Experiment set3S578 for Escherichia coli ECOR38

Compare to:

Bas05

200 most important genes:

  gene name fitness t score description  
HEPCGN_08815 surA -5.4 -3.8 peptidylprolyl isomerase SurA compare
HEPCGN_16680 zapG -5.1 -3.5 Z-ring associated protein ZapG compare
HEPCGN_02315 -5.0 -1.8 MarR family transcriptional regulator compare
HEPCGN_13320 rep -4.2 -2.9 DNA helicase Rep compare
HEPCGN_02855 -4.0 -1.4 type II toxin-antitoxin system ParD family antitoxin compare
HEPCGN_01010 ubiF -3.5 -2.1 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_13290 wecA -3.3 -5.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_14540 rfaF -3.2 -2.9 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_26060 ynbE -3.1 -2.8 YdbH family protein compare
HEPCGN_20125 -2.9 -1.5 hypothetical protein compare
HEPCGN_16670 degS -2.9 -2.0 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_21995 pta -2.8 -5.4 phosphate acetyltransferase compare
HEPCGN_23880 yceD -2.7 -3.3 23S rRNA accumulation protein YceD compare
HEPCGN_21875 truA -2.7 -3.7 aspartate-semialdehyde dehydrogenase compare
HEPCGN_20765 iscU -2.7 -1.3 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_22185 arnT -2.5 -2.5 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
HEPCGN_00885 lipB -2.5 -3.4 lipoyl(octanoyl) transferase LipB compare
HEPCGN_01120 seqA -2.5 -2.4 replication initiation negative regulator SeqA compare
HEPCGN_24800 ldcA -2.5 -3.2 muramoyltetrapeptide carboxypeptidase compare
HEPCGN_03330 yeeS -2.5 -1.7 UPF0758 protein YeeS compare
HEPCGN_22940 ftsK -2.5 -4.3 DNA translocase FtsK compare
HEPCGN_25600 cysB -2.5 -2.9 HTH-type transcriptional regulator CysB compare
HEPCGN_08480 aceE -2.5 -5.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_22000 ackA -2.4 -3.6 acetate kinase compare
HEPCGN_02305 -2.4 -2.8 hypothetical protein compare
HEPCGN_15945 dam -2.3 -3.5 adenine-specific DNA-methyltransferase compare
HEPCGN_04695 ruvB -2.3 -3.0 Holliday junction branch migration DNA helicase RuvB compare
HEPCGN_19900 recA -2.2 -3.5 recombinase RecA compare
HEPCGN_04675 ruvC -2.2 -2.2 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_19290 ppdC -2.2 -3.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
HEPCGN_01305 sucA -2.2 -5.7 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_12935 ubiE -2.1 -1.8 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_03670 -2.1 -2.3 Putative bacterial toxin ydaT compare
HEPCGN_19505 mazE -2.0 -2.9 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_00920 rsfS -2.0 -1.2 ribosome silencing factor compare
HEPCGN_19295 recC -2.0 -6.9 exodeoxyribonuclease V subunit gamma compare
HEPCGN_08460 acnB -2.0 -5.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_24740 fadR -2.0 -4.5 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_01450 tolQ -1.9 -3.7 Tol-Pal system protein TolQ compare
HEPCGN_12895 rfaH -1.9 -4.5 transcription/translation regulatory transformer protein RfaH compare
HEPCGN_21370 ptsI -1.8 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_19305 recB -1.8 -4.9 exodeoxyribonuclease V subunit beta compare
HEPCGN_17025 yrbN -1.8 -2.4 Uncharacterized protein YrbN compare
HEPCGN_13500 mnmG -1.7 -7.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_13250 wzxE -1.7 -5.8 lipid III flippase WzxE compare
HEPCGN_18630 tkt -1.5 -3.6 transketolase compare
HEPCGN_20525 rseA -1.5 -2.0 anti-sigma-E factor RseA compare
