compare
HEPCGN_01010 ubiF -3.5 -1.9 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_14490 waaO -3.3 -4.2 lipopolysaccharide 3-alpha-galactosyltransferase compare
HEPCGN_12935 ubiE -3.2 -2.0 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_25050 galU -3.2 -8.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
HEPCGN_01305 sucA -3.1 -6.8 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_22940 ftsK -3.0 -5.7 DNA translocase FtsK compare
HEPCGN_16670 degS -2.9 -2.0 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_23880 yceD -2.8 -4.1 23S rRNA accumulation protein YceD compare
HEPCGN_01120 seqA -2.7 -2.6 replication initiation negative regulator SeqA compare
HEPCGN_24800 ldcA -2.6 -3.1 muramoyltetrapeptide carboxypeptidase compare
HEPCGN_00885 lipB -2.6 -3.3 lipoyl(octanoyl) transferase LipB compare
HEPCGN_21370 ptsI -2.5 -6.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_01560 galT -2.5 -7.6 galactose-1-phosphate uridylyltransferase compare
HEPCGN_13680 -2.5 -4.1 tRNA modification GTPase MnmE compare
HEPCGN_00190 -2.4 -1.1 DUF2726 domain-containing protein compare
HEPCGN_22075 nuoH -2.4 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_22930 trxB -2.3 -4.0 thioredoxin-disulfide reductase compare
HEPCGN_04675 ruvC -2.3 -1.5 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_19505 mazE -2.2 -3.3 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_13605 pstB -2.2 -1.8 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_17495 Ile2_trna -2.2 -1.3 tRNA-Ile2(cat) compare
HEPCGN_03895 -2.1 -1.3 hypothetical protein compare
HEPCGN_20780 hscA -2.1 -2.8 Fe-S protein assembly chaperone HscA compare
HEPCGN_13125 xerC -2.1 -4.5 tyrosine recombinase XerC compare
HEPCGN_14485 rfaP -2.1 -5.7 lipopolysaccharide core heptose(I) kinase RfaP compare
HEPCGN_21995 pta -2.0 -4.8 phosphate acetyltransferase compare
HEPCGN_21870 usg -2.0 -4.6 aspartate-semialdehyde dehydrogenase compare
HEPCGN_20525 rseA -1.9 -3.8 anti-sigma-E factor RseA compare
HEPCGN_20770 iscA -1.9 -2.2 iron-sulfur cluster assembly protein IscA compare
HEPCGN_08460 acnB -1.9 -5.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_13500 mnmG -1.9 -7.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_04695 ruvB -1.9 -2.7 Holliday junction branch migration DNA helicase RuvB compare
HEPCGN_20655 glyA -1.9 -3.0 serine hydroxymethyltransferase compare
HEPCGN_16500 fis -1.9 -1.4 DNA-binding transcriptional regulator Fis compare
HEPCGN_15945 dam -1.9 -3.1 adenine-specific DNA-methyltransferase compare
HEPCGN_02315 -1.9 -1.1 MarR family transcriptional regulator compare
HEPCGN_08480 aceE -1.8 -5.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_24695 ycgN -1.8 -2.0 YcgN family cysteine cluster protein compare
HEPCGN_20765 iscU -1.7 -1.1 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_18630 tkt -1.7 -3.3 transketolase compare
HEPCGN_25595 -1.7 -3.8 type I DNA topoisomerase compare
HEPCGN_00215 -1.7 -1.9 DNA-binding protein compare
HEPCGN_13250 wzxE -1.7 -4.9 lipid III flippase WzxE compare
HEPCGN_15205 hdeA -1.6 -0.7 acid-activated periplasmic chaperone HdeA compare
