Experiment set3S482 for Escherichia coli ECRC62

Compare to:

Bas05

200 most important genes:

  gene name fitness t score description  
BNILDI_14675 -5.2 -1.4 polysaccharide biosynthesis protein compare
BNILDI_03945 -4.9 -5.5 O-antigen ligase domain-containing protein compare
BNILDI_03970 waaO -4.9 -5.3 lipopolysaccharide 3-alpha-galactosyltransferase compare
BNILDI_03950 -4.7 -10.3 beta1,3-glucosyltransferase compare
BNILDI_03965 rfaJ -4.4 -2.1 lipopolysaccharide 1,2-glucosyltransferase compare
BNILDI_03980 rfaG -4.0 -3.9 Lipopolysaccharide core biosynthesis protein RfaG compare
BNILDI_14685 -3.6 -6.6 glycosyltransferase family 1 protein compare
BNILDI_04810 wecA -3.5 -16.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
BNILDI_00095 ecpR -3.4 -1.3 ECP biosynthesis operon DNA-binding transcriptional regulator EcpR compare
BNILDI_18420 -3.1 -2.5 type I DNA topoisomerase compare
BNILDI_10345 ygdR -3.0 -1.5 lipoprotein YgdR compare
BNILDI_19210 -3.0 -1.1 DUF1425 domain-containing protein compare
BNILDI_13070 Arg_trna -2.9 -1.1 tRNA-Arg(cct) compare
BNILDI_10415 recB -2.8 -2.0 exodeoxyribonuclease V subunit beta compare
BNILDI_06965 miaA -2.7 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
BNILDI_14690 galE -2.7 -4.9 UDP-glucose 4-epimerase GalE compare
BNILDI_10365 rppH -2.7 -1.4 RNA pyrophosphohydrolase compare
BNILDI_04780 rep -2.6 -2.6 DNA helicase Rep compare
BNILDI_15795 yebO -2.5 -1.6 Uncharacterized protein YebO compare
BNILDI_19290 yceD -2.5 -2.0 23S rRNA accumulation protein YceD compare
BNILDI_05915 Thr_trna -2.4 -1.6 tRNA-Thr(ggt) compare
BNILDI_21485 pgm -2.3 -2.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
BNILDI_18510 yciB -2.3 -1.6 septation protein A compare
BNILDI_04555 atpC -2.3 -2.5 F0F1 ATP synthase subunit epsilon compare
BNILDI_15520 ruvB -2.2 -1.6 Holliday junction branch migration DNA helicase RuvB compare
BNILDI_13330 pta -2.1 -2.0 phosphate acetyltransferase compare
BNILDI_16595 lpp -2.1 -1.5 murein lipoprotein Lpp compare
BNILDI_04605 mnmG -2.0 -4.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
BNILDI_08155 -2.0 -1.5 thr operon leader peptide compare
BNILDI_13790 ccmD -2.0 -1.3 heme exporter protein CcmD compare
BNILDI_12105 hscB -2.0 -1.0 co-chaperone HscB compare
BNILDI_04405 -1.9 -3.9 tRNA modification GTPase MnmE compare
BNILDI_10405 recC -1.9 -3.0 exodeoxyribonuclease V subunit gamma compare
BNILDI_08765 aceE -1.8 -4.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
BNILDI_21470 speFL -1.8 -0.8 Leader peptide SpeFL compare
BNILDI_03975 rfaP -1.8 -2.8 lipopolysaccharide core heptose(I) kinase RfaP compare
BNILDI_07485 Leu_trna -1.7 -1.2 tRNA-Leu(caa) compare
BNILDI_14660 wzy -1.6 -1.6 O23 family O-antigen polymerase compare
BNILDI_01580 deaD -1.6 -6.0 ATP-dependent RNA helicase DeaD compare
BNILDI_11875 lepA -1.6 -3.3 translation elongation factor 4 compare
BNILDI_21310 sucA -1.6 -4.3 2-oxoglutarate dehydrogenase E1 component compare
BNILDI_12590 -1.6 -0.8 hypothetical protein compare
BNILDI_06890 epmA -1.6 -1.5 elongation factor P--(R)-beta-lysine ligase compare
BNILDI_00965 yqiJ -1.6 -0.7 Inner membrane protein YqiJ compare
BNILDI_00815 yqhH -1.5 -1.1 lipoprotein YqhH compare
BNILDI_03985 rfaQ -1.5 -3.5 lipopolysaccharide core heptosyltransferase RfaQ compare
BNILDI_20395 ftsK -1.5 -4.4 DNA translocase FtsK compare
BNILDI_01945 argR -1.5 -1.9 transcriptional regulator ArgR compare
BNILDI_13450 elaD -1.5 -1.5 ElaD/SseL family deubiquitinase compare
BNILDI_09950 pepP -1.5 -4.4 Xaa-Pro aminopeptidase compare
BNILDI_21075 -1.5 -0.9 hypothetical protein compare
