Experiment set3S571 for Escherichia coli HS(pFamp)R (ATCC 700891)

Compare to:

Phage Lil 3

200 most important genes:

  gene name fitness t score description  
OHPLBJKB_03208 -4.1 -2.8 hypothetical protein compare
OHPLBJKB_02995 -3.3 -3.2 Succinate dehydrogenase cytochrome b556 subunit compare
OHPLBJKB_02410 -3.1 -3.6 DNA topoisomerase 1 compare
OHPLBJKB_04130 -2.9 -1.7 hypothetical protein compare
OHPLBJKB_02213 -2.9 -2.8 Protein FimF compare
OHPLBJKB_03501 -2.9 -5.1 Periplasmic serine endoprotease DegP compare
OHPLBJKB_00438 -2.8 -2.8 hypothetical protein compare
OHPLBJKB_00071 -2.7 -1.9 Lipopolysaccharide core biosynthesis protein RfaG compare
OHPLBJKB_02098 -2.7 -2.6 Electron transport complex subunit RsxB compare
OHPLBJKB_02306 -2.6 -2.6 Inner membrane protein YnbA compare
OHPLBJKB_02780 -2.5 -1.7 Thioredoxin reductase compare
OHPLBJKB_00498 -2.5 -1.7 RNA polymerase sigma-54 factor compare
OHPLBJKB_01426 -2.5 -1.7 NADH-quinone oxidoreductase subunit J compare
OHPLBJKB_02578 -2.4 -2.3 Large ribosomal RNA subunit accumulation protein YceD compare
OHPLBJKB_01437 -2.4 -1.6 Protease ElaD compare
OHPLBJKB_01156 -2.4 -2.8 Serine hydroxymethyltransferase compare
OHPLBJKB_01358 -2.1 -2.7 tRNA-Arg compare
OHPLBJKB_02448 -2.1 -1.5 DNA-binding protein H-NS compare
OHPLBJKB_03543 -2.0 -1.4 Aconitate hydratase B compare
OHPLBJKB_00078 -2.0 -3.0 O-antigen ligase compare
OHPLBJKB_01616 -2.0 -2.1 PTS system galactitol-specific EIIA component compare
OHPLBJKB_00193 -1.9 -1.7 Acid stress chaperone HdeA compare
OHPLBJKB_02915 -1.9 -2.3 N-glycosidase YbiA compare
OHPLBJKB_02664 -1.9 -2.5 putative protein YccJ compare
OHPLBJKB_03442 -1.9 -2.2 hypothetical protein compare
OHPLBJKB_01702 -1.9 -3.1 hypothetical protein compare
OHPLBJKB_03951 -1.9 -3.4 Aminoalkylphosphonate N-acetyltransferase compare
OHPLBJKB_03117 -1.8 -2.8 Ferric enterobactin transport system permease protein FepG compare
OHPLBJKB_01386 -1.8 -2.7 USG-1 protein compare
OHPLBJKB_01035 -1.8 -2.4 Protein RecA compare
OHPLBJKB_04235 -1.7 -1.2 Magnesium transport protein CorA compare
OHPLBJKB_04273 -1.7 -1.2 Thioredoxin 1 compare
OHPLBJKB_02192 -1.7 -2.2 hypothetical protein compare
OHPLBJKB_03032 -1.7 -2.0 Ferric uptake regulation protein compare
OHPLBJKB_01641 -1.6 -1.9 dCTP deaminase compare
OHPLBJKB_02856 -1.6 -1.4 hypothetical protein compare
OHPLBJKB_00591 -1.6 -1.6 hypothetical protein compare
OHPLBJKB_02456 -1.6 -1.9 Respiratory nitrate reductase 1 gamma chain compare
OHPLBJKB_02247 -1.5 -2.8 hypothetical protein compare
OHPLBJKB_01785 -1.5 -2.2 hypothetical protein compare
OHPLBJKB_04139 -1.5 -4.0 Sensor histidine kinase CpxA compare
OHPLBJKB_03643 -1.5 -1.9 Toxic protein HokC compare
OHPLBJKB_02666 -1.5 -3.2 hypothetical protein compare
OHPLBJKB_02351 -1.5 -2.3 Low conductance mechanosensitive channel YnaI compare
OHPLBJKB_02155 -1.5 -1.9 hypothetical protein compare
OHPLBJKB_01425 -1.4 -2.3 NADH-quinone oxidoreductase subunit I compare
OHPLBJKB_03847 -1.4 -2.5 Ascorbate-specific PTS system EIIA component compare
OHPLBJKB_00681 -1.4 -2.3 Antitoxin MqsA compare
OHPLBJKB_01131 -1.4 -6.3 ATP-dependent RNA helicase SrmB compare
OHPLBJKB_01448 -1.4 -3.5 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
OHPLBJKB_00059 -1.4 -3.3 Ribonuclease PH compare
OHPLBJKB_01143 -1.4 -2.1 'Pyridoxine 5'-phosphate synthase' transl_table=11 compare
OHPLBJKB_01059 -1.4 -1.8 Glutaredoxin-like protein NrdH compare
OHPLBJKB_01826 -1.4 -2.1 hypothetical protein compare
OHPLBJKB_02650 -1.4 -2.1 Ferrous iron permease EfeU compare
OHPLBJKB_02461 -1.4 -3.0 hypothetical protein compare
OHPLBJKB_04247 -1.4 -3.8 Adenylate cyclase compare
OHPLBJKB_04011 -1.4 -1.4 hypothetical protein compare
OHPLBJKB_03413 -1.4 -1.4 Antitoxin DinJ compare
OHPLBJKB_01782 -1.4 -0.9 Flagellar protein FliO compare
OHPLBJKB_03236 -1.4 -5.1 ATP-dependent Clp protease proteolytic subunit compare
OHPLBJKB_02607 -1.4 -1.2 putative protein YceO compare
OHPLBJKB_01649 -1.3 -5.0 hypothetical protein compare
OHPLBJKB_02990 -1.3 -1.4 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
OHPLBJKB_01424 -1.3 -2.4 NADH-quinone oxidoreductase subunit H compare
OHPLBJKB_03686 -1.3 -1.0 Osmotically-inducible protein Y compare
OHPLBJKB_03995 -1.3 -2.9 hypothetical protein compare
OHPLBJKB_01967 -1.3 -1.9 Putative NAD(P)H nitroreductase YdjA compare
OHPLBJKB_00771 -1.3 -3.1 Glutathione synthetase compare
OHPLBJKB_01420 -1.3 -3.0 NADH-quinone oxidoreductase subunit C/D compare
OHPLBJKB_01135 -1.3 -2.2 Anti-sigma-E factor RseA compare
OHPLBJKB_03182 -1.3 -3.3 putative protein YbbN compare
OHPLBJKB_02987 -1.3 -2.3 Mannosyl-D-glycerate transport/metabolism system repressor MngR compare
OHPLBJKB_03896 -1.3 -5.1 L-lysine 2,3-aminomutase compare
OHPLBJKB_01993 -1.3 -1.6 Osmotically-inducible putative lipoprotein OsmE compare
OHPLBJKB_03030 -1.2 -3.5 putative protein YbfE compare
OHPLBJKB_01387 -1.2 -1.8 tRNA pseudouridine synthase A compare
OHPLBJKB_03791 -1.2 -3.6 2-iminobutanoate/2-iminopropanoate deaminase compare
OHPLBJKB_03885 -1.2 -4.1 Elongation factor P--(R)-beta-lysine ligase compare
OHPLBJKB_04135 -1.2 -3.4 ATP-dependent 6-phosphofructokinase isozyme 1 compare
OHPLBJKB_00366 -1.2 -1.8 Bacterioferritin-associated ferredoxin compare
OHPLBJKB_03466 -1.2 -3.4 tRNA (adenine(37)-N6)-methyltransferase compare
OHPLBJKB_00851 -1.2 -1.6 tRNA-Gly compare
OHPLBJKB_03187 -1.2 -1.2 HTH-type transcriptional regulator CueR compare
OHPLBJKB_04059 -1.2 -0.7 Sulfur carrier protein ThiS compare
OHPLBJKB_01207 -1.2 -2.6 hypothetical protein compare
OHPLBJKB_01138 -1.2 -3.3 Elongation factor 4 compare
OHPLBJKB_00117 -1.2 -1.5 Inner membrane protein YiaW compare
OHPLBJKB_00519 -1.2 -0.9 Transcription elongation factor GreA compare
OHPLBJKB_01548 -1.2 -1.4 Regulatory protein YeiL compare
OHPLBJKB_02778 -1.2 -1.1 DNA translocase FtsK compare
OHPLBJKB_02450 -1.2 -5.4 Regulator of RpoS compare
OHPLBJKB_00355 -1.2 -0.8 Protein SlyX compare
OHPLBJKB_04182 -1.2 -2.9 Glutamine synthetase compare
OHPLBJKB_03642 -1.2 -4.1 Na(+)/H(+) antiporter NhaA compare
OHPLBJKB_00661 -1.2 -1.6 putative protein YqiC compare
OHPLBJKB_03114 -1.2 -2.8 Ferrienterobactin-binding periplasmic protein compare
OHPLBJKB_03235 -1.2 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
OHPLBJKB_00192 -1.1 -1.0 Protein HdeD compare
OHPLBJKB_01938 -1.1 -1.6 hypothetical protein compare
OHPLBJKB_00809 -1.1 -1.9 2-octaprenylphenol hydroxylase compare
OHPLBJKB_02991 -1.1 -1.3 2-oxoglutarate dehydrogenase E1 component compare
OHPLBJKB_00070 -1.1 -4.4 Lipopolysaccharide core heptosyltransferase RfaQ compare
OHPLBJKB_02581 -1.1 -3.4 Ribonuclease E compare
OHPLBJKB_04118 -1.1 -1.6 Cell division protein FtsN compare
OHPLBJKB_02802 -1.1 -2.4 hypothetical protein compare
OHPLBJKB_00077 -1.1 -2.3 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
OHPLBJKB_03605 -1.1 -2.3 Ribosomal RNA small subunit methyltransferase A compare
OHPLBJKB_02349 -1.1 -2.4 Universal stress protein E compare
OHPLBJKB_04295 -1.1 -6.0 HTH-type transcriptional repressor NanR compare
OHPLBJKB_01132 -1.1 -4.2 tRNA1(Val) (adenine(37)-N6)-methyltransferase compare
OHPLBJKB_03461 -1.1 -1.5 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
OHPLBJKB_03383 -1.1 -1.9 hypothetical protein compare
OHPLBJKB_00195 -1.1 -2.0 Protein SapB compare
OHPLBJKB_01430 -1.0 -2.4 NADH-quinone oxidoreductase subunit N compare
OHPLBJKB_02714 -1.0 -1.9 hypothetical protein compare
OHPLBJKB_03362 -1.0 -2.1 HTH-type transcriptional regulator BetI compare
OHPLBJKB_01428 -1.0 -2.9 NADH-quinone oxidoreductase subunit L compare
OHPLBJKB_00653 -1.0 -1.9 Inner membrane protein YqiK compare
OHPLBJKB_03172 -1.0 -1.8 Hydroxypyruvate isomerase compare
OHPLBJKB_00880 -1.0 -1.6 hypothetical protein compare
OHPLBJKB_00448 -1.0 -1.0 putative membrane protein YhdT compare
OHPLBJKB_01419 -1.0 -3.4 NADH-quinone oxidoreductase subunit B compare
OHPLBJKB_00546 -1.0 -3.3 hypothetical protein compare
OHPLBJKB_01275 -1.0 -1.3 Ethanolamine utilization protein EutN compare
OHPLBJKB_02992 -1.0 -2.8 Succinate dehydrogenase iron-sulfur subunit compare
OHPLBJKB_00807 -1.0 -2.2 Xaa-Pro aminopeptidase compare
OHPLBJKB_04230 -1.0 -6.3 Phospholipase A1 compare
OHPLBJKB_01218 -1.0 -1.0 hypothetical protein compare
OHPLBJKB_03214 -1.0 -1.1 Hemolysin expression-modulating protein Hha compare
OHPLBJKB_04314 -1.0 -2.1 ATP synthase protein I compare
OHPLBJKB_00168 -1.0 -1.2 Small toxic polypeptide LdrD compare
OHPLBJKB_03975 -1.0 -2.1 hypothetical protein compare
OHPLBJKB_00210 -1.0 -2.5 Low-affinity inorganic phosphate transporter 1 compare
OHPLBJKB_01496 -1.0 -3.5 FAD:protein FMN transferase compare
OHPLBJKB_01881 -1.0 -1.1 hypothetical protein compare
OHPLBJKB_02300 -1.0 -3.6 Protein YdcF compare
OHPLBJKB_02557 -0.9 -2.4 NADH dehydrogenase compare
OHPLBJKB_01363 -0.9 -1.0 hypothetical protein compare
OHPLBJKB_01422 -0.9 -2.3 NADH-quinone oxidoreductase subunit F compare
OHPLBJKB_02050 -0.9 -2.7 putative ferredoxin-like protein YdhY compare
OHPLBJKB_00131 -0.9 -1.1 Hydrogenase-4 component A compare
OHPLBJKB_04367 -0.9 -1.3 hypothetical protein compare
OHPLBJKB_02048 -0.9 -2.4 Pyruvate kinase I compare
OHPLBJKB_00538 -0.9 -2.8 ATP-dependent RNA helicase DeaD compare
OHPLBJKB_03713 -0.9 -2.3 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
OHPLBJKB_00744 -0.9 -1.0 hypothetical protein compare
OHPLBJKB_00074 -0.9 -1.7 hypothetical protein compare
OHPLBJKB_03129 -0.9 -1.7 hypothetical protein compare
OHPLBJKB_01746 -0.9 -2.4 hypothetical protein compare
OHPLBJKB_04311 -0.9 -2.7 Protein MioC compare
OHPLBJKB_00161 -0.9 -0.6 tRNA-Pro compare
OHPLBJKB_02328 -0.9 -1.3 hypothetical protein compare
OHPLBJKB_01620 -0.9 -1.1 Glucitol operon repressor compare
OHPLBJKB_02242 -0.9 -3.8 Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit compare
OHPLBJKB_02089 -0.9 -1.5 Pyridoxal kinase PdxY compare
OHPLBJKB_01757 -0.9 -2.7 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
OHPLBJKB_01081 -0.9 -3.2 Prophage tail fiber assembly protein TfaE compare
OHPLBJKB_01271 -0.9 -1.7 Ethanolamine utilization protein EutQ compare
OHPLBJKB_03756 -0.9 -2.9 putative N-acetylneuraminic acid outer membrane channel protein NanC compare
OHPLBJKB_01331 -0.9 -1.7 hypothetical protein compare
OHPLBJKB_04209 -0.9 -3.7 NAD(P)H-flavin reductase compare
OHPLBJKB_02290 -0.9 -1.3 hypothetical protein compare
OHPLBJKB_04117 -0.9 -3.7 HTH-type transcriptional repressor CytR compare
OHPLBJKB_00298 -0.9 -2.2 Transcriptional regulatory protein OmpR compare
OHPLBJKB_00010 -0.9 -1.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
OHPLBJKB_01887 -0.9 -3.6 Exodeoxyribonuclease 10 compare
OHPLBJKB_00102 -0.9 -2.7 Mannitol-1-phosphate 5-dehydrogenase compare
OHPLBJKB_00664 -0.9 -3.3 Zinc transporter ZupT compare
OHPLBJKB_04373 -0.9 -1.3 Transposon Tn3 resolvase compare
OHPLBJKB_00906 -0.9 -1.8 hypothetical protein compare
OHPLBJKB_04204 -0.9 -1.9 Trk system potassium uptake protein TrkH compare
OHPLBJKB_02127 -0.9 -1.0 Spermidine export protein MdtI compare
OHPLBJKB_03637 -0.9 -1.4 Outer membrane usher protein YehB compare
OHPLBJKB_01137 -0.8 -4.2 Protein RseC compare
OHPLBJKB_01790 -0.8 -1.3 Flagellar motor switch protein FliG compare
OHPLBJKB_01973 -0.8 -2.5 CTP pyrophosphohydrolase compare
OHPLBJKB_01112 -0.8 -2.8 Ribosomal large subunit pseudouridine synthase D compare
OHPLBJKB_02837 -0.8 -1.5 hypothetical protein compare
OHPLBJKB_00160 -0.8 -5.5 'Kdo(2)-lipid A phosphoethanolamine 7''-transferase' transl_table=11 compare
OHPLBJKB_04088 -0.8 -1.3 Soluble pyridine nucleotide transhydrogenase compare
OHPLBJKB_00874 -0.8 -2.7 Transcriptional regulator HilA compare
OHPLBJKB_00471 -0.8 -1.4 Inner membrane protein YhcB compare
OHPLBJKB_01869 -0.8 -2.8 High-affinity zinc uptake system membrane protein ZnuB compare
OHPLBJKB_02185 -0.8 -2.7 Cryptic outer membrane porin BglH compare
OHPLBJKB_01045 -0.8 -5.4 Glutamate--cysteine ligase compare
OHPLBJKB_00830 -0.8 -1.5 Hydrogenase-4 component A compare
OHPLBJKB_04239 -0.8 -1.2 Tyrosine recombinase XerC compare
OHPLBJKB_03100 -0.8 -2.3 Alkyl hydroperoxide reductase C compare
OHPLBJKB_02598 -0.8 -2.4 hypothetical protein compare
OHPLBJKB_01504 -0.8 -1.3 Chaperone NapD compare
OHPLBJKB_02066 -0.8 -2.2 HTH-type transcriptional repressor PurR compare
OHPLBJKB_04087 -0.8 -2.9 HTH-type transcriptional repressor FabR compare
OHPLBJKB_03810 -0.8 -2.0 Antitoxin ChpS compare
OHPLBJKB_04110 -0.8 -4.9 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
OHPLBJKB_02363 -0.8 -2.3 Outer membrane protein G compare
OHPLBJKB_02150 -0.8 -2.7 hypothetical protein compare
OHPLBJKB_02740 -0.8 -2.1 Hydroxyacylglutathione hydrolase GloC compare
OHPLBJKB_03118 -0.8 -1.1 Ferric enterobactin transport ATP-binding protein FepC compare
OHPLBJKB_03252 -0.8 -1.4 Protein/nucleic acid deglycase 3 compare


Specific Phenotypes

None in this experiment

For Escherichia coli HS(pFamp)R (ATCC 700891) in phage experiments