HEPCGN_03755 -1.6 -1.3 DUF1327 domain-containing protein compare
HEPCGN_19290 ppdC -1.6 -1.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
HEPCGN_22000 ackA -1.6 -2.2 acetate kinase compare
HEPCGN_13100 corA -1.6 -3.9 magnesium/cobalt transporter CorA compare
HEPCGN_08835 apaH -1.5 -4.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_21875 truA -1.5 -3.3 aspartate-semialdehyde dehydrogenase compare
HEPCGN_24275 -1.5 -1.8 hypothetical protein compare
HEPCGN_20250 ratA -1.5 -1.3 type II toxin-antitoxin system toxin RatA compare
HEPCGN_01465 tolB -1.5 -4.0 Tol-Pal system protein TolB compare
HEPCGN_12110 tuf -1.4 -0.8 elongation factor Tu compare
HEPCGN_20505 srmB -1.4 -6.3 ATP-dependent RNA helicase SrmB compare
HEPCGN_14520 rfaJ -1.4 -1.7 UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase compare
HEPCGN_01450 tolQ -1.4 -3.1 Tol-Pal system protein TolQ compare
HEPCGN_18315 -1.4 -1.9 Outer membrane protein compare
HEPCGN_11730 -1.4 -1.1 Conserved phage-related protein compare
HEPCGN_12340 metL -1.3 -5.5 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_20125 -1.3 -0.9 hypothetical protein compare
HEPCGN_15535 ftsE -1.3 -4.0 cell division ATP-binding protein FtsE compare
HEPCGN_24875 ychF -1.3 -1.6 redox-regulated ATPase YchF compare
HEPCGN_26845 marA -1.3 -2.6 MDR efflux pump AcrAB transcriptional activator MarA compare
HEPCGN_06205 -1.3 -0.9 DUF5051 domain-containing protein compare
HEPCGN_16490 yhdU -1.3 -1.0 Inner membrane protein YhdU compare
HEPCGN_18860 xerD -1.2 -2.9 site-specific tyrosine recombinase XerD compare
HEPCGN_27220 -1.2 -2.7 CopG family transcriptional regulator compare
HEPCGN_20585 shoB -1.2 -0.9 Small toxic protein ShoB compare
HEPCGN_19900 recA -1.2 -1.8 recombinase RecA compare
HEPCGN_21365 crr -1.2 -1.4 PTS glucose transporter subunit IIA compare
HEPCGN_06950 clpP -1.2 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_12350 metJ -1.2 -1.1 met regulon transcriptional regulator MetJ compare
HEPCGN_21780 -1.2 -1.4 Fimbrial domain-containing protein compare
HEPCGN_03435 -1.2 -0.8 Uncharacterized deacetylase YaiS compare
HEPCGN_05625 ydiH -1.2 -1.7 Uncharacterized protein YdiH compare
HEPCGN_01455 tolR -1.2 -1.7 colicin uptake protein TolR compare
HEPCGN_08295 dksA -1.2 -3.9 RNA polymerase-binding protein DksA compare
HEPCGN_07450 cynT -1.2 -2.7 carbonic anhydrase CynT compare
HEPCGN_10460 purA -1.2 -4.7 adenylosuccinate synthase compare
HEPCGN_00205 -1.2 -2.5 hypothetical protein compare
HEPCGN_18845 sdhE -1.1 -1.5 FAD assembly factor SdhE compare
HEPCGN_27165 -1.1 -0.9 hypothetical protein compare
HEPCGN_17610 ibsD -1.1 -1.5 Small toxic protein IbsD compare
HEPCGN_11635 -1.1 -1.3 sugar ABC transporter compare
HEPCGN_25600 cysB -1.1 -1.6 HTH-type transcriptional regulator CysB compare
HEPCGN_25055 hns -1.1 -1.1 DNA-binding transcriptional regulator H-NS compare
HEPCGN_01460 tolA -1.1 -3.1 cell envelope integrity protein TolA compare
HEPCGN_21475 -1.1 -1.1 RNA-guided endonuclease TnpB family protein compare
HEPCGN_27090 -1.1 -1.7 head decoration protein compare
