Experiment set3S458 for Variovorax sp. SCN45

Compare to:

Community=Locust bean gum; Passage=1

200 most important genes:

  gene name fitness t score description  
GFF3250 -4.2 -2.9 Barstar, ribonuclease (Barnase) inhibitor compare
GFF431 -3.2 -3.1 Esterase/lipase compare
GFF3352 -2.6 -1.7 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF408 -2.2 -2.0 Two-component system response regulator OmpR compare
GFF6328 -1.9 -1.3 LPS-assembly lipoprotein LptE compare
GFF1105 -1.9 -1.8 Helicase compare
GFF1475 -1.9 -1.7 no description compare
GFF4903 -1.9 -1.5 no description compare
GFF4748 -1.8 -2.1 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF1256 -1.7 -1.4 Probable NADH dehydrogenase/NAD(P)H nitroreductase compare
GFF5158 -1.7 -5.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF2627 -1.7 -3.0 Chorismate synthase (EC 4.2.3.5) compare
GFF2515 -1.7 -2.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF1106 -1.7 -1.9 UvrD/REP helicase compare
GFF5267 -1.7 -3.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1756 -1.6 -1.6 hypothetical protein compare
GFF143 -1.6 -2.5 Dethiobiotin synthase BioD (EC 6.3.3.3) compare
GFF5739 -1.5 -1.5 Flagellar biosynthesis protein FliQ compare
GFF3229 -1.5 -2.8 hypothetical protein compare
GFF23 -1.5 -1.6 no description compare
GFF3888 -1.4 -3.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF1600 -1.4 -2.0 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) compare
GFF371 -1.4 -2.2 RNA-binding protein YhbY compare
GFF3889 -1.4 -1.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF6694 -1.3 -2.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF3854 -1.3 -2.7 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF7250 -1.3 -1.2 Putative transposase InsK for insertion sequence element IS150 compare
GFF3227 -1.3 -2.1 no description compare
GFF2341 -1.2 -1.3 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF3952 -1.2 -2.4 LSU ribosomal protein L19p compare
GFF3890 -1.2 -1.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF5919 -1.2 -1.2 KEGG: type VI secretion system secreted protein Hcp compare
GFF7361 -1.1 -3.7 Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI) compare
GFF2050 -1.1 -1.6 hypothetical protein compare
GFF6986 -1.1 -1.2 hypothetical protein compare
GFF6293 -1.1 -2.5 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF372 -1.1 -2.7 PMID: 11481431 compare
GFF3569 -1.1 -1.5 Organic hydroperoxide resistance protein compare
GFF6695 -1.0 -6.7 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF3841 -1.0 -2.1 Uncharacterized protein EC-HemX compare
GFF1230 -1.0 -2.8 Malic enzyme compare
GFF2734 -1.0 -2.0 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF169 -1.0 -6.1 Protein-glutamate methylesterase (EC 3.1.1.61) compare
GFF5798 -1.0 -1.9 hypothetical protein compare
GFF1971 -1.0 -2.1 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF773 -1.0 -1.4 hypothetical protein compare
GFF2307 -1.0 -6.2 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF2715 -1.0 -2.3 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
GFF5839 -1.0 -2.1 no description compare
GFF4107 -1.0 -1.5 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF4142 -1.0 -2.3 no description compare
GFF6966 -1.0 -2.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
GFF3653 -1.0 -7.6 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1681 -1.0 -2.0 Methylisocitrate lyase (EC 4.1.3.30) compare
GFF339 -0.9 -1.8 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF4164 -0.9 -2.3 Thymidine phosphorylase (EC 2.4.2.4) compare
GFF1529 -0.9 -1.3 Transcriptional regulator, AcrR family compare
GFF4432 -0.9 -4.4 Two-component system response regulator protein compare
GFF5700 -0.9 -1.2 UPF0758 family protein compare
GFF7335 -0.9 -1.1 no description compare
GFF6121 -0.9 -1.9 FIG003461: hypothetical protein compare
GFF2838 -0.9 -1.6 hypothetical protein compare
GFF643 -0.9 -1.3 no description compare
GFF2568 -0.9 -1.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF5666 -0.9 -2.0 Prevent host death protein, Phd antitoxin compare
GFF2913 -0.9 -2.2 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF409 -0.9 -3.0 Osmolarity sensory histidine kinase EnvZ compare
GFF1474 -0.9 -1.2 Transcriptional regulator, LysR family compare
GFF3790 -0.9 -1.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF5383 -0.9 -2.3 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF5325 -0.9 -0.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF5721 -0.9 -1.9 Flagellar L-ring protein FlgH compare
GFF3649 -0.9 -4.6 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF5324 -0.9 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
GFF966 -0.8 -4.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF2380 -0.8 -3.1 Protein phosphatase 2C-like compare
GFF219 -0.8 -2.8 GTP-binding protein TypA/BipA compare
GFF4708 -0.8 -1.3 Transcriptional regulator RSp1267, LysR family compare
GFF4334 -0.8 -2.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF2273 -0.8 -2.7 Transcriptional regulator, AcrR family compare
GFF1782 -0.8 -2.6 integral membrane sensor signal transduction histidine kinase compare
GFF7239 -0.8 -1.9 Repair of Iron Centers di-iron protein compare
GFF1192 -0.8 -2.2 no description compare
GFF3960 -0.8 -4.8 3'-to-5' oligoribonuclease (orn) compare
GFF2342 -0.8 -2.7 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF4560 -0.8 -1.1 hypothetical protein compare
GFF7345 -0.8 -0.9 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
GFF2191 -0.8 -1.6 Pca operon transcriptional activator PcaQ compare
GFF3369 -0.8 -1.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF3114 -0.8 -1.2 Methionine ABC transporter ATP-binding protein compare
GFF7393 -0.8 -1.9 Mobile element protein compare
GFF5914 -0.8 -1.1 hypothetical protein compare
GFF2179 -0.8 -1.9 hypothetical protein compare
GFF5762 -0.8 -1.2 Flagellar motor rotation protein MotB compare
GFF6022 -0.8 -2.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF4285 -0.8 -1.3 Tricarboxylate transport protein TctC compare
GFF1682 -0.8 -2.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF7016 -0.8 -1.4 FAD-dependent oxidoreductase compare
GFF3140 -0.8 -1.7 no description compare
GFF2381 -0.8 -1.0 Ribonuclease PH (EC 2.7.7.56) compare
GFF3743 -0.7 -5.7 Twitching motility protein PilT compare
GFF944 -0.7 -1.4 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF1559 -0.7 -1.0 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF7289 -0.7 -0.9 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF2109 -0.7 -1.8 FIG00454067: hypothetical protein compare
GFF6700 -0.7 -1.0 Single-stranded-DNA-specific exonuclease RecJ compare
GFF5412 -0.7 -2.3 no description compare
GFF3975 -0.7 -2.8 Metal-dependent hydrolase compare
GFF6862 -0.7 -2.7 Two-component system sensor histidine kinase compare
GFF6455 -0.7 -1.8 Bll3817 protein compare
GFF2142 -0.7 -1.0 Glutathione S-transferase (EC 2.5.1.18) compare
GFF5720 -0.7 -1.1 Flagellar basal-body rod protein FlgG compare
GFF1113 -0.7 -0.9 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF7206 -0.7 -1.2 no description compare
GFF302 -0.7 -1.4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF2320 -0.7 -1.5 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
GFF1482 -0.7 -2.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF2637 -0.7 -1.2 no description compare
GFF2297 -0.7 -5.5 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF6696 -0.7 -4.7 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF6249 -0.7 -3.1 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF7248 -0.7 -1.4 no description compare
GFF3160 -0.7 -1.6 Transcriptional regulator YeiE, LysR family compare
GFF1573 -0.7 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF3825 -0.7 -2.3 Autolysin sensor kinase (EC 2.7.3.-) compare
GFF7058 -0.7 -2.6 Zinc-binding GTPase YciC compare
GFF291 -0.7 -3.4 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF168 -0.7 -3.2 MCP methyltransferase, CheR-type compare
GFF4687 -0.7 -3.0 no description compare
GFF5896 -0.7 -2.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF6083 -0.7 -1.3 hypothetical protein PA3071 compare
GFF3514 -0.6 -1.6 no description compare
GFF5367 -0.6 -2.4 GTP cyclohydrolase 1 type 2 homolog YbgI compare
GFF2300 -0.6 -4.1 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF21 -0.6 -1.4 no description compare
GFF6351 -0.6 -2.4 T6SS associated component TagF (ImpM) compare
GFF4482 -0.6 -1.8 Transcriptional regulator MraZ compare
GFF6459 -0.6 -2.7 Two-component transcriptional regulatory protein BasR/PmrA (activated by BasS/PmrB) compare
GFF6250 -0.6 -4.2 Glutamate--cysteine ligase-like protein YbdK compare
GFF5937 -0.6 -1.5 T6SS component TssG (ImpH/VasB) compare
GFF7184 -0.6 -1.6 hypothetical protein compare
GFF4454 -0.6 -3.1 Exoribonuclease II (EC 3.1.13.1) compare
GFF272 -0.6 -1.5 thioesterase superfamily protein compare
GFF5372 -0.6 -1.6 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF2344 -0.6 -1.6 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF717 -0.6 -0.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF2008 -0.6 -4.4 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
GFF7059 -0.6 -1.0 Zinc uptake regulation protein Zur compare
GFF6995 -0.6 -1.4 Flagellar M-ring protein FliF compare
GFF2298 -0.6 -5.6 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF962 -0.6 -3.2 FIG00932012: hypothetical protein compare
GFF4991 -0.6 -1.0 Polyhydroxyalkanoate granule-associated protein PhaF compare
GFF7014 -0.6 -2.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
GFF1780 -0.6 -2.4 hypothetical protein compare
GFF2186 -0.6 -1.9 no description compare
GFF2123 -0.6 -1.1 Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II compare
GFF2926 -0.6 -2.8 FIG00349048: hypothetical protein compare
GFF2086 -0.6 -0.7 hypothetical protein compare
GFF466 -0.6 -1.4 hypothetical protein compare
GFF3384 -0.6 -1.4 Transcriptional regulator, Crp/Fnr family compare
GFF3038 -0.6 -1.8 hypothetical protein compare
GFF2921 -0.6 -3.2 D-galactarate dehydratase (EC 4.2.1.42) compare
GFF5310 -0.6 -3.7 Cytochrome c4 compare
GFF3826 -0.6 -3.5 Response regulator receiver:LytTr DNA-binding region compare
GFF6432 -0.6 -1.3 no description compare
GFF7295 -0.6 -1.0 HPr kinase/phosphorylase compare
GFF510 -0.6 -1.4 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF239 -0.6 -0.3 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6833 -0.6 -2.9 FIG00432169: hypothetical protein compare
GFF2680 -0.6 -0.9 Protein of unknown function DUF1058 compare
GFF5156 -0.6 -5.1 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF4000 -0.6 -1.7 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF2302 -0.6 -3.8 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF2974 -0.6 -1.6 Cell division inhibitor compare
GFF7093 -0.6 -1.4 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
GFF1858 -0.6 -0.9 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF3651 -0.6 -0.7 PTS system, IIA component compare
GFF177 -0.6 -1.0 Glutamine ABC transporter, ATP-binding protein GlnQ compare
GFF3864 -0.6 -1.8 Sigma factor RpoE negative regulatory protein RseA compare
GFF7006 -0.6 -2.6 Flagellar biosynthesis protein FliR compare
GFF2025 -0.6 -2.3 Uncharacterized protein SCO3165 compare
GFF33 -0.6 -3.9 Type IV pilus biogenesis protein PilZ compare
GFF4585 -0.6 -1.8 hypothetical protein compare
GFF2137 -0.6 -2.7 Ribose operon repressor compare
GFF3173 -0.6 -0.9 Transcriptional regulator, IclR family compare
GFF275 -0.6 -1.4 FIG00349534: hypothetical protein compare
GFF819 -0.6 -1.3 Uncharacterized protein CC_2099 compare
GFF2385 -0.6 -2.2 no description compare
GFF6932 -0.6 -1.3 no description compare
GFF5523 -0.6 -1.0 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF993 -0.6 -4.3 Type IV pilus biogenesis protein PilF compare
GFF1047 -0.6 -3.9 hypothetical protein compare
GFF1875 -0.6 -1.0 no description compare
GFF4490 -0.6 -2.6 Site-specific tyrosine recombinase XerC compare
GFF2224 -0.6 -1.1 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF6100 -0.5 -1.8 no description compare
GFF5843 -0.5 -1.2 hypothetical protein compare
GFF807 -0.5 -1.5 FIG00003370: Multicopper polyphenol oxidase compare
GFF3426 -0.5 -1.0 Predicted kinase compare
GFF3347 -0.5 -2.0 Adenylate cyclase (EC 4.6.1.1) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in complex community experiments

For complex community Community=Locust bean gum; Passage=1 across organisms