Experiment set3S464 for Variovorax sp. SCN45

Compare to:

Community=Kojac gum; Passage=1

200 most important genes:

  gene name fitness t score description  
GFF3377 -2.9 -1.4 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF944 -2.3 -3.1 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF7289 -2.1 -1.8 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF2847 -2.1 -2.2 histone-like nucleoid-structuring protein H-NS compare
GFF431 -2.1 -2.7 Esterase/lipase compare
GFF5666 -2.0 -4.2 Prevent host death protein, Phd antitoxin compare
GFF3854 -1.9 -3.3 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF2627 -1.8 -3.3 Chorismate synthase (EC 4.2.3.5) compare
GFF409 -1.7 -4.5 Osmolarity sensory histidine kinase EnvZ compare
GFF1475 -1.7 -1.2 no description compare
GFF3114 -1.6 -2.5 Methionine ABC transporter ATP-binding protein compare
GFF5158 -1.5 -5.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF2179 -1.5 -3.0 hypothetical protein compare
GFF4462 -1.4 -0.8 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF372 -1.4 -2.5 PMID: 11481431 compare
GFF7370 -1.4 -1.9 PAS domain with LuxR-type DNA-binding domain compare
GFF7357 -1.4 -3.3 Phenylacetate ABC transporter, ATP-binding protein 1 compare
GFF5325 -1.3 -0.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF3510 -1.3 -1.5 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF5267 -1.3 -2.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2096 -1.3 -1.4 Acyl-CoA dehydrogenase family protein compare
GFF6015 -1.3 -2.5 Transcriptional regulator PA0877, LysR family compare
GFF1756 -1.3 -1.4 hypothetical protein compare
GFF5065 -1.3 -2.2 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF1106 -1.3 -1.4 UvrD/REP helicase compare
GFF168 -1.2 -5.5 MCP methyltransferase, CheR-type compare
GFF5491 -1.2 -3.4 Peptide deformylase (EC 3.5.1.88) compare
GFF4216 -1.2 -1.1 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF1649 -1.2 -3.1 hypothetical protein compare
GFF3888 -1.1 -3.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2515 -1.1 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF3841 -1.1 -2.0 Uncharacterized protein EC-HemX compare
GFF7255 -1.1 -1.6 BUG/TctC family periplasmic protein compare
GFF219 -1.1 -3.2 GTP-binding protein TypA/BipA compare
GFF2734 -1.1 -1.8 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF4626 -1.1 -2.8 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF1765 -1.1 -1.7 putative membrane protein compare
GFF2730 -1.0 -1.2 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF7210 -1.0 -2.3 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF2838 -1.0 -1.8 hypothetical protein compare
GFF6618 -1.0 -1.8 Mlr6156 protein compare
GFF2393 -1.0 -1.7 Biopolymer transport protein ExbD/TolR compare
GFF1105 -1.0 -1.6 Helicase compare
GFF6787 -1.0 -1.5 Copper tolerance protein compare
GFF5707 -1.0 -1.6 Transcriptional regulator, LysR family compare
GFF103 -1.0 -1.4 General secretion pathway protein E compare
GFF3986 -1.0 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF773 -1.0 -1.4 hypothetical protein compare
GFF577 -0.9 -1.9 TolA protein compare
GFF6475 -0.9 -2.1 hypothetical protein compare
GFF3790 -0.9 -1.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF3870 -0.9 -3.1 Ribonuclease III (EC 3.1.26.3) compare
GFF3653 -0.9 -7.0 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF4748 -0.9 -1.1 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF3152 -0.9 -2.4 hypothetical protein compare
GFF2631 -0.9 -1.7 Transcriptional regulator, ArsR family compare
GFF341 -0.9 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF1707 -0.9 -1.9 no description compare
GFF6161 -0.9 -1.1 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF6022 -0.9 -2.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF3974 -0.9 -2.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF2343 -0.9 -3.5 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF6704 -0.9 -1.7 no description compare
GFF3043 -0.9 -1.6 Response regulator BaeR compare
GFF7044 -0.9 -1.3 Inner membrane protein YedI compare
GFF6432 -0.8 -2.0 no description compare
GFF1865 -0.8 -2.2 Transcriptional regulator, AraC family compare
GFF23 -0.8 -1.1 no description compare
GFF3889 -0.8 -1.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5372 -0.8 -2.5 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF5458 -0.8 -2.3 D-erythronate dehydrogenase (NAD+) compare
GFF2481 -0.8 -0.9 Urease accessory protein UreF compare
GFF4106 -0.8 -1.4 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF7093 -0.8 -1.8 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
GFF1262 -0.8 -1.3 Rhodanese-related sulfurtransferase compare
GFF502 -0.8 -2.1 Hydrolase compare
GFF169 -0.8 -5.2 Protein-glutamate methylesterase (EC 3.1.1.61) compare
GFF2123 -0.8 -1.5 Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II compare
GFF3516 -0.8 -2.6 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF2344 -0.8 -2.0 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF4199 -0.8 -2.7 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
GFF6986 -0.8 -0.9 hypothetical protein compare
GFF6083 -0.8 -1.8 hypothetical protein PA3071 compare
GFF4663 -0.8 -0.7 no description compare
GFF3426 -0.8 -1.7 Predicted kinase compare
GFF1858 -0.8 -1.2 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF7294 -0.8 -1.9 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF6694 -0.8 -1.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF408 -0.8 -1.0 Two-component system response regulator OmpR compare
GFF4438 -0.8 -2.3 Sugar kinases, ribokinase family compare
GFF2139 -0.8 -1.1 Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
GFF5927 -0.8 -1.5 3-oxoacyl-[ACP] synthase compare
GFF198 -0.8 -2.6 Isochorismate pyruvate-lyase (EC 4.2.99.21) compare
GFF4005 -0.8 -2.1 hypothetical protein compare
GFF6434 -0.8 -1.4 Inner membrane protein YqiK compare
GFF1594 -0.8 -2.5 Antitoxin DinJ (binds YafQ toxin) compare
GFF2291 -0.7 -3.0 Nodulation protein N-related dehydratase compare
GFF1951 -0.7 -1.6 no description compare
GFF177 -0.7 -1.5 Glutamine ABC transporter, ATP-binding protein GlnQ compare
GFF6696 -0.7 -4.5 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF4684 -0.7 -1.7 Na+/H+ antiporter compare
GFF2715 -0.7 -2.5 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
GFF6101 -0.7 -2.2 Ser/Thr protein phosphatase family protein compare
GFF2708 -0.7 -1.0 no description compare
GFF6374 -0.7 -1.2 predicted 2-keto-3-deoxyxylonate dehydratase compare
GFF1047 -0.7 -4.9 hypothetical protein compare
GFF7189 -0.7 -1.7 dioxygenase, TauD/TfdA family compare
GFF6121 -0.7 -1.5 FIG003461: hypothetical protein compare
GFF3649 -0.7 -3.9 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF4142 -0.7 -1.7 no description compare
GFF694 -0.7 -1.4 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-) compare
GFF3743 -0.7 -5.7 Twitching motility protein PilT compare
GFF966 -0.7 -3.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF4305 -0.7 -0.8 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF3052 -0.7 -2.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
GFF2329 -0.7 -1.0 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF6891 -0.7 -1.7 Phenazine biosynthesis protein PhzF like compare
GFF7277 -0.7 -2.1 Mobile element protein compare
GFF2142 -0.7 -1.0 Glutathione S-transferase (EC 2.5.1.18) compare
GFF7199 -0.7 -2.0 Alkanesulfonates-binding protein compare
GFF2109 -0.7 -1.4 FIG00454067: hypothetical protein compare
GFF6231 -0.7 -1.8 Amidases related to nicotinamidase compare
GFF4167 -0.7 -1.9 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF6868 -0.7 -2.5 SAM-dependent methyltransferase compare
GFF6343 -0.7 -1.5 no description compare
GFF489 -0.7 -0.8 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF4228 -0.7 -1.7 2-hydroxychromene-2-carboxylate isomerase compare
GFF5619 -0.7 -2.7 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF5843 -0.7 -1.5 hypothetical protein compare
GFF2247 -0.7 -1.7 hypothetical protein compare
GFF2111 -0.7 -1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF1782 -0.7 -2.6 integral membrane sensor signal transduction histidine kinase compare
GFF5901 -0.7 -2.4 no description compare
GFF339 -0.7 -1.4 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF4625 -0.7 -2.4 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF2526 -0.7 -2.7 no description compare
GFF4132 -0.7 -1.7 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
GFF2381 -0.7 -1.9 Ribonuclease PH (EC 2.7.7.56) compare
GFF3206 -0.7 -1.2 no description compare
GFF291 -0.6 -3.3 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF988 -0.6 -3.4 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) compare
GFF4710 -0.6 -1.1 MutT/Nudix family protein compare
GFF7207 -0.6 -2.3 no description compare
GFF3514 -0.6 -1.8 no description compare
GFF5688 -0.6 -1.5 Transcriptional regulator, LysR family compare
GFF3569 -0.6 -1.0 Organic hydroperoxide resistance protein compare
GFF4571 -0.6 -2.2 Acyl-CoA dehydrogenase family protein compare
GFF4482 -0.6 -1.4 Transcriptional regulator MraZ compare
GFF6018 -0.6 -2.3 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
GFF5958 -0.6 -1.4 FIG00537018: hypothetical protein compare
GFF1535 -0.6 -1.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF7059 -0.6 -1.0 Zinc uptake regulation protein Zur compare
GFF884 -0.6 -1.6 BUG/TctC family periplasmic protein compare
GFF3226 -0.6 -1.3 no description compare
GFF7222 -0.6 -1.1 Coenzyme F390 synthetase compare
GFF20 -0.6 -1.1 hypothetical protein compare
GFF3425 -0.6 -1.1 no description compare
GFF6163 -0.6 -1.3 hypothetical protein compare
GFF3943 -0.6 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
GFF1948 -0.6 -1.6 Phage integrase compare
GFF521 -0.6 -2.7 Secretion protein HlyD precursor compare
GFF2307 -0.6 -3.3 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF6030 -0.6 -2.1 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF6221 -0.6 -0.5 T6SS associated component TagF (ImpM) compare
GFF6455 -0.6 -1.4 Bll3817 protein compare
GFF2815 -0.6 -1.4 Primosomal replication protein N compare
GFF4156 -0.6 -1.6 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF3173 -0.6 -1.4 Transcriptional regulator, IclR family compare
GFF3053 -0.6 -1.3 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
GFF12 -0.6 -1.5 Two-component system sensor histidine kinase compare
GFF7253 -0.6 -1.6 Mobile element protein compare
GFF1519 -0.6 -2.8 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
GFF6695 -0.6 -3.7 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF1474 -0.6 -1.0 Transcriptional regulator, LysR family compare
GFF5475 -0.6 -1.6 Uncharacterized MFS-type transporter compare
GFF6570 -0.6 -1.0 hypothetical protein compare
GFF6515 -0.6 -1.6 no description compare
GFF1013 -0.6 -0.6 hypothetical protein compare
GFF3166 -0.6 -0.9 Transcriptional regulator, IclR family compare
GFF2844 -0.6 -2.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF2853 -0.6 -1.7 DNA-binding protein HU-beta compare
GFF239 -0.6 -0.3 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF3547 -0.6 -1.8 no description compare
GFF2100 -0.6 -0.7 no description compare
GFF5523 -0.6 -1.0 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF6250 -0.5 -3.8 Glutamate--cysteine ligase-like protein YbdK compare
GFF2326 -0.5 -1.5 Transcriptional regulator, LysR family compare
GFF2002 -0.5 -1.8 Thioredoxin related protein PA2694 compare
GFF6040 -0.5 -2.0 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
GFF2227 -0.5 -1.6 Tricarboxylate transport protein TctC compare
GFF1734 -0.5 -0.6 no description compare
GFF2090 -0.5 -1.2 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF6966 -0.5 -1.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
GFF4447 -0.5 -2.9 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF3658 -0.5 -1.6 hypothetical protein compare
GFF1025 -0.5 -2.3 Chromate transport protein ChrA compare
GFF3705 -0.5 -0.8 Amidases related to nicotinamidase compare
GFF6386 -0.5 -2.8 6-hydroxynicotinate reductase (EC 1.3.7.1) compare
GFF4092 -0.5 -1.1 Copper tolerance protein compare
GFF6100 -0.5 -1.6 no description compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in complex community experiments

For complex community Community=Kojac gum; Passage=1 across organisms