BNILDI_01840 arcB -1.5 -4.1 aerobic respiration two-component sensor histidine kinase ArcB compare
BNILDI_03955 rfaJ -1.5 -2.8 UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase compare
BNILDI_18610 hns -1.5 -1.1 DNA-binding transcriptional regulator H-NS compare
BNILDI_13390 nuoC -1.5 -4.0 NADH-quinone oxidoreductase subunit C/D compare
BNILDI_02795 glpD -1.5 -3.1 glycerol-3-phosphate dehydrogenase compare
BNILDI_18375 lapA -1.4 -1.6 lipopolysaccharide assembly protein LapA compare
BNILDI_10955 hypB -1.4 -1.0 hydrogenase nickel incorporation protein HypB compare
BNILDI_23005 iprA -1.4 -0.8 hydrogen peroxide resistance inhibitor IprA compare
BNILDI_18805 ychF -1.4 -3.3 redox-regulated ATPase YchF compare
BNILDI_04850 wzxE -1.4 -2.2 lipid III flippase WzxE compare
BNILDI_07580 -1.4 -1.0 biofilm development YmgB/AriR family protein compare
BNILDI_21415 ybfQ -1.4 -1.3 Inactive transposase YbfQ compare
BNILDI_05135 rfaH -1.4 -2.5 transcription/translation regulatory transformer protein RfaH compare
BNILDI_13410 nuoH -1.3 -2.7 NADH-quinone oxidoreductase subunit NuoH compare
BNILDI_15560 -1.3 -1.6 TrmB family transcriptional regulator compare
BNILDI_07570 insB -1.3 -0.9 Transposase and inactivated derivatives, IS1 family compare
BNILDI_08980 dksA -1.3 -5.2 RNA polymerase-binding protein DksA compare
BNILDI_08415 apaH -1.3 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
BNILDI_13060 -1.3 -8.3 bactoprenol glucosyl transferase compare
BNILDI_09040 yadW -1.3 -0.7 Protein YadW compare
BNILDI_14270 yehD -1.3 -0.8 Uncharacterized fimbrial-like protein YehD compare
BNILDI_22680 clpX -1.3 -2.2 ATP-dependent protease ATP-binding subunit ClpX compare
BNILDI_21250 tolQ -1.3 -2.3 Tol-Pal system protein TolQ compare
BNILDI_09960 ubiI -1.3 -1.9 FAD-dependent 2-octaprenylphenol hydroxylase compare
BNILDI_03185 pitA -1.3 -3.7 inorganic phosphate transporter PitA compare
BNILDI_11105 recA -1.2 -1.7 recombinase RecA compare
BNILDI_16645 ydhR -1.2 -1.8 monooxygenase compare
BNILDI_21775 lipB -1.2 -0.7 lipoyl(octanoyl) transferase LipB compare
BNILDI_06320 yjbM -1.2 -0.9 Uncharacterized protein YjbM compare
BNILDI_00860 qseC -1.2 -4.3 two-component system sensor histidine kinase QseC compare
BNILDI_10025 xerD -1.2 -1.9 site-specific tyrosine recombinase XerD compare
BNILDI_17020 asr -1.2 -0.6 acid resistance repetitive basic protein Asr compare
BNILDI_15590 -1.2 -1.2 sugar ABC transporter permease compare
BNILDI_08435 surA -1.2 -4.2 peptidylprolyl isomerase SurA compare
BNILDI_09405 tetR(B -1.2 -1.2 tetracycline resistance transcriptional repressor TetR(B) compare
BNILDI_21230 pal -1.2 -2.4 peptidoglycan-associated lipoprotein Pal compare
BNILDI_15595 -1.1 -0.7 maltose ABC transporter permease compare
BNILDI_13440 nuoN -1.1 -4.0 NADH-quinone oxidoreductase subunit NuoN compare
BNILDI_16605 fumD -1.1 -2.0 fumarate hydratase FumD compare
BNILDI_22685 clpP -1.1 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
BNILDI_04515 pstS -1.1 -3.1 phosphate ABC transporter substrate-binding protein PstS compare
BNILDI_13680 rcsB -1.1 -1.4 transcriptional regulator RcsB compare
BNILDI_11835 srmB -1.1 -4.4 ATP-dependent RNA helicase SrmB compare
BNILDI_01585 yrbN -1.1 -1.6 Uncharacterized protein YrbN compare
BNILDI_01595 pnp -1.1 -4.2 polyribonucleotide nucleotidyltransferase compare
BNILDI_01505 yraN -1.1 -1.8 YraN family protein compare
BNILDI_21495 ybfF -1.0 -3.5 esterase compare
BNILDI_14830 yeeW -1.0 -1.6 Protein YeeW compare
BNILDI_13430 nuoL -1.0 -4.9 NADH-quinone oxidoreductase subunit L compare
BNILDI_13225 truA -1.0 -4.4 tRNA pseudouridine(38-40) synthase TruA compare
BNILDI_09775 tkt -1.0 -2.5 transketolase compare
BNILDI_11240 nrdH -1.0 -1.2 glutaredoxin-like protein NrdH compare
BNILDI_11600 smpB -1.0 -1.1 SsrA-binding protein SmpB compare
BNILDI_00770 exbD -1.0 -1.9 TonB system transport protein ExbD compare
BNILDI_07450 holC -1.0 -2.1 DNA polymerase III subunit chi compare
BNILDI_13755 napG -1.0 -1.1 ferredoxin-type protein NapG compare
BNILDI_19585 -1.0 -2.0 ACP S-malonyltransferase compare
BNILDI_18620 rssB -1.0 -3.9 two-component system response regulator RssB compare
BNILDI_07415 -1.0 -0.9 DNA-binding protein compare
BNILDI_10395 ygdB -1.0 -1.1 DUF2509 domain-containing protein compare
BNILDI_08590 rsmH -1.0 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BNILDI_14095 maiA -1.0 -0.7 maleylacetoacetate isomerase compare
BNILDI_08785 acnB -1.0 -1.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
BNILDI_01400 prlF -1.0 -2.1 type II toxin-antitoxin system antitoxin PrlF compare
BNILDI_12190 bamB -1.0 -2.9 outer membrane protein assembly factor BamB compare
BNILDI_23065 frmA -1.0 -1.6 S-(hydroxymethyl)glutathione dehydrogenase compare
BNILDI_06095 yjaB -1.0 -2.4 acetyltransferase compare
BNILDI_13300 folX -1.0 -1.2 dihydroneopterin triphosphate 2'-epimerase compare
BNILDI_15935 dmlR -1.0 -0.8 DNA-binding transcriptional regulator DmlR compare
BNILDI_17095 ynfA -1.0 -1.1 YnfA family protein compare
BNILDI_22670 lon_P403L -1.0 -1.9 Lon protease compare
BNILDI_14320 -1.0 -1.7 Hydroxyethylthiazole kinase compare
BNILDI_04290 ibpB -0.9 -0.8 heat shock chaperone IbpB compare
BNILDI_08425 rsmA -0.9 -1.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
BNILDI_13405 nuoG -0.9 -3.8 NADH-quinone oxidoreductase subunit NuoG compare
BNILDI_08770 aceF -0.9 -0.7 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
BNILDI_06295 dgkA -0.9 -1.4 diacylglycerol kinase compare
BNILDI_12875 ypdF -0.9 -3.1 aminopeptidase compare
BNILDI_16405 -0.9 -0.8 Integration host factor subunit alpha compare
BNILDI_21300 sucC -0.9 -2.8 ADP-forming succinate--CoA ligase subunit beta compare
BNILDI_05170 trkH -0.9 -2.8 Trk system potassium transporter TrkH compare
BNILDI_14575 wcaE -0.9 -0.7 colanic acid biosynthesis glycosyltransferase WcaE compare
BNILDI_18520 tonB -0.9 -1.7 TonB system transport protein TonB compare
BNILDI_05565 pfkA -0.9 -3.5 6-phosphofructokinase compare
BNILDI_18760 prmC -0.9 -2.1 peptide chain release factor N(5)-glutamine methyltransferase compare
BNILDI_05905 Tyr_trna -0.9 -0.5 tRNA-Tyr(gta) compare
BNILDI_09725 gshB -0.9 -2.6 glutathione synthase compare
BNILDI_21000 moaB -0.9 -2.0 molybdenum cofactor biosynthesis protein B compare
BNILDI_11985 glyA -0.9 -1.3 serine hydroxymethyltransferase compare
BNILDI_02740 -0.9 -1.7 NfuA family Fe-S biogenesis protein compare
BNILDI_19640 efeB -0.9 -1.3 iron uptake transporter deferrochelatase/peroxidase subunit compare
BNILDI_00265 gpt -0.9 -0.7 xanthine phosphoribosyltransferase compare
BNILDI_16270 chbA -0.9 -1.7 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BNILDI_07715 uxuR -0.9 -0.9 Uxu operon transcriptional regulator compare
BNILDI_06835 epmB -0.9 -1.4 EF-P beta-lysylation protein EpmB compare
BNILDI_12965 evgA -0.9 -1.0 acid-sensing system DNA-binding response regulator EvgA compare
BNILDI_18575 -0.9 -0.7 hypothetical protein compare
BNILDI_01905 sspA -0.9 -2.4 stringent starvation protein A compare
BNILDI_20570 potH -0.8 -2.4 putrescine ABC transporter permease PotH compare
BNILDI_05145 fre -0.8 -2.8 NAD(P)H-flavin reductase compare
BNILDI_18705 chaB -0.8 -1.3 putative cation transport regulator ChaB compare
BNILDI_18230 pspD -0.8 -0.6 phage shock protein PspD compare
BNILDI_11370 -0.8 -1.3 dipicolinate synthase compare
BNILDI_17675 ortT -0.8 -1.1 orphan toxin OrtT compare
BNILDI_04985 xerC -0.8 -0.8 tyrosine recombinase XerC compare
BNILDI_14720 hisA -0.8 -1.1 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
BNILDI_21490 seqA -0.8 -0.8 replication initiation negative regulator SeqA compare
BNILDI_09050 yadS -0.8 -1.1 UPF0126 inner membrane protein YadS compare
BNILDI_12510 eutQ -0.8 -2.2 ethanolamine utilization acetate kinase EutQ compare
BNILDI_05280 hemN -0.8 -2.9 oxygen-independent coproporphyrinogen III oxidase compare
BNILDI_00935 ubiK -0.8 -1.7 ubiquinone biosynthesis accessory factor UbiK compare
BNILDI_19900 yccX -0.8 -0.5 acylphosphatase compare
BNILDI_16005 yeaK -0.8 -1.6 mischarged aminoacyl-tRNA deacylase compare
BNILDI_03465 -0.8 -1.5 hypothetical protein compare
BNILDI_01335 tdcD -0.8 -3.7 propionate kinase compare
BNILDI_11730 rluD -0.8 -2.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
BNILDI_01805 ptsN -0.8 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
BNILDI_17775 ydcH -0.8 -1.7 Uncharacterized protein YdcH compare
BNILDI_13415 nuoI -0.8 -0.8 NADH-quinone oxidoreductase subunit NuoI compare
BNILDI_05125 tatC -0.8 -2.7 Sec-independent protein translocase subunit TatC compare
BNILDI_08920 panC -0.8 -1.7 pantoate--beta-alanine ligase compare
BNILDI_04610 mioC -0.8 -2.6 FMN-binding protein MioC compare
BNILDI_19980 pqiC -0.8 -2.9 membrane integrity-associated transporter subunit PqiC compare
BNILDI_01520 yraQ -0.8 -1.5 UPF0718 protein YraQ compare
BNILDI_15700 holE -0.8 -0.5 DNA polymerase III subunit theta compare
BNILDI_02790 glpE -0.8 -1.5 thiosulfate sulfurtransferase GlpE compare
BNILDI_19540 cgsE -0.8 -1.3 curli production assembly/transport protein CsgE compare
BNILDI_07995 yjjG -0.8 -2.3 pyrimidine 5'-nucleotidase compare
BNILDI_06770 yjdC -0.8 -1.6 transcriptional regulator compare
BNILDI_10020 fldB -0.8 -2.8 flavodoxin FldB compare
BNILDI_02225 yhdN -0.7 -1.0 Uncharacterized protein YhdN compare
BNILDI_07310 fbp -0.7 -3.7 class 1 fructose-bisphosphatase compare
BNILDI_01435 agaF -0.7 -1.0 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA compare
BNILDI_12530 eutN -0.7 -0.5 ethanolamine utilization microcompartment protein EutN compare
BNILDI_21320 sdhA -0.7 -3.1 succinate dehydrogenase flavoprotein subunit compare
BNILDI_05720 metL -0.7 -4.6 bifunctional aspartate kinase/homoserine dehydrogenase II compare
BNILDI_19915 yccU -0.7 -1.0 Uncharacterized protein YccU compare
BNILDI_12215 guaA -0.7 -2.3 glutamine-hydrolyzing GMP synthase compare
BNILDI_13510 arnT -0.7 -0.5 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
BNILDI_13400 nuoF -0.7 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
BNILDI_11300 gabD -0.7 -2.6 NADP-dependent succinate-semialdehyde dehydrogenase compare
BNILDI_13050 -0.7 -1.6 Glucosyl transferase GtrII compare
BNILDI_03770 -0.7 -0.8 hypothetical protein compare
BNILDI_05560 -0.7 -1.2 Abc transport membrane permease compare
BNILDI_21325 sdhD -0.7 -2.6 succinate dehydrogenase membrane anchor subunit compare
BNILDI_19105 potB -0.7 -2.4 spermidine/putrescine ABC transporter permease PotB compare
BNILDI_03825 mtlD -0.7 -1.4 mannitol-1-phosphate 5-dehydrogenase compare
BNILDI_13830 yejM -0.7 -3.0 LPS biosynthesis-modulating metalloenzyme YejM compare
BNILDI_11545 dam -0.7 -1.5 Retron Ec67 DNA adenine methylase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC62 in phage experiments

For phage Phage across organisms