HEPCGN_03310 yeeW -1.0 -1.4 Protein YeeW compare
HEPCGN_02310 -1.0 -1.5 DUF4752 domain-containing protein compare
HEPCGN_00350 -1.0 -1.3 hypothetical protein compare
HEPCGN_03265 yeeD -1.0 -1.5 Putative sulfur carrier protein YeeD compare
HEPCGN_06785 apt -1.0 -1.8 adenine phosphoribosyltransferase compare
HEPCGN_16345 trkA -1.0 -2.9 Trk system potassium transporter TrkA compare
HEPCGN_18750 argP -1.0 -2.8 DNA-binding transcriptional regulator ArgP compare
HEPCGN_05580 aroD -1.0 -2.1 3-dehydroquinate dehydratase compare
HEPCGN_16920 greA -1.0 -0.7 transcription elongation factor GreA compare
HEPCGN_26870 -1.0 -1.8 PTS cellobiose transporter subunit IIC compare
HEPCGN_07260 psiF -1.0 -3.0 phosphate starvation-inducible protein PsiF compare
HEPCGN_04685 yobI -1.0 -0.7 Uncharacterized protein YobI compare
HEPCGN_02420 -1.0 -2.6 Site-specific DNA-methyltransferase compare
HEPCGN_20860 bamB -1.0 -3.3 outer membrane protein assembly factor BamB compare
HEPCGN_05675 pykF -1.0 -1.2 pyruvate kinase PykF compare
HEPCGN_19255 rppH -1.0 -1.3 RNA pyrophosphohydrolase compare
HEPCGN_25320 -1.0 -1.1 Ybl58 compare
HEPCGN_16925 yhbY -1.0 -1.8 ribosome assembly RNA-binding protein YhbY compare
HEPCGN_04480 yecJ -1.0 -1.2 Uncharacterized protein YecJ compare
HEPCGN_04865 prc -1.0 -4.7 carboxy terminal-processing peptidase compare
HEPCGN_04310 -0.9 -0.8 phage tail protein compare
HEPCGN_05015 dmlA -0.9 -2.2 multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase compare
HEPCGN_26060 ynbE -0.9 -1.3 YdbH family protein compare
HEPCGN_01100 uof -0.9 -0.7 fur leader peptide compare
HEPCGN_10115 relB -0.9 -1.9 type II toxin-antitoxin system RelB/DinJ family antitoxin compare
HEPCGN_00170 -0.9 -3.7 peptidyl-arginine deiminase compare
HEPCGN_04965 yoaB -0.9 -1.9 RutC family protein YoaB compare
HEPCGN_04740 zwf -0.9 -3.9 glucose-6-phosphate dehydrogenase compare
HEPCGN_10565 epmA -0.9 -2.3 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_04610 cutC -0.9 -1.0 copper homeostasis protein CutC compare
HEPCGN_04720 lpxM -0.9 -1.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_17030 deaD -0.9 -2.7 ATP-dependent RNA helicase DeaD compare
HEPCGN_19310 recD -0.9 -3.1 exodeoxyribonuclease V subunit alpha compare
HEPCGN_25680 rnb -0.9 -2.8 exoribonuclease II compare
HEPCGN_25930 ogt -0.9 -1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HEPCGN_03395 -0.9 -1.5 Phosphotriesterase compare
HEPCGN_03705 -0.9 -0.6 protein hokC compare
HEPCGN_09900 -0.9 -2.1 YjhD compare
HEPCGN_17290 yhaI -0.9 -1.4 Inner membrane protein YhaI compare
HEPCGN_04010 rcsA -0.9 -1.7 transcriptional regulator RcsA compare
HEPCGN_01410 glmS -0.8 -2.4 methylaspartate mutase subunit S compare
HEPCGN_26385 -0.8 -1.8 leucine Rich Repeat family protein compare
HEPCGN_13590 pstS -0.8 -3.3 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_25855 pgmB -0.8 -2.0 beta-phosphoglucomutase compare
HEPCGN_25505 yciF -0.8 -1.0 Protein YciF compare
HEPCGN_16770 arcB -0.8 -1.8 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_10095 treC -0.8 -2.5 alpha,alpha-phosphotrehalase compare