HEPCGN_08835 apaH -1.5 -5.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_12340 metL -1.5 -6.3 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_03895 -1.5 -1.2 hypothetical protein compare
HEPCGN_07985 gmhB -1.4 -4.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_04030 fliO -1.4 -1.1 flagellar type III secretion system protein FliO compare
HEPCGN_01455 tolR -1.4 -2.4 colicin uptake protein TolR compare
HEPCGN_13550 atpC -1.4 -2.2 F0F1 ATP synthase subunit epsilon compare
HEPCGN_13675 tnaC -1.4 -1.0 tryptophanase leader peptide compare
HEPCGN_10490 miaA -1.4 -3.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HEPCGN_17970 -1.4 -2.0 phosphopantetheine attachment site family protein compare
HEPCGN_00215 -1.4 -1.6 DNA-binding protein compare
HEPCGN_04685 yobI -1.3 -0.9 Uncharacterized protein YobI compare
HEPCGN_25055 hns -1.3 -1.2 DNA-binding transcriptional regulator H-NS compare
HEPCGN_10095 treC -1.3 -4.3 alpha,alpha-phosphotrehalase compare
HEPCGN_13100 corA -1.3 -3.4 magnesium/cobalt transporter CorA compare
HEPCGN_20250 ratA -1.3 -1.1 type II toxin-antitoxin system toxin RatA compare
HEPCGN_10185 chpS -1.3 -1.2 type II toxin-antitoxin system antitoxin ChpS compare
HEPCGN_10880 -1.3 -1.5 Truncated transposase compare
HEPCGN_20780 hscA -1.3 -2.2 Fe-S protein assembly chaperone HscA compare
HEPCGN_16770 arcB -1.3 -2.2 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_08710 leuD -1.2 -2.3 3-isopropylmalate dehydratase small subunit compare
HEPCGN_25595 -1.2 -2.7 type I DNA topoisomerase compare
HEPCGN_00915 rlmH -1.2 -1.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
HEPCGN_03765 -1.2 -1.9 lysis protein compare
HEPCGN_04720 lpxM -1.2 -2.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_22930 trxB -1.2 -1.5 thioredoxin-disulfide reductase compare
HEPCGN_16325 yhdN -1.2 -1.5 Uncharacterized protein YhdN compare
HEPCGN_20585 shoB -1.2 -1.0 Small toxic protein ShoB compare
HEPCGN_00170 -1.2 -4.0 peptidyl-arginine deiminase compare
HEPCGN_08825 rsmA -1.1 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
HEPCGN_25325 -1.1 -1.3 SAR-endolysin compare
HEPCGN_10840 tetR(B -1.1 -3.5 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_13605 pstB -1.1 -1.1 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_15930 aroK -1.1 -0.8 shikimate kinase AroK compare
HEPCGN_02985 -1.1 -0.6 transcriptional regulator compare
HEPCGN_20770 iscA -1.1 -1.3 iron-sulfur cluster assembly protein IscA compare
HEPCGN_12790 -1.1 -0.6 hypothetical protein compare
HEPCGN_27235 -1.0 -1.3 plasmid stability protein compare
HEPCGN_08475 aceF -1.0 -1.2 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_04595 flhe -1.0 -1.3 flagellar protein FlhE compare
HEPCGN_24160 -1.0 -1.6 phage head closure protein compare
HEPCGN_13680 -1.0 -1.5 tRNA modification GTPase MnmE compare
HEPCGN_13595 pstC -1.0 -2.2 phosphate ABC transporter permease PstC compare
HEPCGN_07060 pgpA -1.0 -2.5 phosphatidylglycerophosphatase A compare
HEPCGN_10835 arsR -1.0 -2.6 transcriptional regulator compare
HEPCGN_18465 yggX -1.0 -2.9 oxidative damage protection protein compare
HEPCGN_06205 -1.0 -0.9 DUF5051 domain-containing protein compare
HEPCGN_04750 kdgA -1.0 -1.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HEPCGN_20860 bamB -1.0 -2.5 outer membrane protein assembly factor BamB compare
HEPCGN_26580 -1.0 -1.4 fimbria/pilus periplasmic chaperone compare
HEPCGN_14495 rfaJ -1.0 -2.5 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_22090 nuoK -1.0 -1.1 NADH-quinone oxidoreductase subunit NuoK compare
HEPCGN_17030 deaD -1.0 -2.4 ATP-dependent RNA helicase DeaD compare
HEPCGN_03310 yeeW -1.0 -1.2 Protein YeeW compare
HEPCGN_17060 yhbS -1.0 -2.7 Uncharacterized N-acetyltransferase YhbS compare
HEPCGN_25140 tonB -1.0 -1.7 TonB system transport protein TonB compare
HEPCGN_24695 ycgN -1.0 -1.9 YcgN family cysteine cluster protein compare
HEPCGN_11075 -0.9 -0.9 Phage-related protein compare
HEPCGN_14530 -0.9 -1.2 O-antigen ligase domain-containing protein compare
HEPCGN_03690 -0.9 -2.0 Tellurite resistance protein TehB compare
HEPCGN_06785 apt -0.9 -1.2 adenine phosphoribosyltransferase compare
HEPCGN_08665 cra -0.9 -3.1 catabolite repressor/activator compare
HEPCGN_19955 gshA -0.9 -4.2 glutamate--cysteine ligase compare
HEPCGN_23915 fabF -0.9 -2.9 beta-ketoacyl-ACP synthase II compare
HEPCGN_09795 -0.9 -1.9 KpLE2 phage-like element compare
HEPCGN_06935 lon_P403L -0.9 -2.8 Lon protease compare
HEPCGN_16920 greA -0.9 -0.8 transcription elongation factor GreA compare
HEPCGN_01200 ybgI -0.9 -1.9 radiation resistance protein YbgI compare
HEPCGN_13115 uvrD -0.9 -4.7 DNA helicase II compare
HEPCGN_02810 gatB -0.9 -1.0 PTS galactitol transporter subunit IIB compare
HEPCGN_05475 btuD -0.9 -1.5 vitamin B12 ABC transporter ATP-binding protein BtuD compare
HEPCGN_12350 metJ -0.9 -1.1 met regulon transcriptional regulator MetJ compare
HEPCGN_26185 rimL -0.9 -1.6 50S ribosomal protein L7/L12-serine acetyltransferase compare
HEPCGN_02345 -0.9 -2.1 hypothetical protein compare
HEPCGN_10120 cybC -0.9 -1.0 cytochrome b562 compare
HEPCGN_12110 tuf -0.9 -0.6 elongation factor Tu compare
HEPCGN_12475 pfkA -0.9 -2.5 6-phosphofructokinase compare
HEPCGN_27390 -0.9 -3.9 transcriptional regulator compare
HEPCGN_04835 yebV -0.8 -1.1 Uncharacterized protein YebV compare
HEPCGN_20825 ndk -0.8 -3.3 nucleoside-diphosphate kinase compare
HEPCGN_01100 uof -0.8 -0.7 fur leader peptide compare
HEPCGN_00770 ahpC -0.8 -4.1 alkyl hydroperoxide reductase subunit C compare
HEPCGN_03855 -0.8 -1.7 phage tail protein compare
HEPCGN_00595 cusF -0.8 -0.9 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF compare
HEPCGN_06385 -0.8 -1.7 DNA-packaging protein compare
HEPCGN_25695 acrR -0.8 -1.8 TetR family transcriptional regulator compare
HEPCGN_24520 -0.8 -2.2 lytic murein transglycosylase compare
HEPCGN_18860 xerD -0.8 -2.2 site-specific tyrosine recombinase XerD compare
HEPCGN_21585 ypdK -0.8 -1.7 membrane protein YpdK compare
HEPCGN_10565 epmA -0.8 -2.2 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_05770 purR -0.8 -2.6 HTH-type transcriptional repressor PurR compare
HEPCGN_26840 marR -0.8 -1.9 multiple antibiotic resistance transcriptional regulator MarR compare
HEPCGN_00255 -0.8 -0.5 hypothetical protein compare
HEPCGN_12720 typA -0.8 -5.1 ribosome-dependent GTPase TypA compare
HEPCGN_03695 -0.8 -1.0 Uncharacterized protein YmfE compare
HEPCGN_06945 clpX -0.8 -2.9 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_02940 terY -0.8 -2.3 Uncharacterized protein YegL compare
HEPCGN_05580 aroD -0.8 -2.1 3-dehydroquinate dehydratase compare
HEPCGN_07085 nrdR -0.8 -1.5 transcriptional regulator NrdR compare
HEPCGN_08840 -0.8 -1.4 Toxin CcdB compare
HEPCGN_22220 nudI -0.8 -1.4 nucleoside triphosphatase NudI compare
HEPCGN_23620 ycdY -0.8 -2.3 molecular chaperone YcdY compare
HEPCGN_24965 chaC -0.8 -1.7 glutathione-specific gamma-glutamylcyclotransferase compare
HEPCGN_18670 cysA -0.8 -1.7 ABC transporter ATP-binding protein compare
