Experiment set3S606 for Escherichia coli ECOR38

Compare to:

K25

200 most important genes:

  gene name fitness t score description  
HEPCGN_16680 zapG -4.9 -3.4 Z-ring associated protein ZapG compare
HEPCGN_02315 -4.9 -1.7 MarR family transcriptional regulator compare
HEPCGN_13605 pstB -4.6 -2.7 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_01100 uof -4.6 -1.6 fur leader peptide compare
HEPCGN_08815 surA -4.3 -5.1 peptidylprolyl isomerase SurA compare
HEPCGN_08475 aceF -4.1 -2.7 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_20780 hscA -3.5 -2.4 Fe-S protein assembly chaperone HscA compare
HEPCGN_01010 ubiF -3.4 -2.0 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_00885 lipB -3.4 -3.2 lipoyl(octanoyl) transferase LipB compare
HEPCGN_22000 ackA -3.2 -3.1 acetate kinase compare
HEPCGN_13680 -2.9 -3.5 tRNA modification GTPase MnmE compare
HEPCGN_22105 nuoN -2.9 -7.6 NADH-quinone oxidoreductase subunit NuoN compare
HEPCGN_22090 nuoK -2.9 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
HEPCGN_22080 nuoI -2.8 -5.5 NADH-quinone oxidoreductase subunit NuoI compare
HEPCGN_08835 apaH -2.7 -5.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_16670 degS -2.7 -1.9 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_01305 sucA -2.7 -7.1 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_22095 nuoL -2.7 -7.3 NADH-quinone oxidoreductase subunit L compare
HEPCGN_08480 aceE -2.7 -4.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_24740 fadR -2.6 -4.3 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_08460 acnB -2.6 -5.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_20765 iscU -2.6 -1.2 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_04685 yobI -2.5 -1.2 Uncharacterized protein YobI compare
HEPCGN_22055 nuoC -2.4 -8.2 NADH-quinone oxidoreductase subunit C/D compare
HEPCGN_22100 nuoM -2.4 -7.0 NADH-quinone oxidoreductase subunit M compare
HEPCGN_02900 -2.4 -1.2 Type I toxin-antitoxin system Ibs family toxin compare
HEPCGN_16660 mdh -2.4 -3.9 malate dehydrogenase compare
HEPCGN_13500 mnmG -2.4 -7.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_15950 rpe -2.3 -2.2 ribulose-phosphate 3-epimerase compare
HEPCGN_13320 rep -2.3 -4.9 DNA helicase Rep compare
HEPCGN_21875 truA -2.3 -3.5 aspartate-semialdehyde dehydrogenase compare
HEPCGN_22085 nuoJ -2.3 -3.9 NADH-quinone oxidoreductase subunit J compare
HEPCGN_01120 seqA -2.3 -2.6 replication initiation negative regulator SeqA compare
HEPCGN_20770 iscA -2.2 -2.1 iron-sulfur cluster assembly protein IscA compare
HEPCGN_19505 mazE -2.2 -2.4 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_24920 prmC -2.2 -3.4 peptide chain release factor N(5)-glutamine methyltransferase compare
HEPCGN_22065 nuoF -2.2 -5.3 NADH-quinone oxidoreductase subunit NuoF compare
HEPCGN_22050 nuoB -2.2 -6.3 NADH-quinone oxidoreductase subunit NuoB compare
HEPCGN_23880 yceD -2.2 -2.7 23S rRNA accumulation protein YceD compare
HEPCGN_20250 ratA -2.2 -1.9 type II toxin-antitoxin system toxin RatA compare
HEPCGN_14540 rfaF -2.1 -2.3 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_21870 usg -2.1 -4.8 aspartate-semialdehyde dehydrogenase compare
HEPCGN_06950 clpP -2.0 -5.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_25055 hns -2.0 -1.3 DNA-binding transcriptional regulator H-NS compare
HEPCGN_12935 ubiE -2.0 -1.6 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_08665 cra -1.9 -3.5 catabolite repressor/activator compare
HEPCGN_01300 sdhB -1.9 -5.3 succinate dehydrogenase iron-sulfur subunit SdhB compare
HEPCGN_24875 ychF -1.9 -2.4 redox-regulated ATPase YchF compare
HEPCGN_12885 fre -1.9 -7.7 NAD(P)H-flavin reductase compare
HEPCGN_17495 Ile2_trna -1.9 -1.3 tRNA-Ile2(cat) compare
HEPCGN_05580 aroD -1.8 -2.2 3-dehydroquinate dehydratase compare
HEPCGN_22045 nuoA -1.8 -3.7 NADH-quinone oxidoreductase subunit NuoA compare
HEPCGN_22070 nuoG -1.8 -4.4 NADH-quinone oxidoreductase subunit NuoG compare
HEPCGN_06205 -1.8 -1.2 DUF5051 domain-containing protein compare
HEPCGN_03320 -1.7 -1.5 Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage compare
HEPCGN_22060 nuoE -1.7 -2.5 NADH-quinone oxidoreductase subunit NuoE compare
HEPCGN_21370 ptsI -1.7 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_00215 -1.7 -1.5 DNA-binding protein compare
HEPCGN_20655 glyA -1.7 -2.4 serine hydroxymethyltransferase compare
HEPCGN_20505 srmB -1.7 -7.4 ATP-dependent RNA helicase SrmB compare
HEPCGN_01310 odhB -1.6 -2.9 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
HEPCGN_06945 clpX -1.6 -5.3 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_20905 guaA -1.6 -5.3 glutamine-hydrolyzing GMP synthase compare
HEPCGN_01285 sdhC -1.6 -4.6 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_22930 trxB -1.6 -2.4 thioredoxin-disulfide reductase compare
HEPCGN_16325 yhdN -1.6 -1.5 Uncharacterized protein YhdN compare
HEPCGN_21365 crr -1.6 -2.1 PTS glucose transporter subunit IIA compare
HEPCGN_04720 lpxM -1.6 -3.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_05365 ydjO -1.5 -2.6 Uncharacterized protein YdjO compare
HEPCGN_10460 purA -1.5 -5.0 adenylosuccinate synthase compare
HEPCGN_23140 aspC -1.5 -3.4 aspartate transaminase compare
HEPCGN_22075 nuoH -1.5 -1.6 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_25600 cysB -1.5 -2.4 HTH-type transcriptional regulator CysB compare
HEPCGN_01275 gltA -1.5 -4.9 citrate synthase compare
HEPCGN_01320 sucD -1.5 -3.7 succinate--CoA ligase subunit alpha compare
HEPCGN_13290 wecA -1.5 -4.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_13165 cyaA -1.5 -5.8 class I adenylate cyclase compare
HEPCGN_08060 yaeP -1.5 -1.7 YaeP family protein compare
HEPCGN_19860 srlR -1.5 -5.0 glucitol operon DNA-binding transcriptional repressor SrlR compare
HEPCGN_05565 araC -1.5 -1.0 AraC family transcriptional regulator compare
HEPCGN_07450 cynT -1.5 -2.5 carbonic anhydrase CynT compare
HEPCGN_03870 -1.5 -1.4 tail assembly protein compare
HEPCGN_12340 metL -1.4 -7.0 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_01290 sdhD -1.4 -4.2 succinate dehydrogenase membrane anchor subunit compare
HEPCGN_19255 rppH -1.4 -1.6 RNA pyrophosphohydrolase compare
HEPCGN_05905 -1.4 -1.2 hypothetical protein compare
HEPCGN_04750 kdgA -1.4 -2.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HEPCGN_15205 hdeA -1.4 -0.7 acid-activated periplasmic chaperone HdeA compare
HEPCGN_01060 nagC -1.4 -4.5 DNA-binding transcriptional regulator NagC compare
HEPCGN_15355 pitA -1.4 -5.9 inorganic phosphate transporter PitA compare
HEPCGN_26750 -1.4 -1.7 phage tail protein compare
HEPCGN_04030 fliO -1.3 -1.0 flagellar type III secretion system protein FliO compare
HEPCGN_10840 tetR(B -1.3 -3.1 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_06990 cyoD -1.3 -2.2 cytochrome o ubiquinol oxidase subunit III compare
HEPCGN_18905 ygfS -1.3 -1.9 Putative electron transport protein YgfS compare
HEPCGN_14645 mtlR -1.3 -4.9 mannitol operon repressor MtlR compare
HEPCGN_23860 rne -1.3 -2.1 ribonuclease E compare
HEPCGN_03425 -1.3 -1.0 acetyltransferase compare
HEPCGN_20585 shoB -1.3 -1.0 Small toxic protein ShoB compare
HEPCGN_06115 mlc -1.3 -5.4 DNA-binding transcriptional repressor Mlc compare
HEPCGN_12860 trkH -1.3 -5.3 Trk system potassium transporter TrkH compare
HEPCGN_12475 pfkA -1.3 -3.2 6-phosphofructokinase compare
HEPCGN_17025 yrbN -1.3 -1.6 Uncharacterized protein YrbN compare
HEPCGN_01065 nagA -1.3 -4.2 N-acetylglucosamine-6-phosphate deacetylase compare
HEPCGN_25140 tonB -1.3 -1.7 TonB system transport protein TonB compare
HEPCGN_18620 speB -1.3 -3.1 agmatinase compare
HEPCGN_03905 zinT -1.3 -1.6 metal-binding protein ZinT compare
HEPCGN_26780 -1.2 -2.0 head completion/stabilization protein compare
HEPCGN_06935 lon_P403L -1.2 -3.2 Lon protease compare
HEPCGN_14530 -1.2 -1.9 O-antigen ligase domain-containing protein compare
HEPCGN_19900 recA -1.2 -2.5 recombinase RecA compare
HEPCGN_00460 yjdB -1.2 -0.9 phage tail protein compare
HEPCGN_12110 tuf -1.2 -0.7 elongation factor Tu compare
HEPCGN_03670 -1.2 -1.7 Putative bacterial toxin ydaT compare
HEPCGN_21285 yfeZ -1.2 -1.3 Inner membrane protein YfeZ compare
HEPCGN_13590 pstS -1.2 -4.0 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_12650 csqR -1.2 -4.9 HTH-type transcriptional repressor CsqR compare
HEPCGN_16345 trkA -1.2 -3.1 Trk system potassium transporter TrkA compare
HEPCGN_13250 wzxE -1.2 -4.6 lipid III flippase WzxE compare
HEPCGN_00170 -1.1 -6.7 peptidyl-arginine deiminase compare
HEPCGN_13620 -1.1 -2.2 hypothetical protein compare
HEPCGN_00370 -1.1 -1.2 Prophage CP4-57 regulatory protein (AlpA) compare
HEPCGN_18630 tkt -1.1 -2.4 transketolase compare
HEPCGN_02725 yehC -1.1 -1.3 putative fimbrial chaperone YehC compare
HEPCGN_13160 cyaY -1.1 -2.1 iron donor protein CyaY compare
HEPCGN_25045 rssB -1.1 -4.2 two-component system response regulator RssB compare
HEPCGN_01315 sucC -1.1 -2.6 ADP-forming succinate--CoA ligase subunit beta compare
HEPCGN_08755 -1.1 -1.5 hypothetical protein compare
HEPCGN_25720 sapF -1.1 -0.4 peptide ABC transporter ATP-binding protein SapF compare
HEPCGN_08550 yacG -1.1 -0.7 DNA gyrase inhibitor YacG compare
HEPCGN_26385 -1.1 -2.8 leucine Rich Repeat family protein compare
HEPCGN_16385 aroE -1.1 -4.2 shikimate dehydrogenase compare
HEPCGN_21790 -1.1 -1.4 fimbrial protein compare
HEPCGN_20860 bamB -1.1 -3.5 outer membrane protein assembly factor BamB compare
HEPCGN_25500 yciE -1.0 -0.7 Protein YciE compare
HEPCGN_10620 epmB -1.0 -4.0 EF-P beta-lysylation protein EpmB compare
HEPCGN_01295 sdhA -1.0 -4.2 succinate dehydrogenase flavoprotein subunit compare
HEPCGN_02550 -1.0 -2.0 Putative structural component HK97 gp of phage origin compare
HEPCGN_20790 iscX -1.0 -1.4 Fe-S cluster assembly protein IscX compare
HEPCGN_07985 gmhB -1.0 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_02330 -1.0 -1.0 hypothetical protein compare
HEPCGN_20680 yphD -1.0 -3.7 putative ABC transporter permease protein YphD compare
HEPCGN_19955 gshA -1.0 -5.1 glutamate--cysteine ligase compare
HEPCGN_12560 frvA -1.0 -0.6 PTS fructose transporter subunit IIA compare
HEPCGN_26060 ynbE -1.0 -1.7 YdbH family protein compare
HEPCGN_10455 nsrR -1.0 -4.7 nitric oxide-sensing transcriptional repressor NsrR compare
HEPCGN_13595 pstC -0.9 -1.9 phosphate ABC transporter permease PstC compare
HEPCGN_24275 -0.9 -1.5 hypothetical protein compare
HEPCGN_10095 treC -0.9 -2.8 alpha,alpha-phosphotrehalase compare
HEPCGN_02310 -0.9 -1.2 DUF4752 domain-containing protein compare
HEPCGN_03765 -0.9 -1.6 lysis protein compare
HEPCGN_17030 deaD -0.9 -2.8 ATP-dependent RNA helicase DeaD compare
HEPCGN_22935 lrp -0.9 -1.9 leucine-responsive transcriptional regulator Lrp compare
HEPCGN_04460 yecH -0.9 -2.2 Uncharacterized protein YecH compare
HEPCGN_23750 bssS -0.9 -1.8 biofilm formation regulator BssS compare
HEPCGN_16885 sfsB -0.9 -0.9 DNA-binding transcriptional regulator SfsB compare
HEPCGN_11880 -0.9 -1.6 hypothetical protein compare
HEPCGN_13700 ysdD -0.9 -1.0 Protein YsdD compare
HEPCGN_20545 lepA -0.9 -2.9 translation elongation factor 4 compare
HEPCGN_05830 ydhL -0.9 -0.9 Uncharacterized protein YdhL compare
HEPCGN_24885 ychH -0.9 -1.2 stress-induced protein YchH compare
HEPCGN_12375 ftsN -0.9 -1.8 cell division protein FtsN compare
HEPCGN_02770 mngR -0.9 -3.9 GntR family transcriptional regulator compare
HEPCGN_01820 glnQ -0.9 -1.5 glutamine ABC transporter ATP-binding protein GlnQ compare
HEPCGN_10655 aspA -0.9 -4.9 aspartate ammonia-lyase compare
HEPCGN_18845 sdhE -0.9 -0.7 FAD assembly factor SdhE compare
HEPCGN_21995 pta -0.9 -2.0 phosphate acetyltransferase compare
HEPCGN_19295 recC -0.9 -3.0 exodeoxyribonuclease V subunit gamma compare
HEPCGN_24685 ycgL -0.9 -1.1 Protein YcgL compare
HEPCGN_15800 -0.9 -3.4 NfuA family Fe-S biogenesis protein compare
HEPCGN_02610 -0.9 -1.5 phage tail protein compare
HEPCGN_08505 ampD -0.9 -4.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
HEPCGN_19305 recB -0.9 -2.8 exodeoxyribonuclease V subunit beta compare
HEPCGN_03335 -0.8 -0.6 restriction endonuclease compare
HEPCGN_17175 agaR -0.8 -2.3 aga operon transcriptional regulator AgaR compare
HEPCGN_15845 ompR_G63V -0.8 -2.7 two-component system response regulator OmpR compare
HEPCGN_15520 yhhL -0.8 -2.1 DUF1145 domain-containing protein compare
HEPCGN_18795 pepP -0.8 -2.2 Xaa-Pro aminopeptidase compare
HEPCGN_15750 glpE -0.8 -2.7 thiosulfate sulfurtransferase GlpE compare
HEPCGN_13550 atpC -0.8 -1.5 F0F1 ATP synthase subunit epsilon compare
HEPCGN_20930 -0.8 -1.4 DUF5384 domain-containing protein compare
HEPCGN_23690 mdoG -0.8 -2.7 glucans biosynthesis protein MdoG compare
HEPCGN_25925 fnr -0.8 -3.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
HEPCGN_24590 -0.8 -0.7 hypothetical protein compare
HEPCGN_21830 yfcA -0.8 -2.4 putative membrane transporter protein YfcA compare
HEPCGN_23165 ssuB -0.8 -1.8 aliphatic sulfonates ABC transporter ATP-binding protein compare
HEPCGN_21735 -0.8 -2.7 hypothetical protein compare
HEPCGN_03435 -0.8 -0.6 Uncharacterized deacetylase YaiS compare
HEPCGN_05800 grxD -0.8 -2.2 monothiol glutaredoxin 4 compare
HEPCGN_01280 ybgU -0.8 -2.9 Protein YbgU compare
HEPCGN_22035 lrhA -0.8 -3.1 transcriptional regulator LrhA compare
HEPCGN_26840 marR -0.8 -1.1 multiple antibiotic resistance transcriptional regulator MarR compare
HEPCGN_16720 nanR -0.8 -2.9 transcriptional regulator NanR compare
HEPCGN_11710 -0.8 -1.7 Putative inner membrane protein compare
HEPCGN_26905 mgtS -0.8 -0.8 protein MgtS compare
HEPCGN_16655 argR -0.8 -3.1 transcriptional regulator ArgR compare
HEPCGN_03795 -0.7 -1.3 hypothetical protein compare
HEPCGN_12205 sthA -0.7 -3.2 Si-specific NAD(P)(+) transhydrogenase compare
HEPCGN_06325 ynfS -0.7 -1.5 Protein YnfS compare
HEPCGN_13260 rffC -0.7 -2.5 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms