Experiment set3S476 for Variovorax sp. SCN45

Compare to:

Community=Locust bean gum; Passage=4

200 most important genes:

  gene name fitness t score description  
GFF5512 -6.1 -5.9 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5158 -5.9 -4.1 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF5513 -5.7 -3.9 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF6250 -5.7 -3.9 Glutamate--cysteine ligase-like protein YbdK compare
GFF3957 -5.6 -2.5 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF903 -5.5 -3.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF2273 -5.5 -3.5 Transcriptional regulator, AcrR family compare
GFF2128 -5.5 -5.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF6249 -5.4 -3.7 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF856 -5.4 -2.5 no description compare
GFF946 -5.4 -3.2 Iron-sulfur cluster regulator IscR compare
GFF3904 -5.2 -2.0 Probable signal peptide protein compare
GFF5509 -5.0 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1775 -5.0 -2.0 no description compare
GFF3089 -5.0 -2.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF1324 -4.9 -3.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF902 -4.9 -8.3 Transcriptional regulator, AsnC family compare
GFF3425 -4.9 -1.9 no description compare
GFF3146 -4.9 -2.2 no description compare
GFF7380 -4.8 -3.3 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF934 -4.8 -3.3 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF2307 -4.8 -4.6 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF3941 -4.7 -3.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF3660 -4.7 -9.5 integral membrane sensor signal transduction histidine kinase compare
GFF7242 -4.7 -1.1 hypothetical protein compare
GFF270 -4.6 -13.0 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF4829 -4.6 -9.4 Isocitrate lyase (EC 4.1.3.1) compare
GFF2818 -4.5 -19.3 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
GFF4967 -4.5 -1.0 Glutathione S-transferase family protein compare
GFF3583 -4.5 -11.2 AMP nucleosidase (EC 3.2.2.4) compare
GFF5627 -4.5 -3.1 [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC) compare
GFF3704 -4.5 -1.4 FIG00536957: hypothetical protein compare
GFF1668 -4.5 -2.4 BUG/TctC family periplasmic protein compare
GFF2192 -4.4 -2.6 FIG00932626: hypothetical protein compare
GFF2239 -4.4 -1.0 no description compare
GFF272 -4.4 -1.4 thioesterase superfamily protein compare
GFF936 -4.4 -9.4 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF3264 -4.4 -4.2 Methionine biosynthesis protein MetW compare
GFF3779 -4.4 -1.3 hypothetical protein compare
GFF6770 -4.4 -5.2 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
GFF5701 -4.3 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF4606 -4.2 -1.0 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF4724 -4.2 -5.0 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF1899 -4.2 -12.0 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits compare
GFF576 -4.2 -2.7 Tol biopolymer transport system, TolR protein compare
GFF269 -4.2 -6.9 2-methylaconitate isomerase compare
GFF7357 -4.2 -2.3 Phenylacetate ABC transporter, ATP-binding protein 1 compare
GFF302 -4.1 -2.7 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF292 -4.1 -4.9 Tol-Pal system beta propeller repeat protein TolB compare
GFF4557 -4.1 -2.8 Dihydroorotase (EC 3.5.2.3) compare
GFF865 -4.0 -1.8 hypothetical protein compare
GFF6512 -4.0 -1.8 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF273 -3.9 -8.8 Transcriptional regulator, Xre family compare
GFF2562 -3.9 -0.9 UPF0391 membrane protein RGE_28580 compare
GFF4305 -3.9 -0.9 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF7250 -3.9 -0.9 Putative transposase InsK for insertion sequence element IS150 compare
GFF268 -3.9 -7.0 Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
GFF2365 -3.9 -7.4 Altronate dehydratase (EC 4.2.1.7) compare
GFF3406 -3.9 -9.0 Benzoyl-CoA oxygenase component A compare
GFF271 -3.8 -9.6 2-methylcitrate synthase (EC 2.3.3.5) compare
GFF4626 -3.8 -2.6 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF4625 -3.8 -2.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF6996 -3.8 -0.9 Flagellar hook-basal body complex protein FliE compare
GFF1167 -3.8 -13.8 Predicted Lactate-responsive regulator, IclR family compare
GFF6150 -3.8 -9.4 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF243 -3.8 -5.1 Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3) compare
GFF2659 -3.7 -1.9 Electron transfer flavoprotein, alpha subunit compare
GFF4447 -3.7 -2.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF2714 -3.7 -4.6 2-ketogluconate utilization repressor PtxS compare
GFF1658 -3.6 -1.4 Transcriptional regulator, LysR family compare
GFF5246 -3.6 -9.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF575 -3.6 -2.5 Tol-Pal system protein TolQ compare
GFF5666 -3.6 -2.5 Prevent host death protein, Phd antitoxin compare
GFF5156 -3.6 -19.7 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF6028 -3.5 -10.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
GFF2398 -3.5 -1.3 Uncharacterized MFS-type transporter compare
GFF577 -3.5 -1.9 TolA protein compare
GFF1013 -3.4 -1.1 hypothetical protein compare
GFF6397 -3.4 -1.4 LysR family transcriptional regulator PA2758 compare
GFF2482 -3.4 -1.1 Urease accessory protein UreE compare
GFF7010 -3.4 -2.4 no description compare
GFF4106 -3.4 -1.1 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF4454 -3.3 -2.3 Exoribonuclease II (EC 3.1.13.1) compare
GFF4825 -3.3 -3.5 SWIB/MDM2 domain-containing proteins compare
GFF1322 -3.3 -15.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF5333 -3.3 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3600 -3.3 -2.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF244 -3.3 -2.3 Cys regulon transcriptional activator CysB compare
GFF7216 -3.3 -2.0 hypothetical protein compare
GFF6305 -3.2 -16.4 Malate synthase G (EC 2.3.3.9) compare
GFF6328 -3.2 -0.7 LPS-assembly lipoprotein LptE compare
GFF7178 -3.2 -1.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF290 -3.2 -9.2 Cell division coordinator CpoB compare
GFF6190 -3.2 -6.6 3-hydroxyisobutyrate dehydrogenase family protein compare
GFF1262 -3.2 -1.0 Rhodanese-related sulfurtransferase compare
GFF168 -3.2 -6.5 MCP methyltransferase, CheR-type compare
GFF1206 -3.2 -8.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF7377 -3.2 -7.7 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
GFF2300 -3.2 -10.1 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF6334 -3.2 -1.4 no description compare
GFF1900 -3.2 -4.1 Transcriptional regulator, LysR family compare
GFF7239 -3.1 -2.4 Repair of Iron Centers di-iron protein compare
GFF6197 -3.1 -2.2 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF291 -3.1 -3.7 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF5743 -3.1 -1.9 Flagellar motor switch protein FliM compare
GFF1559 -3.1 -1.0 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF982 -3.1 -14.7 Cell division protein ZapE compare
GFF5267 -3.0 -2.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1869 -3.0 -0.9 no description compare
GFF4490 -3.0 -3.6 Site-specific tyrosine recombinase XerC compare
GFF5317 -3.0 -1.0 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF5065 -3.0 -2.0 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF4099 -3.0 -1.8 Ser/Thr protein phosphatase family protein compare
GFF6127 -3.0 -11.0 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit compare
GFF944 -3.0 -1.8 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF5332 -3.0 -20.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2949 -3.0 -1.2 no description compare
GFF690 -2.9 -3.8 Transcriptional regulator, IclR family compare
GFF6161 -2.9 -1.2 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF6786 -2.9 -1.9 CopG protein compare
GFF6191 -2.9 -10.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF5739 -2.8 -0.9 Flagellar biosynthesis protein FliQ compare
GFF4084 -2.8 -1.5 hypothetical protein compare
GFF1047 -2.8 -11.7 hypothetical protein compare
GFF4748 -2.8 -1.3 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF6696 -2.8 -9.9 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF1113 -2.8 -2.2 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF5411 -2.8 -13.5 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF1831 -2.8 -1.5 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF6151 -2.8 -8.3 Transcriptional regulator, LysR family compare
GFF2815 -2.8 -2.1 Primosomal replication protein N compare
GFF6322 -2.8 -10.2 Glutathione synthetase (EC 6.3.2.3) compare
GFF7381 -2.8 -8.9 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
GFF4352 -2.8 -1.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF2249 -2.7 -1.5 no description compare
GFF3265 -2.7 -1.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF213 -2.7 -3.6 tmRNA-binding protein SmpB compare
GFF6192 -2.7 -6.6 Amidase family protein Atu4441 compare
GFF2073 -2.7 -2.6 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF7379 -2.7 -12.1 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
GFF1773 -2.7 -10.1 D-amino acid dehydrogenase (EC 1.4.99.6) compare
GFF487 -2.6 -8.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF6246 -2.6 -3.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF2870 -2.6 -11.5 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) compare
GFF5324 -2.6 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF2844 -2.6 -7.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF7035 -2.6 -4.3 UspA compare
GFF408 -2.6 -1.2 Two-component system response regulator OmpR compare
GFF2843 -2.6 -6.7 Murein hydrolase activator NlpD compare
GFF2627 -2.6 -1.8 Chorismate synthase (EC 4.2.3.5) compare
GFF1475 -2.6 -0.8 no description compare
GFF4492 -2.6 -6.8 Protein of unknown function DUF484 compare
GFF4215 -2.6 -1.3 L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ compare
GFF1680 -2.6 -4.5 KEGG: GntR family transcriptional regulator compare
GFF3374 -2.5 -1.6 no description compare
GFF3401 -2.5 -0.8 P-hydroxylaminobenzoate lyase compare
GFF3905 -2.5 -6.0 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF3152 -2.5 -2.9 hypothetical protein compare
GFF4120 -2.5 -1.5 no description compare
GFF3943 -2.5 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
GFF5729 -2.5 -3.6 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF5491 -2.5 -3.4 Peptide deformylase (EC 3.5.1.88) compare
GFF6441 -2.5 -1.7 hypothetical protein compare
GFF488 -2.5 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2523 -2.5 -1.4 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF3241 -2.5 -1.5 hypothetical protein compare
GFF966 -2.4 -7.8 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3986 -2.4 -1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF1756 -2.4 -1.1 hypothetical protein compare
GFF4817 -2.4 -1.7 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF1205 -2.4 -5.0 Oxidoreductase probably involved in sulfite reduction compare
GFF3974 -2.4 -2.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF2515 -2.4 -1.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF4639 -2.4 -10.6 Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33) compare
GFF3352 -2.4 -0.8 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF409 -2.4 -2.3 Osmolarity sensory histidine kinase EnvZ compare
GFF461 -2.4 -2.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF5896 -2.3 -1.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF1203 -2.3 -6.8 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF7376 -2.3 -8.9 Transcriptional regulator, LysR family compare
GFF1060 -2.3 -2.2 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF5331 -2.3 -11.5 Transposase and inactivated derivatives compare
GFF5105 -2.3 -3.8 Transcriptional regulator, MerR family compare
GFF3838 -2.3 -10.7 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF6182 -2.3 -1.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF3584 -2.3 -0.7 hypothetical protein compare
GFF1204 -2.3 -5.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF5676 -2.3 -6.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
GFF4638 -2.3 -10.6 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
GFF4747 -2.3 -3.4 Quinone oxidoreductase (EC 1.6.5.5) compare
GFF7282 -2.2 -2.5 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
GFF2297 -2.2 -9.9 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF2572 -2.2 -9.3 Protein-export protein SecB (maintains pre-export unfolded state) compare
GFF339 -2.2 -1.5 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF4718 -2.2 -2.2 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF3870 -2.2 -3.0 Ribonuclease III (EC 3.1.26.3) compare
GFF6695 -2.2 -9.0 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF1594 -2.2 -2.6 Antitoxin DinJ (binds YafQ toxin) compare
GFF2715 -2.2 -2.5 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
GFF7289 -2.2 -1.4 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare


Specific Phenotypes

For 1 genes in this experiment

For complex community Community=Locust bean gum; Passage=4 in Variovorax sp. SCN45

For complex community Community=Locust bean gum; Passage=4 across organisms