HEPCGN_04405 -0.8 -0.6 DUF4754 domain-containing protein compare
HEPCGN_14480 rfaG -0.8 -3.3 Lipopolysaccharide core biosynthesis protein RfaG compare
HEPCGN_05565 araC -0.7 -1.0 AraC family transcriptional regulator compare
HEPCGN_00275 -0.7 -1.7 acetyltransferase compare
HEPCGN_22045 nuoA -0.7 -1.6 NADH-quinone oxidoreductase subunit NuoA compare
HEPCGN_01685 moaD -0.7 -1.5 molybdopterin synthase sulfur carrier subunit compare
HEPCGN_24345 -0.7 -3.1 Protein TonB compare
HEPCGN_22605 yejL -0.7 -1.2 UPF0352 protein YejL compare
HEPCGN_15520 yhhL -0.7 -1.2 DUF1145 domain-containing protein compare
HEPCGN_25135 yciI -0.7 -2.0 YciI family protein compare
HEPCGN_15800 -0.7 -3.5 NfuA family Fe-S biogenesis protein compare
HEPCGN_09005 -0.7 -2.3 fimbrial family protein compare
HEPCGN_19785 hycF -0.7 -1.7 formate hydrogenlyase subunit HycF compare
HEPCGN_00810 citX -0.7 -0.9 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
HEPCGN_15280 -0.7 -1.5 transcriptional regulator compare
HEPCGN_06770 recR -0.7 -1.6 recombination mediator RecR compare
HEPCGN_14320 frwB -0.7 -1.4 PTS fructose transporter subunit IIB compare
HEPCGN_14485 rfaP -0.7 -2.9 lipopolysaccharide core heptose(I) kinase RfaP compare
HEPCGN_05265 xthA -0.7 -1.5 exodeoxyribonuclease III compare
HEPCGN_16130 yheO -0.7 -2.4 Uncharacterized protein YheO compare
HEPCGN_07125 parD -0.7 -1.7 Antitoxin ParD compare
HEPCGN_25525 trpCF -0.7 -3.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HEPCGN_02050 -0.7 -1.1 DUF1418 domain-containing protein compare
HEPCGN_12115 Thr_trna -0.7 -0.8 tRNA-Thr(ggt) compare
HEPCGN_16655 argR -0.7 -2.2 transcriptional regulator ArgR compare
HEPCGN_14520 rfaJ -0.7 -1.4 UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase compare
HEPCGN_07860 dinJ -0.7 -1.2 type II toxin-antitoxin system antitoxin DinJ compare
HEPCGN_10610 ecnA -0.7 -0.9 lipoprotein antitoxin entericidin A compare
HEPCGN_12195 yijD -0.7 -1.9 YijD family membrane protein compare
HEPCGN_25680 rnb -0.7 -2.4 exoribonuclease II compare
HEPCGN_12385 hslU -0.7 -2.4 HslU--HslV peptidase ATPase subunit compare
HEPCGN_25970 smrA -0.7 -1.5 DNA endonuclease SmrA compare
HEPCGN_04610 cutC -0.7 -0.9 copper homeostasis protein CutC compare
HEPCGN_05660 sufE -0.7 -0.9 cysteine desulfuration protein SufE compare
HEPCGN_12860 trkH -0.7 -3.1 Trk system potassium transporter TrkH compare
HEPCGN_10790 -0.7 -2.6 IS2 ORF2 compare
HEPCGN_14490 waaO -0.7 -2.1 lipopolysaccharide 3-alpha-galactosyltransferase compare
HEPCGN_06950 clpP -0.7 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HEPCGN_11685 pgi -0.7 -3.4 glucose-6-phosphate isomerase compare
HEPCGN_24670 minC -0.7 -1.8 septum site-determining protein MinC compare
HEPCGN_22070 nuoG -0.7 -2.8 NADH-quinone oxidoreductase subunit NuoG compare
HEPCGN_25050 galU -0.7 -2.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
HEPCGN_06325 ynfS -0.7 -1.3 Protein YnfS compare
HEPCGN_01300 sdhB -0.7 -2.3 succinate dehydrogenase iron-sulfur subunit SdhB compare
HEPCGN_20855 yfgM -0.6 -1.3 ancillary SecYEG translocon subunit YfgM compare
HEPCGN_16500 fis -0.6 -0.9 DNA-binding transcriptional regulator Fis compare
HEPCGN_10365 ulaD -0.6 -1.7 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
HEPCGN_19255 rppH -0.6 -1.1 RNA pyrophosphohydrolase compare
HEPCGN_06115 mlc -0.6 -2.7 DNA-binding transcriptional repressor Mlc compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms