Experiment set3S582 for Escherichia coli ECOR38

Compare to:

JK38

200 most important genes:

  gene name fitness t score description  
HEPCGN_12895 rfaH -8.2 -8.0 transcription/translation regulatory transformer protein RfaH compare
HEPCGN_14495 rfaJ -6.3 -7.4 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_14525 -5.8 -4.0 beta1,3-glucosyltransferase compare
HEPCGN_25050 galU -5.5 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
HEPCGN_08815 surA -5.5 -3.8 peptidylprolyl isomerase SurA compare
HEPCGN_16680 zapG -5.2 -3.6 Z-ring associated protein ZapG compare
HEPCGN_13250 wzxE -5.1 -13.2 lipid III flippase WzxE compare
HEPCGN_02315 -5.0 -1.8 MarR family transcriptional regulator compare
HEPCGN_13605 pstB -4.9 -2.8 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_14485 rfaP -4.9 -8.2 lipopolysaccharide core heptose(I) kinase RfaP compare
HEPCGN_16920 greA -4.8 -1.7 transcription elongation factor GreA compare
HEPCGN_14480 rfaG -4.8 -10.7 Lipopolysaccharide core biosynthesis protein RfaG compare
HEPCGN_06015 manA -4.7 -3.3 mannose-6-phosphate isomerase compare
HEPCGN_01100 uof -4.7 -1.7 fur leader peptide compare
HEPCGN_16500 fis -4.7 -3.2 DNA-binding transcriptional regulator Fis compare
HEPCGN_12910 tatB -4.7 -1.7 Sec-independent protein translocase protein TatB compare
HEPCGN_24800 ldcA -4.6 -6.2 muramoyltetrapeptide carboxypeptidase compare
HEPCGN_14530 -4.4 -3.0 O-antigen ligase domain-containing protein compare
HEPCGN_05670 lpp -4.4 -3.5 murein lipoprotein Lpp compare
HEPCGN_24920 prmC -4.4 -3.0 peptide chain release factor N(5)-glutamine methyltransferase compare
HEPCGN_13320 rep -4.3 -2.9 DNA helicase Rep compare
HEPCGN_00885 lipB -4.2 -2.9 lipoyl(octanoyl) transferase LipB compare
HEPCGN_21995 pta -4.2 -2.9 phosphate acetyltransferase compare
HEPCGN_03185 wzzB -4.2 -5.0 LPS O-antigen chain length determinant protein WzzB compare
HEPCGN_04720 lpxM -4.1 -5.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_14540 rfaF -4.0 -2.8 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_01560 galT -4.0 -9.0 galactose-1-phosphate uridylyltransferase compare
HEPCGN_13290 wecA -3.9 -2.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_22000 ackA -3.8 -2.6 acetate kinase compare
HEPCGN_03670 -3.7 -2.6 Putative bacterial toxin ydaT compare
HEPCGN_24740 fadR -3.6 -4.3 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_01010 ubiF -3.6 -2.2 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_16505 dusB -3.6 -7.6 tRNA dihydrouridine synthase DusB compare
HEPCGN_10490 miaA -3.5 -5.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HEPCGN_20525 rseA -3.4 -4.1 anti-sigma-E factor RseA compare
HEPCGN_17495 Ile2_trna -3.4 -1.7 tRNA-Ile2(cat) compare
HEPCGN_12935 ubiE -3.3 -2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_20905 guaA -3.2 -6.9 glutamine-hydrolyzing GMP synthase compare
HEPCGN_01120 seqA -3.2 -2.2 replication initiation negative regulator SeqA compare
HEPCGN_07985 gmhB -3.1 -4.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_08460 acnB -3.0 -5.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_15945 dam -3.0 -2.9 adenine-specific DNA-methyltransferase compare
HEPCGN_16670 degS -2.9 -2.0 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_18630 tkt -2.9 -5.5 transketolase compare
HEPCGN_01450 tolQ -2.9 -6.9 Tol-Pal system protein TolQ compare
HEPCGN_12720 typA -2.9 -12.1 ribosome-dependent GTPase TypA compare
HEPCGN_20250 ratA -2.9 -2.7 type II toxin-antitoxin system toxin RatA compare
HEPCGN_19505 mazE -2.8 -2.0 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_18130 neuE -2.8 -3.2 polysialic acid biosynthesis protein compare
HEPCGN_06935 lon_P403L -2.8 -6.4 Lon protease compare
HEPCGN_19900 recA -2.8 -4.9 recombinase RecA compare
HEPCGN_21370 ptsI -2.7 -6.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_18115 neuB -2.7 -3.1 N-acylneuraminate-9-phosphate synthase compare
HEPCGN_22940 ftsK -2.6 -6.9 DNA translocase FtsK compare
HEPCGN_13100 corA -2.6 -5.2 magnesium/cobalt transporter CorA compare
HEPCGN_10565 epmA -2.6 -4.3 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_18110 neuD -2.6 -3.7 NeuD protein involved in sialic acid synthesis compare
HEPCGN_19255 rppH -2.5 -2.4 RNA pyrophosphohydrolase compare
HEPCGN_02900 -2.5 -1.3 Type I toxin-antitoxin system Ibs family toxin compare
HEPCGN_04695 ruvB -2.5 -1.6 Holliday junction branch migration DNA helicase RuvB compare
HEPCGN_18155 kpsD -2.5 -10.0 Polysialic acid transport protein precursor compare
HEPCGN_10460 purA -2.5 -7.8 adenylosuccinate synthase compare
HEPCGN_25595 -2.4 -5.0 type I DNA topoisomerase compare
HEPCGN_14490 waaO -2.4 -5.5 lipopolysaccharide 3-alpha-galactosyltransferase compare
HEPCGN_18165 kpsF -2.4 -3.1 Polysialic acid capsule expression protein compare
HEPCGN_22045 nuoA -2.3 -3.8 NADH-quinone oxidoreductase subunit NuoA compare
HEPCGN_20860 bamB -2.3 -5.8 outer membrane protein assembly factor BamB compare
HEPCGN_18120 neuA -2.3 -1.9 N-acylneuraminate cytidylyltransferase compare
HEPCGN_18145 kpsC -2.3 -9.2 Capsule polysaccharide export protein compare
HEPCGN_21875 truA -2.3 -3.7 aspartate-semialdehyde dehydrogenase compare
HEPCGN_18135 -2.3 -6.0 poly-alpha-2,8 sialosyl sialyltransferase compare
HEPCGN_13550 atpC -2.2 -3.2 F0F1 ATP synthase subunit epsilon compare
HEPCGN_14520 rfaJ -2.2 -3.3 UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase compare
HEPCGN_26765 rrrD -2.2 -2.1 glycoside hydrolase compare
HEPCGN_20125 -2.1 -1.3 hypothetical protein compare
HEPCGN_10620 epmB -2.1 -8.2 EF-P beta-lysylation protein EpmB compare
HEPCGN_01315 sucC -2.1 -3.6 ADP-forming succinate--CoA ligase subunit beta compare
HEPCGN_08480 aceE -2.1 -5.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_13600 pstA -2.1 -2.2 phosphate ABC transporter permease PstA compare
HEPCGN_18580 gshB -2.1 -7.0 glutathione synthase compare
HEPCGN_11605 ubiC -2.1 -2.1 chorismate lyase compare
HEPCGN_12560 frvA -2.0 -1.0 PTS fructose transporter subunit IIA compare
HEPCGN_01455 tolR -2.0 -3.2 colicin uptake protein TolR compare
HEPCGN_19305 recB -2.0 -4.8 exodeoxyribonuclease V subunit beta compare
HEPCGN_17025 yrbN -2.0 -3.7 Uncharacterized protein YrbN compare
HEPCGN_17735 qseC -2.0 -6.3 two-component system sensor histidine kinase QseC compare
HEPCGN_01465 tolB -2.0 -4.3 Tol-Pal system protein TolB compare
HEPCGN_12340 metL -1.9 -8.5 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_23890 plsX -1.9 -4.9 phosphate acyltransferase PlsX compare
HEPCGN_06945 clpX -1.9 -6.9 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_01460 tolA -1.9 -3.8 cell envelope integrity protein TolA compare
HEPCGN_21720 Arg_trna -1.9 -2.6 tRNA-Arg(cct) compare
HEPCGN_20780 hscA -1.8 -3.0 Fe-S protein assembly chaperone HscA compare
HEPCGN_12350 metJ -1.8 -1.4 met regulon transcriptional regulator MetJ compare
HEPCGN_18140 kpsS -1.8 -7.7 Capsule polysaccharide export protein compare
HEPCGN_01320 sucD -1.8 -4.1 succinate--CoA ligase subunit alpha compare
HEPCGN_20965 ppk1 -1.8 -8.8 polyphosphate kinase 1 compare
HEPCGN_04865 prc -1.8 -7.9 carboxy terminal-processing peptidase compare
HEPCGN_15950 rpe -1.8 -2.4 ribulose-phosphate 3-epimerase compare
HEPCGN_19290 ppdC -1.8 -2.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
HEPCGN_20655 glyA -1.8 -2.8 serine hydroxymethyltransferase compare
HEPCGN_25325 -1.8 -1.5 SAR-endolysin compare
HEPCGN_04860 proQ -1.7 -3.1 RNA chaperone ProQ compare
HEPCGN_18125 neuC -1.7 -6.3 UDP-N-acetylglucosamine 2-epimerase compare
HEPCGN_13675 tnaC -1.7 -1.7 tryptophanase leader peptide compare
HEPCGN_13260 rffC -1.7 -3.8 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
HEPCGN_18160 kpsE -1.7 -5.7 Capsule polysaccharide export inner-membrane protein compare
HEPCGN_20255 rnfH -1.7 -3.8 RnfH family protein compare
HEPCGN_01285 sdhC -1.7 -5.0 succinate dehydrogenase cytochrome b556 subunit compare
HEPCGN_03695 -1.7 -1.0 Uncharacterized protein YmfE compare
HEPCGN_12210 oxyR -1.7 -9.2 DNA-binding transcriptional regulator OxyR compare
HEPCGN_20765 iscU -1.7 -1.2 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_19295 recC -1.7 -5.3 exodeoxyribonuclease V subunit gamma compare
HEPCGN_20900 guaB -1.7 -3.7 IMP dehydrogenase compare
HEPCGN_14570 envC -1.6 -4.7 murein hydrolase activator EnvC compare
HEPCGN_15205 hdeA -1.6 -0.8 acid-activated periplasmic chaperone HdeA compare
HEPCGN_20545 lepA -1.6 -6.2 translation elongation factor 4 compare
HEPCGN_22060 nuoE -1.6 -3.1 NADH-quinone oxidoreductase subunit NuoE compare
HEPCGN_25045 rssB -1.6 -7.3 two-component system response regulator RssB compare
HEPCGN_15315 gorA -1.6 -5.7 glutathione-disulfide reductase compare
HEPCGN_01470 pal -1.6 -2.7 peptidoglycan-associated lipoprotein Pal compare
HEPCGN_13590 pstS -1.6 -4.2 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_02305 -1.6 -1.9 hypothetical protein compare
HEPCGN_11980 hupA -1.6 -2.3 DNA-binding protein HU-alpha compare
HEPCGN_08825 rsmA -1.5 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
HEPCGN_18610 speA -1.5 -7.8 biosynthetic arginine decarboxylase compare
HEPCGN_16770 arcB -1.5 -2.9 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_00215 -1.5 -1.6 DNA-binding protein compare
HEPCGN_07060 pgpA -1.5 -2.2 phosphatidylglycerophosphatase A compare
HEPCGN_03895 -1.5 -1.3 hypothetical protein compare
HEPCGN_19995 ygaZ -1.5 -5.8 L-valine exporter subunit YgaZ compare
HEPCGN_18860 xerD -1.5 -3.3 site-specific tyrosine recombinase XerD compare
HEPCGN_04675 ruvC -1.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_12110 tuf -1.5 -0.9 elongation factor Tu compare
HEPCGN_14645 mtlR -1.5 -5.8 mannitol operon repressor MtlR compare
HEPCGN_21275 amiA -1.5 -4.5 N-acetylmuramoyl-L-alanine amidase AmiA compare
HEPCGN_18150 kpsU -1.5 -4.9 3-deoxy-manno-octulosonate cytidylyltransferase compare
HEPCGN_05130 yeaC -1.4 -1.2 Uncharacterized protein YeaC compare
HEPCGN_13595 pstC -1.4 -2.3 phosphate ABC transporter permease PstC compare
HEPCGN_01065 nagA -1.4 -4.1 N-acetylglucosamine-6-phosphate deacetylase compare
HEPCGN_25140 tonB -1.4 -1.4 TonB system transport protein TonB compare
HEPCGN_13125 xerC -1.4 -2.2 tyrosine recombinase XerC compare
HEPCGN_05800 grxD -1.4 -3.8 monothiol glutaredoxin 4 compare
HEPCGN_15800 -1.4 -5.4 NfuA family Fe-S biogenesis protein compare
HEPCGN_09795 -1.4 -1.6 KpLE2 phage-like element compare
HEPCGN_18105 kpsT -1.4 -2.4 Polysialic acid transport ATP-binding protein compare
HEPCGN_22050 nuoB -1.3 -4.0 NADH-quinone oxidoreductase subunit NuoB compare
HEPCGN_03930 hprS -1.3 -1.9 two-component system sensor histidine kinase HprS compare
HEPCGN_19985 emrR -1.3 -1.8 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
HEPCGN_14475 rfaQ -1.3 -4.2 lipopolysaccharide core heptosyltransferase RfaQ compare
HEPCGN_01060 nagC -1.3 -4.2 DNA-binding transcriptional regulator NagC compare
HEPCGN_25055 hns -1.3 -1.0 DNA-binding transcriptional regulator H-NS compare
HEPCGN_16345 trkA -1.3 -3.4 Trk system potassium transporter TrkA compare
HEPCGN_13500 mnmG -1.3 -4.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_21870 usg -1.3 -2.6 aspartate-semialdehyde dehydrogenase compare
HEPCGN_03765 -1.3 -2.1 lysis protein compare
HEPCGN_26305 yncG -1.3 -2.9 Uncharacterized GST-like protein YncG compare
HEPCGN_05915 rsxE -1.3 -3.3 electron transport complex subunit RsxE compare
HEPCGN_18100 kpsM -1.3 -4.7 Polysialic acid transport protein compare
HEPCGN_01295 sdhA -1.3 -5.1 succinate dehydrogenase flavoprotein subunit compare
HEPCGN_26440 sra -1.3 -2.6 stationary-phase-induced ribosome-associated protein compare
HEPCGN_01300 sdhB -1.3 -5.2 succinate dehydrogenase iron-sulfur subunit SdhB compare
HEPCGN_04740 zwf -1.3 -6.0 glucose-6-phosphate dehydrogenase compare
HEPCGN_05925 rsxD -1.3 -4.2 electron transport complex subunit RsxD compare
HEPCGN_02310 -1.3 -1.3 DUF4752 domain-containing protein compare
HEPCGN_13255 rffA -1.3 -7.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
HEPCGN_08835 apaH -1.3 -5.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_01290 sdhD -1.2 -4.1 succinate dehydrogenase membrane anchor subunit compare
HEPCGN_20185 ygaP -1.2 -1.1 thiosulfate sulfurtransferase YgaP compare
HEPCGN_10840 tetR(B -1.2 -1.9 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_19990 ygaH -1.2 -2.4 L-valine transporter subunit YgaH compare
HEPCGN_15535 ftsE -1.2 -3.6 cell division ATP-binding protein FtsE compare
HEPCGN_16855 mlaE -1.2 -6.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
HEPCGN_06950 clpP -1.2 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_18410 prsX -1.2 -4.5 HTH-type transcriptional regulator PrsX compare
HEPCGN_24015 mfd -1.2 -6.6 transcription-repair coupling factor compare
HEPCGN_17780 ftsP -1.2 -6.9 cell division protein FtsP compare
HEPCGN_08665 cra -1.2 -3.6 catabolite repressor/activator compare
HEPCGN_25670 yciZ -1.2 -1.5 UPF0509 protein YciZ compare
HEPCGN_23690 mdoG -1.2 -4.3 glucans biosynthesis protein MdoG compare
HEPCGN_11570 zur -1.2 -6.5 zinc uptake transcriptional repressor Zur compare
HEPCGN_22095 nuoL -1.2 -3.7 NADH-quinone oxidoreductase subunit L compare
HEPCGN_15745 glpD -1.2 -3.7 glycerol-3-phosphate dehydrogenase compare
HEPCGN_08755 -1.1 -1.7 hypothetical protein compare
HEPCGN_00570 nrfB -1.1 -1.4 phage adsorption protein NrfB compare
HEPCGN_23865 rluC -1.1 -5.1 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
HEPCGN_22080 nuoI -1.1 -3.0 NADH-quinone oxidoreductase subunit NuoI compare
HEPCGN_05580 aroD -1.1 -2.2 3-dehydroquinate dehydratase compare
HEPCGN_05940 rsxA -1.1 -2.1 electron transport complex subunit RsxA compare
HEPCGN_03415 -1.1 -1.0 DDE-Tnp-IS66-C domain-containing protein compare
HEPCGN_20630 qseE -1.1 -7.3 two component system sensor histidine kinase QseE/GlrK compare
HEPCGN_13245 rffT -1.1 -5.0 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
HEPCGN_06785 apt -1.1 -1.4 adenine phosphoribosyltransferase compare
HEPCGN_19955 gshA -1.1 -6.1 glutamate--cysteine ligase compare
HEPCGN_12475 pfkA -1.1 -3.3 6-phosphofructokinase compare
HEPCGN_00810 citX -1.1 -0.8 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
HEPCGN_24275 -1.1 -1.4 hypothetical protein compare
HEPCGN_18855 fldB -1.1 -3.6 flavodoxin FldB compare
HEPCGN_26865 lacF -1.1 -1.3 PTS lactose/cellobiose transporter subunit IIA compare
HEPCGN_25125 clsA -1.0 -3.4 cardiolipin synthase ClsA compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms