Experiment set3S468 for Variovorax sp. SCN45

Community=arabino-guar; Passage=4

Group: complex community
Media: + Community=arabino-guar; Passage=4
Culturing: Variovorax_SCN45_ML2
By: Tom Hessler on 23-Oct-24

Specific Phenotypes

For 2 genes in this experiment

For complex community Community=arabino-guar; Passage=4 in Variovorax sp. SCN45

For complex community Community=arabino-guar; Passage=4 across organisms

SEED Subsystems

Subsystem	#Specific
ABC transporter branched-chain amino acid (TC 3.A.1.4.1)	1
Chitin and N-acetylglucosamine utilization	1
N-Acetyl-Galactosamine and Galactosamine Utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Other glycan degradation
• Nucleotide sugars metabolism
• Aminosugars metabolism
• Glycosaminoglycan degradation
• Glycosphingolipid biosynthesis - globo series
• Glycosphingolipid biosynthesis - ganglio series

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
chitin degradation II (Vibrio)	6	3	2
chitin degradation III (Serratia)	7	3	1
peptidoglycan recycling II	10	5	1
peptidoglycan recycling I	14	9	1