Experiment set3S474 for Variovorax sp. SCN45

Compare to:

Community=Locust bean gum; Passage=4

200 most important genes:

  gene name fitness t score description  
GFF5512 -6.4 -4.4 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5158 -5.8 -4.0 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF6250 -5.7 -4.0 Glutamate--cysteine ligase-like protein YbdK compare
GFF5513 -5.7 -3.9 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF2128 -5.6 -3.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3957 -5.6 -2.5 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF946 -5.5 -3.1 Iron-sulfur cluster regulator IscR compare
GFF902 -5.5 -3.8 Transcriptional regulator, AsnC family compare
GFF6194 -5.5 -2.7 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF6249 -5.4 -3.8 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF269 -5.3 -3.7 2-methylaconitate isomerase compare
GFF5669 -5.2 -1.1 hypothetical protein compare
GFF270 -5.1 -3.6 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF1788 -5.1 -1.1 hypothetical protein compare
GFF936 -5.1 -6.1 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF903 -5.1 -6.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF2680 -5.1 -1.1 Protein of unknown function DUF1058 compare
GFF3089 -5.0 -2.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5509 -5.0 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF3264 -4.9 -3.4 Methionine biosynthesis protein MetW compare
GFF934 -4.9 -3.4 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF1900 -4.9 -6.6 Transcriptional regulator, LysR family compare
GFF6190 -4.8 -6.5 3-hydroxyisobutyrate dehydrogenase family protein compare
GFF4469 -4.7 -1.8 Cell division protein FtsA compare
GFF4482 -4.7 -2.5 Transcriptional regulator MraZ compare
GFF2818 -4.7 -19.4 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
GFF3583 -4.7 -12.3 AMP nucleosidase (EC 3.2.2.4) compare
GFF1899 -4.7 -10.4 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits compare
GFF3451 -4.5 -1.0 no description compare
GFF5627 -4.5 -3.1 [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC) compare
GFF272 -4.5 -1.4 thioesterase superfamily protein compare
GFF20 -4.4 -1.7 hypothetical protein compare
GFF3941 -4.4 -4.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5701 -4.3 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF6191 -4.3 -9.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF3660 -4.3 -11.1 integral membrane sensor signal transduction histidine kinase compare
GFF577 -4.3 -1.9 TolA protein compare
GFF576 -4.3 -2.6 Tol biopolymer transport system, TolR protein compare
GFF1051 -4.2 -1.3 no description compare
GFF6770 -4.2 -6.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
GFF4606 -4.2 -0.9 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF302 -4.2 -2.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF6379 -4.2 -2.4 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF3114 -4.2 -1.3 Methionine ABC transporter ATP-binding protein compare
GFF7266 -4.1 -1.3 L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16) compare
GFF5246 -4.1 -7.5 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF1167 -4.1 -13.5 Predicted Lactate-responsive regulator, IclR family compare
GFF2273 -4.1 -4.3 Transcriptional regulator, AcrR family compare
GFF5156 -4.0 -20.2 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF6512 -4.0 -1.7 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF4724 -4.0 -5.4 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF4829 -3.9 -12.6 Isocitrate lyase (EC 4.1.3.1) compare
GFF273 -3.9 -8.7 Transcriptional regulator, Xre family compare
GFF3928 -3.9 -2.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF292 -3.9 -8.3 Tol-Pal system beta propeller repeat protein TolB compare
GFF3394 -3.8 -0.8 Benzoate ABC transporter, ATP-binding protein 1 compare
GFF4626 -3.8 -2.6 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF4625 -3.8 -2.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF7076 -3.8 -1.4 no description compare
GFF7380 -3.8 -2.6 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF4187 -3.8 -2.3 hypothetical protein compare
GFF2307 -3.8 -10.5 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF4557 -3.7 -5.7 Dihydroorotase (EC 3.5.2.3) compare
GFF575 -3.7 -2.5 Tol-Pal system protein TolQ compare
GFF6127 -3.7 -12.1 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit compare
GFF1658 -3.7 -1.4 Transcriptional regulator, LysR family compare
GFF2870 -3.6 -15.6 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) compare
GFF5666 -3.6 -2.5 Prevent host death protein, Phd antitoxin compare
GFF4447 -3.6 -3.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF1332 -3.5 -3.9 no description compare
GFF3360 -3.5 -1.1 no description compare
GFF3250 -3.5 -1.3 Barstar, ribonuclease (Barnase) inhibitor compare
GFF3838 -3.5 -14.9 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF6322 -3.5 -13.1 Glutathione synthetase (EC 6.3.2.3) compare
GFF5814 -3.4 -3.6 Rhodanese-related sulfurtransferase compare
GFF3702 -3.4 -0.8 Beta-propeller domains of methanol dehydrogenase type compare
GFF7010 -3.4 -2.2 no description compare
GFF6839 -3.4 -1.1 hypothetical protein compare
GFF864 -3.4 -1.5 no description compare
GFF982 -3.4 -14.6 Cell division protein ZapE compare
GFF1356 -3.4 -2.1 Putative manganese efflux pump MntP compare
GFF3450 -3.4 -3.7 Transcriptional regulator, LacI family compare
GFF6397 -3.4 -1.3 LysR family transcriptional regulator PA2758 compare
GFF3369 -3.4 -1.0 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF7231 -3.3 -1.3 no description compare
GFF3600 -3.3 -2.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF4454 -3.3 -2.3 Exoribonuclease II (EC 3.1.13.1) compare
GFF268 -3.3 -5.9 Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
GFF378 -3.3 -2.2 RNA (nucleoside 2'-O)-methyltransferase compare
GFF6328 -3.3 -0.7 LPS-assembly lipoprotein LptE compare
GFF244 -3.3 -2.3 Cys regulon transcriptional activator CysB compare
GFF1775 -3.3 -1.7 no description compare
GFF2173 -3.2 -1.4 no description compare
GFF2432 -3.2 -1.4 Fe2+-dicitrate sensor, membrane component compare
GFF4334 -3.2 -1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF291 -3.2 -3.8 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF271 -3.1 -11.6 2-methylcitrate synthase (EC 2.3.3.5) compare
GFF1206 -3.1 -8.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF6028 -3.1 -10.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
GFF6305 -3.1 -14.1 Malate synthase G (EC 2.3.3.9) compare
GFF89 -3.1 -1.4 hypothetical protein compare
GFF7377 -3.1 -4.8 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
GFF2847 -3.1 -1.5 histone-like nucleoid-structuring protein H-NS compare
GFF6161 -3.1 -1.2 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF944 -3.1 -1.8 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF213 -3.1 -2.1 tmRNA-binding protein SmpB compare
GFF431 -3.1 -1.6 Esterase/lipase compare
GFF5332 -3.1 -19.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2659 -3.0 -2.0 Electron transfer flavoprotein, alpha subunit compare
GFF6192 -3.0 -6.9 Amidase family protein Atu4441 compare
GFF6151 -3.0 -8.0 Transcriptional regulator, LysR family compare
GFF5065 -3.0 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF1322 -3.0 -13.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF2949 -3.0 -1.1 no description compare
GFF1192 -3.0 -2.5 no description compare
GFF5317 -3.0 -0.9 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF5267 -3.0 -2.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3406 -3.0 -10.7 Benzoyl-CoA oxygenase component A compare
GFF6523 -2.9 -2.0 hypothetical protein compare
GFF1016 -2.9 -4.5 no description compare
GFF2573 -2.9 -8.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF7245 -2.9 -0.9 universal stress protein, UspA family compare
GFF5424 -2.9 -1.1 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF2843 -2.9 -4.0 Murein hydrolase activator NlpD compare
GFF6221 -2.9 -0.9 T6SS associated component TagF (ImpM) compare
GFF5739 -2.9 -0.9 Flagellar biosynthesis protein FliQ compare
GFF4748 -2.9 -1.2 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF168 -2.9 -7.7 MCP methyltransferase, CheR-type compare
GFF4358 -2.9 -2.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF6787 -2.8 -1.5 Copper tolerance protein compare
GFF2772 -2.8 -6.0 Site-specific tyrosine recombinase XerD compare
GFF4285 -2.8 -1.2 Tricarboxylate transport protein TctC compare
GFF6094 -2.8 -2.2 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149) compare
GFF2410 -2.8 -2.1 Intracellular protease compare
GFF6150 -2.8 -9.8 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF6198 -2.8 -5.8 D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83) compare
GFF6701 -2.8 -1.7 Regulatory protein, RpfE type compare
GFF1324 -2.8 -5.1 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF966 -2.8 -8.1 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3265 -2.8 -1.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF4018 -2.7 -1.9 Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family compare
GFF3377 -2.7 -0.6 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF2572 -2.7 -10.4 Protein-export protein SecB (maintains pre-export unfolded state) compare
GFF1047 -2.7 -12.3 hypothetical protein compare
GFF3854 -2.7 -2.2 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF6997 -2.7 -1.1 Flagellar basal-body rod protein FlgC compare
GFF408 -2.7 -1.2 Two-component system response regulator OmpR compare
GFF6696 -2.7 -7.6 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF6990 -2.6 -1.0 hypothetical protein compare
GFF487 -2.6 -9.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF6401 -2.6 -7.4 Formiminoglutamic iminohydrolase (EC 3.5.3.13) compare
GFF2547 -2.6 -1.6 Type I antifreeze protein compare
GFF4665 -2.6 -3.9 no description compare
GFF6989 -2.6 -0.8 Flagellar basal-body rod modification protein FlgD compare
GFF2627 -2.6 -1.8 Chorismate synthase (EC 4.2.3.5) compare
GFF275 -2.6 -2.8 FIG00349534: hypothetical protein compare
GFF5491 -2.6 -3.1 Peptide deformylase (EC 3.5.1.88) compare
GFF2987 -2.6 -4.7 CBS domain protein compare
GFF6107 -2.6 -2.6 Zinc transporter, ZIP family compare
GFF2714 -2.6 -3.7 2-ketogluconate utilization repressor PtxS compare
GFF497 -2.6 -5.4 Phytoene synthase (EC 2.5.1.32) compare
GFF4027 -2.6 -2.2 hypothetical protein compare
GFF5324 -2.6 -1.2 Shikimate kinase I (EC 2.7.1.71) compare
GFF2365 -2.6 -5.7 Altronate dehydratase (EC 4.2.1.7) compare
GFF4639 -2.5 -10.4 Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33) compare
GFF1611 -2.5 -4.6 no description compare
GFF219 -2.5 -4.0 GTP-binding protein TypA/BipA compare
GFF4192 -2.5 -0.8 no description compare
GFF2523 -2.5 -1.4 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF6273 -2.5 -3.8 Nicotinamide-nucleotide amidase (EC 3.5.1.42) compare
GFF488 -2.5 -7.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1632 -2.5 -0.8 RNA polymerase ECF-type sigma factor compare
GFF6998 -2.4 -1.2 Flagellar basal-body rod protein FlgB compare
GFF6695 -2.4 -9.5 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF409 -2.4 -2.4 Osmolarity sensory histidine kinase EnvZ compare
GFF2838 -2.4 -0.9 hypothetical protein compare
GFF1756 -2.4 -1.1 hypothetical protein compare
GFF2515 -2.4 -1.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF4632 -2.4 -8.7 Glycosyl transferase, family 2 compare
GFF6182 -2.4 -1.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF1098 -2.4 -5.6 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
GFF1205 -2.4 -4.2 Oxidoreductase probably involved in sulfite reduction compare
GFF602 -2.4 -2.1 Transcriptional regulator, LysR family => TcuR compare
GFF3584 -2.4 -0.7 hypothetical protein compare
GFF290 -2.4 -7.0 Cell division coordinator CpoB compare
GFF5896 -2.4 -1.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF4903 -2.4 -0.7 no description compare
GFF674 -2.3 -1.0 no description compare
GFF5333 -2.3 -1.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF5331 -2.3 -11.0 Transposase and inactivated derivatives compare
GFF3438 -2.3 -1.6 Amidohydrolase family protein compare
GFF1013 -2.3 -1.2 hypothetical protein compare
GFF5876 -2.3 -1.6 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF2298 -2.3 -13.2 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF1773 -2.3 -7.4 D-amino acid dehydrogenase (EC 1.4.99.6) compare
GFF4638 -2.3 -11.1 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
GFF84 -2.3 -1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF2740 -2.3 -7.5 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
GFF4972 -2.3 -2.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF1219 -2.3 -1.8 SAM-dependent methyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For complex community Community=Locust bean gum; Passage=4 in Variovorax sp. SCN45

For complex community Community=Locust bean gum; Passage=4 across organisms