Experiment set3S473 for Variovorax sp. SCN45

Community=Locust bean gum; Passage=4

Group: complex community
Media: + Community=Locust bean gum; Passage=4
Culturing: Variovorax_SCN45_ML2
By: Tom Hessler on 23-Oct-24

Specific Phenotypes

For 4 genes in this experiment

For complex community Community=Locust bean gum; Passage=4 in Variovorax sp. SCN45

For complex community Community=Locust bean gum; Passage=4 across organisms

SEED Subsystems

Subsystem	#Specific
Arginine Biosynthesis extended	1
Benzoate degradation	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Urea cycle and metabolism of amino groups
• Arginine and proline metabolism
• Geraniol degradation
• Lysine biosynthesis
• Phenylalanine metabolism
• Tryptophan metabolism
• 1- and 2-Methylnaphthalene degradation
• Naphthalene and anthracene degradation
• Limonene and pinene degradation
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
salicylate degradation II	1	1	1
salicylate glucosides biosynthesis II	2	1	1
L-ornithine biosynthesis I	5	5	1
cinnamate and 3-hydroxycinnamate degradation to 2-hydroxypentadienoate	5	2	1
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation to 2-hydroxypentadienoate	5	2	1
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation	8	2	1
L-arginine biosynthesis I (via L-ornithine)	9	9	1
L-arginine biosynthesis III (via N-acetyl-L-citrulline)	9	8	1
L-arginine biosynthesis II (acetyl cycle)	10	10	1
superpathway of arginine and polyamine biosynthesis	17	15	1