Experiment set3S466 for Variovorax sp. SCN45

Compare to:

Community=arabino-guar; Passage=4

200 most important genes:

  gene name fitness t score description  
GFF5512 -6.5 -4.5 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF6250 -5.8 -4.0 Glutamate--cysteine ligase-like protein YbdK compare
GFF5513 -5.8 -4.0 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF6107 -5.7 -2.3 Zinc transporter, ZIP family compare
GFF903 -5.7 -3.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF3957 -5.6 -2.3 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF946 -5.6 -2.9 Iron-sulfur cluster regulator IscR compare
GFF6249 -5.5 -3.8 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF936 -5.4 -3.7 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF5158 -5.4 -4.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF5669 -5.3 -1.1 hypothetical protein compare
GFF2128 -5.2 -7.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF2567 -5.2 -16.9 Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) compare
GFF902 -5.1 -9.2 Transcriptional regulator, AsnC family compare
GFF5509 -5.1 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF3089 -5.1 -2.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3425 -5.1 -1.8 no description compare
GFF1324 -5.1 -3.5 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF7043 -5.1 -2.1 Putative transmembrane protein compare
GFF1203 -5.0 -10.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF1204 -5.0 -6.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF3264 -5.0 -3.3 Methionine biosynthesis protein MetW compare
GFF7368 -4.9 -1.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3660 -4.9 -8.8 integral membrane sensor signal transduction histidine kinase compare
GFF4724 -4.9 -3.4 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF1187 -4.8 -4.7 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF3583 -4.8 -10.2 AMP nucleosidase (EC 3.2.2.4) compare
GFF2307 -4.7 -7.8 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF268 -4.6 -6.3 Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
GFF272 -4.6 -1.3 thioesterase superfamily protein compare
GFF5627 -4.6 -3.2 [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC) compare
GFF2239 -4.6 -0.9 no description compare
GFF20 -4.5 -1.6 hypothetical protein compare
GFF1188 -4.4 -2.3 Thiazole synthase (EC 2.8.1.10) compare
GFF934 -4.4 -9.0 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF2367 -4.4 -2.8 Transcriptional regulator, LysR family compare
GFF7221 -4.4 -2.3 Protein lysine acetyltransferase Pat (EC 2.3.1.-) compare
GFF7380 -4.4 -3.0 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF1683 -4.3 -0.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF1202 -4.3 -9.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF577 -4.3 -1.7 TolA protein compare
GFF576 -4.3 -2.4 Tol biopolymer transport system, TolR protein compare
GFF302 -4.3 -2.4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF6097 -4.2 -2.9 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149) compare
GFF5118 -4.2 -2.7 gluconolactonase family protein compare
GFF5156 -4.2 -21.4 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF4557 -4.1 -2.8 Dihydroorotase (EC 3.5.2.3) compare
GFF6512 -4.1 -1.6 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF680 -4.1 -1.2 RecA/RadA recombinase compare
GFF1542 -4.1 -1.9 Anti-sigma B factor RsbT / Phosphoserine phosphatase RsbX (EC 3.1.3.3) compare
GFF2112 -4.1 -1.8 no description compare
GFF270 -4.0 -18.3 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF2281 -4.0 -1.4 Short-chain dehydrogenase/reductase SDR compare
GFF3510 -3.9 -1.6 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF4112 -3.9 -0.8 Rhodanese-related sulfurtransferase, 4 domains compare
GFF292 -3.9 -9.7 Tol-Pal system beta propeller repeat protein TolB compare
GFF2572 -3.9 -13.8 Protein-export protein SecB (maintains pre-export unfolded state) compare
GFF2818 -3.8 -21.2 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
GFF3166 -3.8 -1.1 Transcriptional regulator, IclR family compare
GFF2111 -3.8 -1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF3050 -3.8 -1.1 Lactam utilization protein LamB compare
GFF966 -3.8 -2.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF2659 -3.7 -1.7 Electron transfer flavoprotein, alpha subunit compare
GFF4322 -3.7 -1.0 Acyl-CoA dehydrogenase compare
