Experiment set3S472 for Variovorax sp. SCN45

Compare to:

Community=guar; Passage=4

200 most important genes:

  gene name fitness t score description  
GFF5512 -6.7 -4.6 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5158 -6.1 -4.2 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF5513 -6.0 -4.1 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF6250 -5.9 -4.1 Glutamate--cysteine ligase-like protein YbdK compare
GFF3583 -5.7 -9.5 AMP nucleosidase (EC 3.2.2.4) compare
GFF946 -5.6 -3.6 Iron-sulfur cluster regulator IscR compare
GFF6249 -5.6 -3.9 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF903 -5.5 -5.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF936 -5.5 -3.8 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF902 -5.4 -6.5 Transcriptional regulator, AsnC family compare
GFF3089 -5.2 -3.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF1324 -5.2 -3.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF2128 -5.2 -7.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3425 -5.1 -2.2 no description compare
GFF3264 -5.1 -3.5 Methionine biosynthesis protein MetW compare
GFF5927 -5.0 -2.2 3-oxoacyl-[ACP] synthase compare
GFF3941 -4.9 -3.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF3660 -4.9 -10.4 integral membrane sensor signal transduction histidine kinase compare
GFF5509 -4.9 -8.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF7010 -4.9 -2.7 no description compare
GFF934 -4.8 -5.7 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF4143 -4.7 -2.0 Dihydrofolate reductase (EC 1.5.1.3) compare
GFF2815 -4.7 -2.6 Primosomal replication protein N compare
GFF5627 -4.7 -3.2 [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC) compare
GFF2273 -4.6 -4.3 Transcriptional regulator, AcrR family compare
GFF2341 -4.6 -1.1 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF4724 -4.5 -4.4 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF577 -4.5 -2.2 TolA protein compare
GFF576 -4.5 -3.1 Tol biopolymer transport system, TolR protein compare
GFF302 -4.4 -3.0 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF2307 -4.3 -8.8 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF7380 -4.3 -4.2 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF292 -4.2 -6.5 Tol-Pal system beta propeller repeat protein TolB compare
GFF6512 -4.2 -2.1 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF1206 -4.2 -5.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF5246 -4.1 -10.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF6263 -4.1 -1.0 Uncharacterized protein Atu0170, clustered with phosphonate utilization compare
GFF1204 -4.1 -8.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF5156 -4.1 -22.0 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF4829 -4.0 -13.1 Isocitrate lyase (EC 4.1.3.1) compare
GFF4557 -4.0 -5.5 Dihydroorotase (EC 3.5.2.3) compare
GFF2659 -3.9 -2.2 Electron transfer flavoprotein, alpha subunit compare
GFF4447 -3.9 -2.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF270 -3.9 -18.3 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF966 -3.9 -2.7 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF1060 -3.8 -2.1 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF2818 -3.8 -21.1 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
GFF5666 -3.8 -2.6 Prevent host death protein, Phd antitoxin compare
GFF575 -3.8 -3.7 Tol-Pal system protein TolQ compare
GFF3250 -3.7 -1.6 Barstar, ribonuclease (Barnase) inhibitor compare
GFF4792 -3.6 -3.0 PhnB protein compare
GFF269 -3.6 -5.2 2-methylaconitate isomerase compare
GFF6150 -3.6 -11.8 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF6397 -3.6 -1.6 LysR family transcriptional regulator PA2758 compare
GFF2164 -3.6 -5.5 Transcriptional regulator, IclR family compare
GFF3152 -3.6 -3.5 hypothetical protein compare
GFF3406 -3.6 -11.4 Benzoyl-CoA oxygenase component A compare
GFF1013 -3.6 -1.2 hypothetical protein compare
GFF3600 -3.6 -2.4 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF168 -3.5 -5.9 MCP methyltransferase, CheR-type compare
GFF4454 -3.5 -2.4 Exoribonuclease II (EC 3.1.13.1) compare
GFF3569 -3.5 -1.3 Organic hydroperoxide resistance protein compare
GFF2329 -3.5 -1.9 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF570 -3.5 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
GFF6374 -3.5 -1.2 predicted 2-keto-3-deoxyxylonate dehydratase compare
GFF3206 -3.5 -1.2 no description compare
GFF5091 -3.5 -1.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
GFF291 -3.5 -2.4 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF244 -3.5 -2.4 Cys regulon transcriptional activator CysB compare
GFF1468 -3.4 -3.1 Transcriptional regulator, GntR family compare
GFF3369 -3.4 -1.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF5386 -3.4 -1.5 hypothetical protein compare
GFF6191 -3.3 -10.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF243 -3.3 -4.8 Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3) compare
GFF2847 -3.3 -1.8 histone-like nucleoid-structuring protein H-NS compare
GFF3320 -3.3 -1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF6425 -3.3 -2.1 no description compare
GFF5267 -3.2 -2.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF944 -3.2 -2.1 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF6383 -3.2 -1.4 FIG00440100: hypothetical protein compare
GFF1167 -3.2 -12.4 Predicted Lactate-responsive regulator, IclR family compare
GFF5065 -3.2 -2.2 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF7255 -3.2 -1.3 BUG/TctC family periplasmic protein compare
GFF4663 -3.2 -1.1 no description compare
GFF6195 -3.2 -3.4 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF1205 -3.1 -3.2 Oxidoreductase probably involved in sulfite reduction compare
GFF3956 -3.1 -1.8 no description compare
GFF3960 -3.1 -8.6 3'-to-5' oligoribonuclease (orn) compare
GFF5317 -3.1 -1.1 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF6971 -3.1 -1.9 no description compare
GFF4748 -3.0 -1.5 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF2987 -3.0 -5.7 CBS domain protein compare
GFF3957 -3.0 -1.9 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF4346 -3.0 -1.0 no description compare
GFF6194 -3.0 -3.1 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF3265 -2.9 -1.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF7035 -2.9 -8.5 UspA compare
GFF423 -2.9 -2.9 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
GFF4967 -2.9 -1.0 Glutathione S-transferase family protein compare
GFF408 -2.9 -1.4 Two-component system response regulator OmpR compare
GFF1203 -2.9 -7.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF2843 -2.9 -6.7 Murein hydrolase activator NlpD compare
GFF1899 -2.9 -13.6 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits compare
GFF3050 -2.8 -1.4 Lactam utilization protein LamB compare
GFF5324 -2.8 -1.5 Shikimate kinase I (EC 2.7.1.71) compare
GFF271 -2.8 -11.1 2-methylcitrate synthase (EC 2.3.3.5) compare
GFF6770 -2.8 -7.8 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
GFF1322 -2.8 -14.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF5276 -2.8 -8.5 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) compare
GFF2870 -2.8 -13.8 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) compare
GFF2627 -2.8 -1.9 Chorismate synthase (EC 4.2.3.5) compare
GFF1364 -2.8 -2.3 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
GFF4803 -2.8 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
GFF84 -2.8 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF6997 -2.8 -1.3 Flagellar basal-body rod protein FlgC compare
GFF5815 -2.8 -1.5 Uncharacterized MFS-type transporter compare
GFF571 -2.8 -2.4 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
GFF1663 -2.7 -5.0 Isocitrate lyase (EC 4.1.3.1) compare
GFF409 -2.7 -1.9 Osmolarity sensory histidine kinase EnvZ compare
GFF6190 -2.7 -7.4 3-hydroxyisobutyrate dehydrogenase family protein compare
GFF1202 -2.7 -8.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF7377 -2.7 -7.5 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
GFF6028 -2.7 -8.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
GFF2523 -2.7 -1.7 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF497 -2.7 -5.3 Phytoene synthase (EC 2.5.1.32) compare
GFF6862 -2.7 -4.0 Two-component system sensor histidine kinase compare
GFF89 -2.7 -1.1 hypothetical protein compare
GFF7379 -2.7 -10.1 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
GFF1782 -2.6 -3.7 integral membrane sensor signal transduction histidine kinase compare
GFF1908 -2.6 -1.5 Short-chain dehydrogenases of various substrate specificities compare
GFF21 -2.6 -1.6 no description compare
GFF3870 -2.6 -1.8 Ribonuclease III (EC 3.1.26.3) compare
GFF2515 -2.6 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF2073 -2.6 -3.1 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF1756 -2.6 -1.3 hypothetical protein compare
GFF2618 -2.6 -3.0 no description compare
GFF5896 -2.6 -1.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF982 -2.6 -15.0 Cell division protein ZapE compare
GFF6182 -2.6 -1.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF6305 -2.5 -13.7 Malate synthase G (EC 2.3.3.9) compare
GFF374 -2.5 -2.9 Transcription elongation factor GreA compare
GFF303 -2.5 -3.3 Probable transcriptional regulatory protein YebC compare
GFF6151 -2.5 -8.5 Transcriptional regulator, LysR family compare
GFF1900 -2.5 -4.5 Transcriptional regulator, LysR family compare
GFF126 -2.5 -3.8 Repressor homolog compare
GFF339 -2.5 -1.7 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF213 -2.4 -3.7 tmRNA-binding protein SmpB compare
GFF290 -2.4 -7.6 Cell division coordinator CpoB compare
GFF5339 -2.4 -2.4 Phospholipid ABC transporter-binding protein MlaB compare
GFF6322 -2.4 -9.8 Glutathione synthetase (EC 6.3.2.3) compare
GFF5876 -2.4 -3.3 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF6695 -2.4 -10.0 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF3510 -2.4 -1.8 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF2573 -2.4 -7.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF7294 -2.4 -2.3 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF1098 -2.4 -6.4 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
GFF3114 -2.4 -1.5 Methionine ABC transporter ATP-binding protein compare
GFF3082 -2.4 -4.5 hypothetical protein compare
GFF5523 -2.4 -1.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF5332 -2.3 -18.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF3067 -2.3 -3.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF2844 -2.3 -4.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF7321 -2.3 -0.9 Sensor histidine kinase GlrK compare
GFF6465 -2.3 -1.5 hypothetical protein compare
GFF445 -2.3 -4.1 Ferrichrome transport ATP-binding protein FhuC compare
GFF7231 -2.3 -1.6 no description compare
GFF2297 -2.3 -10.2 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF5333 -2.2 -1.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF5877 -2.2 -1.5 Probable proline rich signal peptide protein compare
GFF4626 -2.2 -3.6 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF3888 -2.2 -1.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3651 -2.2 -1.1 PTS system, IIA component compare
GFF6694 -2.2 -1.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF2481 -2.2 -1.1 Urease accessory protein UreF compare
GFF466 -2.2 -1.5 hypothetical protein compare
GFF272 -2.2 -1.2 thioesterase superfamily protein compare
GFF2230 -2.2 -2.1 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) compare
GFF5220 -2.2 -1.1 putative secreted oxidoreductase compare
GFF2463 -2.1 -1.0 Response regulator BaeR compare
GFF4142 -2.1 -1.8 no description compare
GFF561 -2.1 -6.3 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF143 -2.1 -1.8 Dethiobiotin synthase BioD (EC 6.3.3.3) compare
GFF7381 -2.1 -6.9 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
GFF7282 -2.1 -2.9 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
GFF487 -2.1 -9.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF219 -2.1 -4.2 GTP-binding protein TypA/BipA compare
GFF2572 -2.1 -8.8 Protein-export protein SecB (maintains pre-export unfolded state) compare
GFF4352 -2.1 -1.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF7289 -2.1 -1.5 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF1164 -2.1 -9.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF6127 -2.1 -7.6 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit compare
GFF6696 -2.1 -8.9 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF1535 -2.1 -2.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3227 -2.1 -2.1 no description compare
GFF1734 -2.1 -1.5 no description compare
GFF5769 -2.1 -1.9 Chemotaxis response - phosphatase CheZ compare
GFF5049 -2.1 -0.7 NAD-dependent protein deacetylase of SIR2 family compare
GFF273 -2.1 -8.0 Transcriptional regulator, Xre family compare
GFF6343 -2.1 -1.1 no description compare
GFF6986 -2.1 -0.9 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For complex community Community=guar; Passage=4 in Variovorax sp. SCN45

For complex community Community=guar; Passage=4 across organisms