Experiment set3S591 for Escherichia coli ECOR38

Compare to:

Bas67

200 most important genes:

  gene name fitness t score description  
HEPCGN_02315 -4.7 -1.5 MarR family transcriptional regulator compare
HEPCGN_16680 zapG -4.6 -2.9 Z-ring associated protein ZapG compare
HEPCGN_13605 pstB -4.3 -2.2 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_08815 surA -3.6 -5.4 peptidylprolyl isomerase SurA compare
HEPCGN_14540 rfaF -3.4 -2.4 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_22000 ackA -3.3 -2.3 acetate kinase compare
HEPCGN_13290 wecA -3.3 -2.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_14530 -3.2 -3.1 O-antigen ligase domain-containing protein compare
HEPCGN_12935 ubiE -2.7 -1.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_21995 pta -2.6 -4.3 phosphate acetyltransferase compare
HEPCGN_00595 cusF -2.5 -1.4 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF compare
HEPCGN_18845 sdhE -2.5 -1.8 FAD assembly factor SdhE compare
HEPCGN_20780 hscA -2.5 -2.4 Fe-S protein assembly chaperone HscA compare
HEPCGN_20765 iscU -2.4 -1.0 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_08460 acnB -2.4 -4.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_16670 degS -2.4 -1.6 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_13320 rep -2.4 -4.5 DNA helicase Rep compare
HEPCGN_20250 ratA -2.3 -2.0 type II toxin-antitoxin system toxin RatA compare
HEPCGN_13250 wzxE -2.1 -7.1 lipid III flippase WzxE compare
HEPCGN_26335 pptA -2.0 -1.1 tautomerase PptA compare
HEPCGN_21370 ptsI -2.0 -4.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_13100 corA -2.0 -4.6 magnesium/cobalt transporter CorA compare
HEPCGN_03670 -2.0 -1.8 Putative bacterial toxin ydaT compare
HEPCGN_18630 tkt -1.9 -3.3 transketolase compare
HEPCGN_22930 trxB -1.9 -2.7 thioredoxin-disulfide reductase compare
HEPCGN_06950 clpP -1.9 -4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_21875 truA -1.9 -2.8 aspartate-semialdehyde dehydrogenase compare
HEPCGN_03695 -1.9 -1.0 Uncharacterized protein YmfE compare
HEPCGN_08475 aceF -1.9 -1.8 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_20545 lepA -1.9 -5.3 translation elongation factor 4 compare
HEPCGN_24740 fadR -1.8 -3.4 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_03905 zinT -1.8 -2.3 metal-binding protein ZinT compare
HEPCGN_00215 -1.8 -1.3 DNA-binding protein compare
HEPCGN_03765 -1.8 -1.9 lysis protein compare
HEPCGN_19505 mazE -1.8 -2.0 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_04015 fliR -1.7 -1.1 flagellar type III secretion system protein FliR compare
HEPCGN_08480 aceE -1.7 -4.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_25930 ogt -1.7 -2.2 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HEPCGN_01010 ubiF -1.7 -1.1 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_01455 tolR -1.7 -2.6 colicin uptake protein TolR compare
HEPCGN_16345 trkA -1.6 -4.2 Trk system potassium transporter TrkA compare
HEPCGN_20770 iscA -1.6 -1.9 iron-sulfur cluster assembly protein IscA compare
HEPCGN_12260 pflC -1.6 -1.9 [formate-C-acetyltransferase]-activating enzyme compare
HEPCGN_24590 -1.6 -1.0 hypothetical protein compare
HEPCGN_04385 marR -1.6 -2.0 MarR family transcriptional regulator compare
HEPCGN_07985 gmhB -1.6 -4.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_22075 nuoH -1.6 -1.3 NADH-quinone oxidoreductase subunit NuoH compare
HEPCGN_02305 -1.6 -1.8 hypothetical protein compare
HEPCGN_21870 usg -1.6 -3.2 aspartate-semialdehyde dehydrogenase compare
HEPCGN_13500 mnmG -1.5 -5.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_00885 lipB -1.5 -2.2 lipoyl(octanoyl) transferase LipB compare
HEPCGN_03755 -1.5 -1.1 DUF1327 domain-containing protein compare
HEPCGN_12350 metJ -1.5 -1.5 met regulon transcriptional regulator MetJ compare
HEPCGN_00405 -1.5 -0.9 hypothetical protein compare
HEPCGN_08835 apaH -1.4 -4.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_06350 -1.4 -1.4 Uncharacterized protein YdfR compare
HEPCGN_18365 papA -1.4 -3.0 P fimbria major subunit PapA compare
HEPCGN_12115 Thr_trna -1.4 -1.0 tRNA-Thr(ggt) compare
HEPCGN_04030 fliO -1.4 -0.9 flagellar type III secretion system protein FliO compare
HEPCGN_20655 glyA -1.4 -1.8 serine hydroxymethyltransferase compare
HEPCGN_20570 pdxJ -1.4 -3.1 pyridoxine 5'-phosphate synthase compare
HEPCGN_25600 cysB -1.4 -1.8 HTH-type transcriptional regulator CysB compare
HEPCGN_03330 yeeS -1.4 -1.0 UPF0758 protein YeeS compare
HEPCGN_01470 pal -1.3 -2.1 peptidoglycan-associated lipoprotein Pal compare
HEPCGN_17495 Ile2_trna -1.3 -0.9 tRNA-Ile2(cat) compare
HEPCGN_03930 hprS -1.3 -1.4 two-component system sensor histidine kinase HprS compare
HEPCGN_22885 cspD -1.3 -1.2 cold shock-like protein CspD compare
HEPCGN_24875 ychF -1.3 -1.6 redox-regulated ATPase YchF compare
HEPCGN_21760 sixA -1.3 -2.3 phosphohistidine phosphatase SixA compare
HEPCGN_23990 ndh -1.2 -3.3 NADH-quinone dehydrogenase compare
HEPCGN_10565 epmA -1.2 -2.0 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_23470 -1.2 -1.1 YccE family protein compare
HEPCGN_26700 tfaE -1.2 -3.0 Prophage tail fiber assembly -like protein TfaE compare
HEPCGN_06935 lon_P403L -1.2 -3.8 Lon protease compare
HEPCGN_04720 lpxM -1.2 -1.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_26060 ynbE -1.2 -1.3 YdbH family protein compare
HEPCGN_26580 -1.2 -1.2 fimbria/pilus periplasmic chaperone compare
HEPCGN_25505 yciF -1.2 -1.1 Protein YciF compare
HEPCGN_12375 ftsN -1.2 -2.9 cell division protein FtsN compare
HEPCGN_20905 guaA -1.2 -3.4 glutamine-hydrolyzing GMP synthase compare
HEPCGN_16770 arcB -1.1 -1.9 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_23185 ssuE -1.1 -2.0 NADPH-dependent FMN reductase compare
HEPCGN_25720 sapF -1.1 -0.7 peptide ABC transporter ATP-binding protein SapF compare
HEPCGN_23915 fabF -1.1 -3.1 beta-ketoacyl-ACP synthase II compare
HEPCGN_13995 -1.1 -1.5 Uncharacterized protein YicS compare
HEPCGN_06405 -1.1 -1.4 hypothetical protein compare
HEPCGN_23880 yceD -1.1 -2.0 23S rRNA accumulation protein YceD compare
HEPCGN_10460 purA -1.1 -3.7 adenylosuccinate synthase compare
HEPCGN_11730 -1.1 -1.0 Conserved phage-related protein compare
HEPCGN_01100 uof -1.1 -0.6 fur leader peptide compare
HEPCGN_03340 -1.1 -0.7 DUF945 domain-containing protein compare
HEPCGN_17030 deaD -1.0 -3.3 ATP-dependent RNA helicase DeaD compare
HEPCGN_26780 -1.0 -1.7 head completion/stabilization protein compare
HEPCGN_14240 -1.0 -1.0 IS3 family transposase compare
HEPCGN_03395 -1.0 -1.3 Phosphotriesterase compare
HEPCGN_09630 fimB -1.0 -1.9 type 1 fimbria switch DNA invertase FimB compare
HEPCGN_23485 wrbA -1.0 -3.7 NAD(P)H:quinone oxidoreductase compare
HEPCGN_01285 sdhC -1.0 -2.8 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_24275 -1.0 -1.9 hypothetical protein compare
HEPCGN_20940 yfgG -1.0 -1.9 Uncharacterized protein YfgG compare
HEPCGN_20860 bamB -1.0 -2.8 outer membrane protein assembly factor BamB compare
HEPCGN_06785 apt -1.0 -1.3 adenine phosphoribosyltransferase compare
HEPCGN_04740 zwf -1.0 -3.5 glucose-6-phosphate dehydrogenase compare
HEPCGN_04035 fliN -1.0 -1.2 flagellar motor switch protein FliN compare
HEPCGN_16130 yheO -1.0 -2.2 Uncharacterized protein YheO compare
HEPCGN_04675 ruvC -1.0 -1.3 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_19900 recA -1.0 -1.6 recombinase RecA compare
HEPCGN_23165 ssuB -1.0 -1.4 aliphatic sulfonates ABC transporter ATP-binding protein compare
HEPCGN_01265 -1.0 -1.2 C4-dicarboxylate ABC transporter permease compare
HEPCGN_15945 dam -1.0 -2.0 adenine-specific DNA-methyltransferase compare
HEPCGN_19985 emrR -1.0 -1.2 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
HEPCGN_19720 mopI -1.0 -2.0 transporter compare
HEPCGN_27080 -1.0 -1.4 DNA packaging protein from bacteriophage origin compare
HEPCGN_02295 -1.0 -2.6 Ead/Ea22-like protein compare
HEPCGN_05935 rsxB -0.9 -2.1 electron transport complex subunit RsxB compare
HEPCGN_03955 yedJ -0.9 -1.1 phosphohydrolase compare
HEPCGN_04660 nudB -0.9 -2.2 dihydroneopterin triphosphate diphosphatase compare
HEPCGN_25055 hns -0.9 -0.8 DNA-binding transcriptional regulator H-NS compare
HEPCGN_20505 srmB -0.9 -3.7 ATP-dependent RNA helicase SrmB compare
HEPCGN_05015 dmlA -0.9 -2.5 multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase compare
HEPCGN_11135 yjdJ -0.9 -1.2 Uncharacterized protein YjdJ compare
HEPCGN_01120 seqA -0.9 -1.1 replication initiation negative regulator SeqA compare
HEPCGN_05905 -0.9 -0.7 hypothetical protein compare
HEPCGN_12340 metL -0.9 -4.8 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_13680 -0.9 -1.4 tRNA modification GTPase MnmE compare
HEPCGN_25270 -0.9 -2.4 TrmB family transcriptional regulator compare
HEPCGN_08845 -0.9 -0.8 antitoxin compare
HEPCGN_24280 dksA -0.9 -2.5 conjugal transfer protein TraR compare
HEPCGN_26180 -0.9 -1.2 Ribosomal-protein-serine N-acetyltransferase compare
HEPCGN_13595 pstC -0.9 -1.7 phosphate ABC transporter permease PstC compare
HEPCGN_13165 cyaA -0.9 -4.5 class I adenylate cyclase compare
HEPCGN_16885 sfsB -0.9 -0.8 DNA-binding transcriptional regulator SfsB compare
HEPCGN_14660 -0.9 -2.4 DUF3302 domain-containing protein compare
HEPCGN_01065 nagA -0.9 -2.8 N-acetylglucosamine-6-phosphate deacetylase compare
HEPCGN_16835 kdsC -0.9 -1.9 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HEPCGN_04925 manX -0.9 -1.7 PTS mannose transporter subunit IIAB compare
HEPCGN_11635 -0.9 -0.9 sugar ABC transporter compare
HEPCGN_19765 hycB -0.9 -1.7 formate hydrogenlyase subunit HycB compare
HEPCGN_05215 nudG -0.9 -2.6 CTP pyrophosphohydrolase compare
HEPCGN_25610 -0.9 -0.9 Protein, C-ter, truncated protein compare
HEPCGN_15340 -0.9 -1.1 Protein YriB compare
HEPCGN_07450 cynT -0.9 -2.2 carbonic anhydrase CynT compare
HEPCGN_06945 clpX -0.9 -2.7 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_14495 rfaJ -0.9 -2.7 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_07715 -0.8 -0.8 50S ribosomal protein L36 2 compare
HEPCGN_08550 yacG -0.8 -0.5 DNA gyrase inhibitor YacG compare
HEPCGN_15930 aroK -0.8 -0.7 shikimate kinase AroK compare
HEPCGN_24005 bhsA -0.8 -0.7 multiple stress resistance protein BhsA compare
HEPCGN_00170 -0.8 -5.1 peptidyl-arginine deiminase compare
HEPCGN_03690 -0.8 -1.2 Tellurite resistance protein TehB compare
HEPCGN_14635 yibL -0.8 -0.6 YibL family ribosome-associated protein compare
HEPCGN_12860 trkH -0.8 -3.3 Trk system potassium transporter TrkH compare
HEPCGN_00620 nfsB -0.8 -2.1 oxygen-insensitive NAD(P)H nitroreductase compare
HEPCGN_20875 -0.8 -1.4 Intimin ((Attaching and effacing protein) or invasin protein (SivH-like)) compare
HEPCGN_07505 -0.8 -3.0 Uncharacterized protein YahM compare
HEPCGN_11740 -0.8 -1.1 phage major tail tube protein compare
HEPCGN_24120 -0.8 -1.5 DUF4222 domain-containing protein compare
HEPCGN_24505 -0.8 -0.7 Conserved hypothetical phage-related protein compare
HEPCGN_24790 -0.8 -1.3 hypothetical protein compare
HEPCGN_06015 manA -0.8 -1.1 mannose-6-phosphate isomerase compare
HEPCGN_19255 rppH -0.8 -1.1 RNA pyrophosphohydrolase compare
HEPCGN_19955 gshA -0.8 -3.6 glutamate--cysteine ligase compare
HEPCGN_19290 ppdC -0.8 -1.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
HEPCGN_19365 ygdI -0.8 -1.1 Uncharacterized lipoprotein YgdI compare
HEPCGN_22940 ftsK -0.8 -1.7 DNA translocase FtsK compare
HEPCGN_27390 -0.8 -4.4 transcriptional regulator compare
HEPCGN_22515 napD -0.8 -0.9 chaperone NapD compare
HEPCGN_07710 rpmE2-1 -0.8 -1.0 type B 50S ribosomal protein L31 compare
HEPCGN_03045 -0.8 -2.5 GDP-mannose 4,6-dehydratase compare
HEPCGN_24835 fepC -0.8 -1.9 ABC transporter ATP-binding protein compare
HEPCGN_03705 -0.8 -0.5 protein hokC compare
HEPCGN_21070 hyfA -0.8 -1.7 hydrogenase 4 subunit HyfA compare
HEPCGN_03055 gmm -0.8 -1.8 GDP-mannose mannosyl hydrolase compare
HEPCGN_00355 -0.8 -1.3 head decoration protein compare
HEPCGN_16655 argR -0.8 -3.1 transcriptional regulator ArgR compare
HEPCGN_22015 hxpA -0.8 -3.4 hexitol phosphatase HxpA compare
HEPCGN_05130 yeaC -0.8 -0.9 Uncharacterized protein YeaC compare
HEPCGN_13590 pstS -0.8 -2.6 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_02755 thiM -0.7 -1.1 hydroxyethylthiazole kinase compare
HEPCGN_03980 yodC -0.7 -2.2 Uncharacterized protein YodC compare
HEPCGN_02500 -0.7 -2.9 HNH endonuclease compare
HEPCGN_13970 -0.7 -1.8 IpaD/SipD/SspD family type III secretion system needle tip protein compare
HEPCGN_18580 gshB -0.7 -3.5 glutathione synthase compare
HEPCGN_14850 yiaA -0.7 -1.8 YiaB family inner membrane protein compare
HEPCGN_18080 gspJ -0.7 -1.2 general secretion pathway protein J compare
HEPCGN_01450 tolQ -0.7 -2.0 Tol-Pal system protein TolQ compare
HEPCGN_10485 hfq -0.7 -1.5 RNA chaperone Hfq compare
HEPCGN_25595 -0.7 -1.2 type I DNA topoisomerase compare
HEPCGN_15625 -0.7 -1.4 Immunity protein 35 compare
HEPCGN_12790 -0.7 -0.4 hypothetical protein compare
HEPCGN_25140 tonB -0.7 -1.2 TonB system transport protein TonB compare
HEPCGN_12720 typA -0.7 -4.2 ribosome-dependent GTPase TypA compare
HEPCGN_10840 tetR(B -0.7 -1.1 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_10095 treC -0.7 -2.0 alpha,alpha-phosphotrehalase compare
HEPCGN_10390 ulaR -0.7 -3.4 HTH-type transcriptional regulator UlaR compare
HEPCGN_04095 yedF -0.7 -0.8 sulfurtransferase-like selenium metabolism protein YedF compare
HEPCGN_15800 -0.7 -2.7 NfuA family Fe-S biogenesis protein compare
HEPCGN_02745 rcnA -0.7 -1.6 Nickel/cobalt efflux system RcnA compare
HEPCGN_00810 citX -0.7 -0.7 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
HEPCGN_10960 -0.7 -2.1 AlpA family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms