Experiment set3S548 for Escherichia coli HS(pFamp)R (ATCC 700891)

Compare to:

Phage Lil 1

Group: phage
Media: LB
Culturing: Ecoli_HSF_ML10, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Vivek on 6/1/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 1 genes in this experiment

SEED Subsystems

Subsystem #Specific
Serine-glyoxylate cycle 1
TCA Cycle 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
TCA cycle VIII (Chlamydia) 6 5 1
incomplete reductive TCA cycle 7 5 1
pyruvate fermentation to propanoate I 7 5 1
partial TCA cycle (obligate autotrophs) 8 7 1
TCA cycle II (plants and fungi) 9 7 1
TCA cycle IV (2-oxoglutarate decarboxylase) 9 7 1
TCA cycle VI (Helicobacter) 9 7 1
TCA cycle V (2-oxoglutarate synthase) 9 7 1
TCA cycle VII (acetate-producers) 9 6 1
TCA cycle I (prokaryotic) 10 9 1
TCA cycle III (animals) 10 8 1
anaerobic energy metabolism (invertebrates, mitochondrial) 10 7 1
reductive TCA cycle I 11 8 1
L-glutamate degradation VIII (to propanoate) 11 5 1
superpathway of glyoxylate bypass and TCA 12 11 1
reductive TCA cycle II 12 8 1
(S)-lactate fermentation to propanoate, acetate and hydrogen 13 10 1
superpathway of glyoxylate cycle and fatty acid degradation 14 11 1
mixed acid fermentation 16 16 1
superpathway of anaerobic energy metabolism (invertebrates) 17 12 1
methylaspartate cycle 19 9 1
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle 22 18 1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass 26 24 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 21 1