HEPCGN_12200 fabR -0.8 -3.3 HTH-type transcriptional repressor FabR compare
HEPCGN_05855 ydhI -0.8 -1.0 Uncharacterized protein YdhI compare
HEPCGN_08710 leuD -0.8 -1.5 3-isopropylmalate dehydratase small subunit compare
HEPCGN_04080 fliE -0.8 -2.2 flagellar hook-basal body complex protein FliE compare
HEPCGN_12620 yiiE -0.8 -1.1 Uncharacterized protein YiiE compare
HEPCGN_02620 -0.8 -1.3 Ybl63 compare
HEPCGN_02975 dcd -0.8 -1.0 dCTP deaminase compare
HEPCGN_19360 csdA -0.8 -3.0 cysteine desulfurase CsdA compare
HEPCGN_03765 -0.8 -1.3 lysis protein compare
HEPCGN_01600 pgl -0.8 -4.4 6-phosphogluconolactonase compare
HEPCGN_20545 lepA -0.8 -3.3 translation elongation factor 4 compare
HEPCGN_22185 arnT -0.8 -0.9 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
HEPCGN_23670 -0.8 -0.7 Uncharacterized protein YmdA compare
HEPCGN_25210 -0.8 -2.6 Cro/Cl family transcriptional regulator compare
HEPCGN_06395 -0.8 -0.6 Lambda prophage-derived head-to-tail joining protein W compare
HEPCGN_10840 tetR(B -0.8 -1.7 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_13620 -0.8 -1.7 hypothetical protein compare
HEPCGN_18855 fldB -0.8 -2.6 flavodoxin FldB compare
HEPCGN_08825 rsmA -0.8 -2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
HEPCGN_25175 -0.8 -0.7 DUF1482 domain-containing protein compare
HEPCGN_17660 zupT -0.8 -2.1 zinc transporter ZupT compare
HEPCGN_13080 yigG -0.8 -1.0 Inner membrane protein YigG compare
HEPCGN_03185 wzzB -0.8 -1.6 LPS O-antigen chain length determinant protein WzzB compare
HEPCGN_13595 pstC -0.8 -1.1 phosphate ABC transporter permease PstC compare
HEPCGN_17535 ttdB -0.8 -1.2 L(+)-tartrate dehydratase subunit beta compare
HEPCGN_12860 trkH -0.8 -3.1 Trk system potassium transporter TrkH compare
HEPCGN_15355 pitA -0.8 -2.7 inorganic phosphate transporter PitA compare
HEPCGN_00355 -0.8 -1.4 head decoration protein compare
HEPCGN_23855 -0.7 -1.1 CopG family transcriptional regulator compare
HEPCGN_16655 argR -0.7 -3.5 transcriptional regulator ArgR compare
HEPCGN_14750 sgbU -0.7 -1.0 Putative L-ribulose-5-phosphate 3-epimerase SgbU compare
HEPCGN_04505 otsB -0.7 -1.4 trehalose-phosphatase compare
HEPCGN_17025 yrbN -0.7 -1.3 Uncharacterized protein YrbN compare
HEPCGN_14660 -0.7 -2.1 DUF3302 domain-containing protein compare
HEPCGN_13600 pstA -0.7 -1.1 phosphate ABC transporter permease PstA compare
HEPCGN_17020 nlpI -0.7 -4.2 lipoprotein NlpI compare
HEPCGN_05860 slyA -0.7 -0.8 transcriptional regulator SlyA compare
HEPCGN_00630 ybdJ -0.7 -0.9 Uncharacterized protein YbdJ compare
HEPCGN_11875 -0.7 -2.9 hypothetical protein compare
HEPCGN_03890 -0.7 -1.4 hypothetical protein compare
HEPCGN_22100 nuoM -0.7 -3.0 NADH-quinone oxidoreductase subunit M compare
HEPCGN_03690 -0.7 -1.3 Tellurite resistance protein TehB compare
HEPCGN_07985 gmhB -0.7 -2.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_21275 amiA -0.7 -2.1 N-acetylmuramoyl-L-alanine amidase AmiA compare
HEPCGN_11605 ubiC -0.7 -0.7 chorismate lyase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms