Experiment set3S583 for Escherichia coli ECOR38

Compare to:

TP12

200 most important genes:

  gene name fitness t score description  
HEPCGN_08815 surA -5.4 -3.8 peptidylprolyl isomerase SurA compare
HEPCGN_16680 zapG -5.1 -3.5 Z-ring associated protein ZapG compare
HEPCGN_02315 -5.1 -1.8 MarR family transcriptional regulator compare
HEPCGN_13605 pstB -4.8 -2.8 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_14530 -4.3 -2.9 O-antigen ligase domain-containing protein compare
HEPCGN_12560 frvA -3.8 -1.3 PTS fructose transporter subunit IIA compare
HEPCGN_24740 fadR -3.8 -4.4 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_13290 wecA -3.7 -2.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_01010 ubiF -3.6 -2.2 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_20250 ratA -3.6 -2.4 type II toxin-antitoxin system toxin RatA compare
HEPCGN_15930 aroK -3.5 -1.8 shikimate kinase AroK compare
HEPCGN_03670 -3.4 -2.7 Putative bacterial toxin ydaT compare
HEPCGN_13320 rep -3.3 -4.5 DNA helicase Rep compare
HEPCGN_12935 ubiE -3.2 -2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_14495 rfaJ -3.1 -5.6 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_08460 acnB -3.0 -5.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_15945 dam -3.0 -2.9 adenine-specific DNA-methyltransferase compare
HEPCGN_16670 degS -2.9 -2.0 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_04685 yobI -2.8 -1.4 Uncharacterized protein YobI compare
HEPCGN_20765 iscU -2.7 -1.3 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_13100 corA -2.3 -4.7 magnesium/cobalt transporter CorA compare
HEPCGN_14540 rfaF -2.2 -2.5 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_00885 lipB -2.2 -3.2 lipoyl(octanoyl) transferase LipB compare
HEPCGN_18630 tkt -2.2 -4.5 transketolase compare
HEPCGN_21995 pta -2.1 -3.6 phosphate acetyltransferase compare
HEPCGN_14525 -2.1 -5.0 beta1,3-glucosyltransferase compare
HEPCGN_22000 ackA -2.1 -3.4 acetate kinase compare
HEPCGN_00825 -2.1 -1.6 citrate lyase acyl carrier protein 1 compare
HEPCGN_19900 recA -2.0 -3.0 recombinase RecA compare
HEPCGN_23880 yceD -2.0 -3.6 23S rRNA accumulation protein YceD compare
HEPCGN_21870 usg -2.0 -5.7 aspartate-semialdehyde dehydrogenase compare
HEPCGN_04675 ruvC -2.0 -2.0 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_15950 rpe -2.0 -2.4 ribulose-phosphate 3-epimerase compare
HEPCGN_21875 truA -2.0 -4.0 aspartate-semialdehyde dehydrogenase compare
HEPCGN_26335 pptA -2.0 -1.4 tautomerase PptA compare
HEPCGN_00405 -2.0 -1.3 hypothetical protein compare
HEPCGN_10840 tetR(B -2.0 -5.0 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_22885 cspD -2.0 -1.9 cold shock-like protein CspD compare
HEPCGN_24875 ychF -1.9 -2.0 redox-regulated ATPase YchF compare
HEPCGN_16490 yhdU -1.9 -1.4 Inner membrane protein YhdU compare
HEPCGN_21760 sixA -1.9 -2.4 phosphohistidine phosphatase SixA compare
HEPCGN_21370 ptsI -1.9 -4.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_06935 lon_P403L -1.9 -5.4 Lon protease compare
HEPCGN_06395 -1.8 -1.3 Lambda prophage-derived head-to-tail joining protein W compare
HEPCGN_20780 hscA -1.8 -2.7 Fe-S protein assembly chaperone HscA compare
HEPCGN_12895 rfaH -1.8 -3.7 transcription/translation regulatory transformer protein RfaH compare
HEPCGN_20770 iscA -1.8 -1.9 iron-sulfur cluster assembly protein IscA compare
HEPCGN_17495 Ile2_trna -1.8 -1.4 tRNA-Ile2(cat) compare
HEPCGN_01100 uof -1.7 -1.1 fur leader peptide compare
HEPCGN_10460 purA -1.6 -4.9 adenylosuccinate synthase compare
HEPCGN_25055 hns -1.6 -1.1 DNA-binding transcriptional regulator H-NS compare
HEPCGN_14490 waaO -1.6 -3.5 lipopolysaccharide 3-alpha-galactosyltransferase compare
HEPCGN_00215 -1.6 -1.6 DNA-binding protein compare
HEPCGN_13250 wzxE -1.6 -6.4 lipid III flippase WzxE compare
HEPCGN_04030 fliO -1.5 -1.2 flagellar type III secretion system protein FliO compare
HEPCGN_26960 -1.5 -0.7 Putative DNA-invertase compare
HEPCGN_22940 ftsK -1.5 -3.9 DNA translocase FtsK compare
HEPCGN_22930 trxB -1.5 -2.6 thioredoxin-disulfide reductase compare
HEPCGN_02305 -1.5 -1.8 hypothetical protein compare
HEPCGN_03765 -1.5 -2.3 lysis protein compare
HEPCGN_01305 sucA -1.5 -3.4 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_13500 mnmG -1.4 -4.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_12475 pfkA -1.4 -4.1 6-phosphofructokinase compare
HEPCGN_12340 metL -1.4 -6.3 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_19505 mazE -1.3 -2.5 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_02810 gatB -1.3 -1.4 PTS galactitol transporter subunit IIB compare
HEPCGN_25600 cysB -1.3 -2.1 HTH-type transcriptional regulator CysB compare
HEPCGN_20125 -1.3 -1.0 hypothetical protein compare
HEPCGN_24285 -1.3 -1.5 cell division protein ZapA compare
HEPCGN_05565 araC -1.2 -1.0 AraC family transcriptional regulator compare
HEPCGN_25500 yciE -1.2 -0.8 Protein YciE compare
HEPCGN_01285 sdhC -1.2 -4.2 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_19255 rppH -1.2 -1.8 RNA pyrophosphohydrolase compare
HEPCGN_16345 trkA -1.2 -3.5 Trk system potassium transporter TrkA compare
HEPCGN_18845 sdhE -1.2 -1.3 FAD assembly factor SdhE compare
HEPCGN_01120 seqA -1.1 -1.5 replication initiation negative regulator SeqA compare
HEPCGN_26330 -1.1 -2.3 hypothetical protein compare
HEPCGN_01455 tolR -1.1 -2.5 colicin uptake protein TolR compare
HEPCGN_22105 nuoN -1.1 -4.4 NADH-quinone oxidoreductase subunit NuoN compare
HEPCGN_00170 -1.1 -5.5 peptidyl-arginine deiminase compare
HEPCGN_23140 aspC -1.1 -2.8 aspartate transaminase compare
HEPCGN_08825 rsmA -1.1 -3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
HEPCGN_04720 lpxM -1.1 -3.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_04390 -1.1 -3.1 hypothetical protein compare
HEPCGN_01295 sdhA -1.1 -4.5 succinate dehydrogenase flavoprotein subunit compare
HEPCGN_23570 pgaD -1.1 -1.8 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
HEPCGN_01320 sucD -1.0 -3.5 succinate--CoA ligase subunit alpha compare
HEPCGN_25320 -1.0 -1.0 Ybl58 compare
HEPCGN_16500 fis -1.0 -1.0 DNA-binding transcriptional regulator Fis compare
HEPCGN_25325 -1.0 -0.9 SAR-endolysin compare
HEPCGN_19295 recC -1.0 -3.4 exodeoxyribonuclease V subunit gamma compare
HEPCGN_18315 -1.0 -1.1 Outer membrane protein compare
HEPCGN_08835 apaH -1.0 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_05770 purR -1.0 -4.2 HTH-type transcriptional repressor PurR compare
HEPCGN_20505 srmB -1.0 -4.9 ATP-dependent RNA helicase SrmB compare
HEPCGN_13680 -1.0 -1.8 tRNA modification GTPase MnmE compare
HEPCGN_03840 -1.0 -1.8 phage tail protein compare
HEPCGN_26880 -1.0 -1.5 GntR family transcriptional regulator compare
HEPCGN_18855 fldB -1.0 -3.8 flavodoxin FldB compare
HEPCGN_04315 -1.0 -3.2 capsid assembly protein compare
HEPCGN_22670 lpxT -1.0 -2.7 Kdo(2)-lipid A phosphotransferase compare
HEPCGN_26180 -1.0 -1.7 Ribosomal-protein-serine N-acetyltransferase compare
HEPCGN_20905 guaA -1.0 -3.1 glutamine-hydrolyzing GMP synthase compare
HEPCGN_20545 lepA -1.0 -3.3 translation elongation factor 4 compare
HEPCGN_22060 nuoE -1.0 -2.0 NADH-quinone oxidoreductase subunit NuoE compare
HEPCGN_22080 nuoI -1.0 -2.9 NADH-quinone oxidoreductase subunit NuoI compare
HEPCGN_09895 -0.9 -0.8 Transposase compare
HEPCGN_25930 ogt -0.9 -1.0 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HEPCGN_27265 traI -0.9 -1.4 conjugative transfer relaxase/helicase TraI compare
HEPCGN_15355 pitA -0.9 -4.5 inorganic phosphate transporter PitA compare
HEPCGN_08550 yacG -0.9 -0.7 DNA gyrase inhibitor YacG compare
HEPCGN_05685 ydhY -0.9 -2.0 ferredoxin-like protein compare
HEPCGN_08480 aceE -0.9 -2.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_24685 ycgL -0.9 -2.3 Protein YcgL compare
HEPCGN_14520 rfaJ -0.9 -1.7 UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase compare
HEPCGN_10565 epmA -0.9 -1.5 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_18220 -0.9 -1.6 hypothetical protein compare
HEPCGN_26580 -0.9 -1.3 fimbria/pilus periplasmic chaperone compare
HEPCGN_19305 recB -0.9 -2.3 exodeoxyribonuclease V subunit beta compare
HEPCGN_05580 aroD -0.9 -1.8 3-dehydroquinate dehydratase compare
HEPCGN_18550 yggU -0.9 -1.9 DUF167 domain-containing protein compare
HEPCGN_04740 zwf -0.9 -4.3 glucose-6-phosphate dehydrogenase compare
HEPCGN_21365 crr -0.9 -1.6 PTS glucose transporter subunit IIA compare
HEPCGN_21820 aroC -0.8 -2.1 chorismate synthase compare
HEPCGN_11135 yjdJ -0.8 -1.4 Uncharacterized protein YjdJ compare
HEPCGN_08475 aceF -0.8 -0.9 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_22665 mepS -0.8 -3.2 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
HEPCGN_03870 -0.8 -1.0 tail assembly protein compare
HEPCGN_22500 yojO -0.8 -1.7 Uncharacterized protein YojO compare
HEPCGN_19755 hypA -0.8 -2.4 hydrogenase maturation nickel metallochaperone HypA compare
HEPCGN_25505 yciF -0.8 -1.2 Protein YciF compare
HEPCGN_23860 rne -0.8 -1.6 ribonuclease E compare
HEPCGN_01290 sdhD -0.8 -2.8 succinate dehydrogenase membrane anchor subunit compare
HEPCGN_05855 ydhI -0.8 -1.2 Uncharacterized protein YdhI compare
HEPCGN_17060 yhbS -0.8 -1.7 Uncharacterized N-acetyltransferase YhbS compare
HEPCGN_16655 argR -0.8 -3.9 transcriptional regulator ArgR compare
HEPCGN_16805 ptsN -0.8 -3.3 PTS IIA-like nitrogen regulatory protein PtsN compare
HEPCGN_07140 yajC -0.8 -0.7 preprotein translocase subunit YajC compare
HEPCGN_25210 -0.8 -3.3 Cro/Cl family transcriptional regulator compare
HEPCGN_23990 ndh -0.8 -2.1 NADH-quinone dehydrogenase compare
HEPCGN_19040 -0.8 -1.5 YopN/LcrE/InvE/MxiC type III secretion system gatekeeper compare
HEPCGN_19290 ppdC -0.8 -1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
HEPCGN_06945 clpX -0.8 -3.2 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_20585 shoB -0.8 -0.7 Small toxic protein ShoB compare
HEPCGN_18620 speB -0.8 -2.7 agmatinase compare
HEPCGN_06785 apt -0.8 -1.3 adenine phosphoribosyltransferase compare
HEPCGN_05440 pheM -0.8 -0.6 pheST operon leader peptide PheM compare
HEPCGN_10550 asd -0.8 -0.7 archaetidylserine decarboxylase compare
HEPCGN_01065 nagA -0.8 -2.6 N-acetylglucosamine-6-phosphate deacetylase compare
HEPCGN_21680 -0.8 -1.1 LuxR family transcriptional regulator compare
HEPCGN_03905 zinT -0.7 -1.0 metal-binding protein ZinT compare
HEPCGN_07460 codA -0.7 -1.8 cytosine/isoguanine deaminase compare
HEPCGN_03705 -0.7 -0.7 protein hokC compare
HEPCGN_05410 yniD -0.7 -2.3 Uncharacterized protein YniD compare
HEPCGN_09040 mokC -0.7 -1.2 Regulatory protein MokC compare
HEPCGN_19955 gshA -0.7 -3.7 glutamate--cysteine ligase compare
HEPCGN_02455 -0.7 -0.9 DUF826 domain-containing protein compare
HEPCGN_12930 ubiJ -0.7 -1.2 ubiquinone biosynthesis protein UbiJ compare
HEPCGN_15800 -0.7 -3.9 NfuA family Fe-S biogenesis protein compare
HEPCGN_00690 fepD -0.7 -3.9 ferrienterobactin ABC transporter permease compare
HEPCGN_04695 ruvB -0.7 -1.0 Holliday junction branch migration DNA helicase RuvB compare
HEPCGN_13495 mioC -0.7 -4.0 FMN-binding protein MioC compare
HEPCGN_18750 argP -0.7 -3.3 DNA-binding transcriptional regulator ArgP compare
HEPCGN_14320 frwB -0.7 -1.2 PTS fructose transporter subunit IIB compare
HEPCGN_22100 nuoM -0.7 -3.2 NADH-quinone oxidoreductase subunit M compare
HEPCGN_03310 yeeW -0.7 -1.3 Protein YeeW compare
HEPCGN_00355 -0.7 -1.5 head decoration protein compare
HEPCGN_10020 rraB -0.7 -2.5 ribonuclease E inhibitor RraB compare
HEPCGN_25680 rnb -0.7 -2.5 exoribonuclease II compare
HEPCGN_12860 trkH -0.7 -3.3 Trk system potassium transporter TrkH compare
HEPCGN_03330 yeeS -0.7 -0.9 UPF0758 protein YeeS compare
HEPCGN_17070 yhbP -0.7 -2.7 YhbP family protein compare
HEPCGN_12115 Thr_trna -0.7 -0.9 tRNA-Thr(ggt) compare
HEPCGN_26175 ydcH -0.7 -1.9 Uncharacterized protein YdcH compare
HEPCGN_03690 -0.7 -1.2 Tellurite resistance protein TehB compare
HEPCGN_11635 -0.7 -1.0 sugar ABC transporter compare
HEPCGN_11880 -0.7 -1.0 hypothetical protein compare
HEPCGN_16770 arcB -0.7 -1.7 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_05860 slyA -0.7 -1.0 transcriptional regulator SlyA compare
HEPCGN_04505 otsB -0.7 -1.5 trehalose-phosphatase compare
HEPCGN_00915 rlmH -0.7 -0.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
HEPCGN_10115 relB -0.7 -1.4 type II toxin-antitoxin system RelB/DinJ family antitoxin compare
HEPCGN_10455 nsrR -0.7 -3.1 nitric oxide-sensing transcriptional repressor NsrR compare
HEPCGN_10830 -0.7 -1.8 amino acid-binding protein compare
HEPCGN_19715 ygbA -0.7 -1.5 nitrous oxide-stimulated promoter family protein compare
HEPCGN_26260 ortT -0.7 -1.2 orphan toxin OrtT compare
HEPCGN_16970 fMet_trna -0.7 -0.7 tRNA-fMet(cat) compare
HEPCGN_15745 glpD -0.7 -2.2 glycerol-3-phosphate dehydrogenase compare
HEPCGN_22065 nuoF -0.7 -2.9 NADH-quinone oxidoreductase subunit NuoF compare
HEPCGN_25230 -0.7 -1.2 DUF1627 domain-containing protein compare
HEPCGN_24455 -0.7 -0.7 Gp37 protein compare
HEPCGN_05400 pfkB -0.7 -2.1 6-phosphofructokinase II compare
HEPCGN_02135 -0.7 -0.6 hypothetical protein compare
HEPCGN_13165 cyaA -0.7 -3.4 class I adenylate cyclase compare
HEPCGN_09795 -0.7 -1.1 KpLE2 phage-like element compare
HEPCGN_26905 mgtS -0.7 -0.7 protein MgtS compare
HEPCGN_17290 yhaI -0.6 -2.0 Inner membrane protein YhaI compare
HEPCGN_06955 tig -0.6 -2.3 trigger factor compare
HEPCGN_06725 ybaK -0.6 -1.6 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
HEPCGN_06235 -0.6 -2.1 methyltransferase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms