Experiment set3S601 for Escherichia coli ECOR38
Bas09
Group: phageMedia: LB_plus_SM_buffer + Phage (10 MOI)
Culturing: Ecoli_ECOR38_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 5/30/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 6 genes in this experiment
For phage Phage in Escherichia coli ECOR38
For phage Phage across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Choline and Betaine Uptake and Betaine Biosynthesis | 1 |
| D-ribose utilization | 1 |
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
| Type III secretion system orphans | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| ribose phosphorylation | 2 | 2 | 1 |
| 2-deoxy-D-ribose degradation I | 3 | 3 | 1 |
| peptidoglycan recycling II | 10 | 7 | 1 |
| peptidoglycan recycling I | 14 | 14 | 1 |