GFF1899 -3.7 -13.3 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits compare
GFF6028 -3.7 -11.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
GFF2573 -3.7 -9.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF575 -3.7 -2.5 Tol-Pal system protein TolQ compare
GFF3360 -3.7 -1.1 no description compare
GFF5666 -3.7 -2.5 Prevent host death protein, Phd antitoxin compare
GFF1451 -3.7 -3.2 FIG00456379: hypothetical protein compare
GFF2381 -3.6 -2.5 Ribonuclease PH (EC 2.7.7.56) compare
GFF1205 -3.6 -4.9 Oxidoreductase probably involved in sulfite reduction compare
GFF4825 -3.6 -4.5 SWIB/MDM2 domain-containing proteins compare
GFF3250 -3.6 -1.2 Barstar, ribonuclease (Barnase) inhibitor compare
GFF4482 -3.6 -2.8 Transcriptional regulator MraZ compare
GFF1206 -3.6 -8.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF4447 -3.6 -4.3 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF269 -3.6 -4.8 2-methylaconitate isomerase compare
GFF6397 -3.5 -1.2 LysR family transcriptional regulator PA2758 compare
GFF4847 -3.5 -1.0 Conjugative transfer protein TrbD compare
GFF570 -3.4 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
GFF5246 -3.4 -9.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF2139 -3.4 -1.7 Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
GFF4228 -3.4 -3.6 2-hydroxychromene-2-carboxylate isomerase compare
GFF3600 -3.4 -2.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF6328 -3.4 -0.7 LPS-assembly lipoprotein LptE compare
GFF4454 -3.4 -2.3 Exoribonuclease II (EC 3.1.13.1) compare
GFF3941 -3.4 -4.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF126 -3.4 -3.4 Repressor homolog compare
GFF1262 -3.4 -0.9 Rhodanese-related sulfurtransferase compare
GFF1829 -3.3 -0.9 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
GFF784 -3.3 -0.9 KEGG: RNA polymerase sigma-70 factor, ECF subfamily compare
GFF244 -3.3 -2.3 Cys regulon transcriptional activator CysB compare
GFF4064 -3.3 -1.3 no description compare
GFF243 -3.3 -4.5 Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3) compare
GFF291 -3.3 -3.2 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF3406 -3.3 -12.6 Benzoyl-CoA oxygenase component A compare
GFF5333 -3.2 -1.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF2987 -3.2 -6.0 CBS domain protein compare
GFF6246 -3.2 -2.2 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF2400 -3.1 -3.3 no description compare
GFF6168 -3.1 -0.9 Na(+) H(+) antiporter subunit G compare
GFF2847 -3.1 -1.4 histone-like nucleoid-structuring protein H-NS compare
GFF1539 -3.1 -2.4 RsbT co-antagonist protein RsbRA compare
GFF944 -3.1 -1.7 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF5065 -3.1 -1.8 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF2870 -3.1 -11.9 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) compare
GFF6770 -3.1 -5.0 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
GFF6161 -3.1 -1.1 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF4492 -3.1 -6.5 Protein of unknown function DUF484 compare
GFF3874 -3.0 -1.7 Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) compare
GFF6379 -3.0 -2.4 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF7381 -3.0 -9.9 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
GFF6151 -3.0 -7.7 Transcriptional regulator, LysR family compare
GFF4967 -3.0 -0.9 Glutathione S-transferase family protein compare
GFF4277 -3.0 -3.3 Small subunit naph/bph dioxygenase compare
GFF5491 -3.0 -2.1 Peptide deformylase (EC 3.5.1.88) compare
GFF5317 -3.0 -0.8 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF5739 -3.0 -0.8 Flagellar biosynthesis protein FliQ compare
GFF3525 -3.0 -3.2 Protein tyrosine/serine phosphatase compare
GFF6360 -3.0 -0.8 FIG00432660: hypothetical protein compare
GFF4626 -3.0 -5.2 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF5267 -3.0 -2.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF982 -3.0 -15.9 Cell division protein ZapE compare
GFF4119 -3.0 -0.8 no description compare
GFF2804 -3.0 -1.9 Membrane protein compare
GFF1957 -2.9 -2.0 no description compare
GFF2073 -2.9 -2.0 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF6127 -2.9 -10.0 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit compare
GFF5220 -2.9 -0.8 putative secreted oxidoreductase compare
GFF4288 -2.9 -4.2 Acyl-CoA dehydrogenase compare
GFF6378 -2.9 -1.2 Nicotinamidase (EC 3.5.1.19) compare
GFF4748 -2.9 -1.2 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF3377 -2.9 -0.6 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF3265 -2.9 -1.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF3905 -2.9 -5.2 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF310 -2.9 -2.8 FIG025233: SAM-dependent methyltransferases compare
GFF5372 -2.8 -2.8 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF290 -2.8 -7.6 Cell division coordinator CpoB compare
GFF2000 -2.8 -9.4 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) compare
GFF213 -2.8 -3.3 tmRNA-binding protein SmpB compare
GFF6696 -2.8 -9.0 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF317 -2.8 -2.1 Acyl carrier protein compare
GFF2273 -2.8 -2.2 Transcriptional regulator, AcrR family compare
GFF1900 -2.8 -6.2 Transcriptional regulator, LysR family compare
GFF2422 -2.7 -2.7 Polysaccharide deacetylase compare
GFF303 -2.7 -3.2 Probable transcriptional regulatory protein YebC compare
GFF3401 -2.7 -0.8 P-hydroxylaminobenzoate lyase compare
GFF1661 -2.7 -1.1 no description compare
GFF5843 -2.7 -1.6 hypothetical protein compare
GFF6194 -2.7 -1.9 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF1113 -2.7 -2.1 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF5746 -2.7 -1.5 Flagellar protein FliJ compare
GFF1322 -2.7 -12.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF408 -2.7 -1.1 Two-component system response regulator OmpR compare
GFF561 -2.6 -6.5 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF1782 -2.6 -3.0 integral membrane sensor signal transduction histidine kinase compare
GFF2300 -2.6 -7.2 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF3352 -2.6 -0.7 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF2843 -2.6 -7.0 Murein hydrolase activator NlpD compare
GFF2627 -2.6 -1.8 Chorismate synthase (EC 4.2.3.5) compare
GFF2164 -2.6 -5.9 Transcriptional regulator, IclR family compare
GFF5276 -2.5 -5.5 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) compare
GFF371 -2.5 -1.8 RNA-binding protein YhbY compare
GFF5324 -2.5 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
GFF4164 -2.5 -2.3 Thymidine phosphorylase (EC 2.4.2.4) compare
GFF2090 -2.5 -1.7 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF2714 -2.5 -3.8 2-ketogluconate utilization repressor PtxS compare
GFF1756 -2.5 -1.0 hypothetical protein compare
GFF1167 -2.5 -10.0 Predicted Lactate-responsive regulator, IclR family compare
GFF409 -2.5 -1.7 Osmolarity sensory histidine kinase EnvZ compare
GFF769 -2.5 -2.7 Conserved TM helix compare
GFF2523 -2.5 -1.3 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF4903 -2.5 -0.7 no description compare
GFF6047 -2.5 -3.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
GFF3422 -2.5 -2.4 Lipoprotein-related protein compare
GFF1246 -2.4 -2.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF3956 -2.4 -1.3 no description compare
GFF6129 -2.4 -2.9 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) compare
GFF3584 -2.4 -0.6 hypothetical protein compare
GFF2515 -2.4 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF6432 -2.4 -1.4 no description compare
GFF7289 -2.4 -1.4 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF2142 -2.4 -0.7 Glutathione S-transferase (EC 2.5.1.18) compare
GFF5896 -2.4 -1.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF2699 -2.4 -1.4 4Fe-4S ferredoxin, iron-sulfur binding compare
GFF3870 -2.4 -1.7 Ribonuclease III (EC 3.1.26.3) compare
GFF6182 -2.4 -1.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF6150 -2.4 -7.6 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF6368 -2.4 -1.2 T6SS lysozyme-like component TssE compare
GFF5876 -2.4 -1.6 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF7377 -2.4 -5.4 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
GFF497 -2.4 -5.4 Phytoene synthase (EC 2.5.1.32) compare
GFF7250 -2.3 -0.7 Putative transposase InsK for insertion sequence element IS150 compare
GFF6772 -2.3 -3.7 L-arabonate dehydratase (EC 4.2.1.25) compare
GFF4571 -2.3 -1.9 Acyl-CoA dehydrogenase family protein compare
GFF3034 -2.3 -0.8 no description compare
GFF7084 -2.3 -2.4 Mobile element protein compare
GFF5941 -2.3 -0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in complex community experiments

For complex community Community=arabino-guar; Passage=4 across organisms