Experiment set3S458 for Variovorax sp. SCN45

Compare to:

Community=Locust bean gum; Passage=1

200 most detrimental genes:

  gene name fitness t score description  
GFF1429 +1.2 2.6 no description compare
GFF4766 +1.2 2.1 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 compare
GFF6555 +1.2 2.3 no description compare
GFF5734 +1.0 2.4 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF3377 +1.0 1.1 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF5701 +1.0 2.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF6358 +0.9 1.4 T6SS protein serine/threonine phosphatase PppA compare
GFF122 +0.9 2.8 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) compare
GFF1434 +0.9 3.1 hypothetical protein compare
GFF5424 +0.9 2.0 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF5738 +0.9 3.0 Flagellar biosynthesis protein FliR compare
GFF4112 +0.9 1.3 Rhodanese-related sulfurtransferase, 4 domains compare
GFF2096 +0.8 1.9 Acyl-CoA dehydrogenase family protein compare
GFF1598 +0.8 1.8 no description compare
GFF3241 +0.8 2.2 hypothetical protein compare
GFF4265 +0.8 2.0 hypothetical protein compare
GFF4063 +0.8 2.1 Cytochrome c family protein compare
GFF6971 +0.8 1.6 no description compare
GFF6465 +0.8 1.5 hypothetical protein compare
GFF2262 +0.8 1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF3715 +0.7 1.7 Probable malonic semialdehyde reductase RutE (EC 1.1.1.298) compare
GFF821 +0.7 2.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF3043 +0.7 2.0 Response regulator BaeR compare
GFF5988 +0.7 1.2 Sensory histidine kinase BaeS compare
GFF862 +0.7 1.8 hypothetical protein compare
GFF1830 +0.7 1.7 TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 compare
GFF6360 +0.7 1.5 FIG00432660: hypothetical protein compare
GFF441 +0.7 3.4 no description compare
GFF3517 +0.7 3.3 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF2949 +0.7 0.8 no description compare
GFF4817 +0.7 2.2 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF1426 +0.7 3.0 Phenylacetate ABC transporter, ATP-binding protein 2 compare
GFF4187 +0.7 1.8 hypothetical protein compare
GFF3772 +0.7 1.6 Arginase (EC 3.5.3.1) compare
GFF5980 +0.7 3.0 Cyanate hydratase (EC 4.2.1.104) compare
GFF4710 +0.7 1.1 MutT/Nudix family protein compare
GFF3835 +0.7 2.0 ADP-ribosylglycohydrolase family protein compare
GFF3510 +0.7 0.9 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF7267 +0.7 1.7 L-talarate dehydratase @ Galactarate dehydratase (EC 4.2.1.42) compare
GFF3925 +0.7 1.4 hypothetical protein compare
GFF6805 +0.7 2.1 FIG00821908: hypothetical protein compare
GFF4815 +0.7 2.9 Glucose-fructose oxidoreductase (EC 1.1.99.28) compare
GFF3327 +0.6 2.7 RidA/YER057c/UK114 superfamily, group 1 compare
GFF6353 +0.6 2.0 T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain compare
GFF6161 +0.6 1.2 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF1683 +0.6 1.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF1742 +0.6 0.9 hypothetical protein compare
GFF5941 +0.6 0.9 hypothetical protein compare
GFF7188 +0.6 2.1 Uncharacterized methyltransferase PA1407 compare
GFF1060 +0.6 1.3 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF7265 +0.6 3.0 hypothetical protein, not 6-phosphogluconolactonase compare
GFF2938 +0.6 2.3 Rieske (2Fe-2S) domain protein compare
GFF5333 +0.6 1.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3767 +0.6 1.1 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases compare
GFF2104 +0.6 1.3 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) compare
GFF2560 +0.6 2.4 FIG00932643: hypothetical protein compare
GFF4033 +0.6 1.4 no description compare
GFF3438 +0.6 1.4 Amidohydrolase family protein compare
GFF7238 +0.6 1.1 no description compare
GFF6174 +0.6 1.2 Fluoride ion transporter CrcB compare
GFF44 +0.6 1.1 hypothetical protein compare
GFF4163 +0.6 2.0 Phosphopentomutase (EC 5.4.2.7) compare
GFF1441 +0.6 1.7 putative membrane protein compare
GFF6359 +0.6 2.7 FIG01219766: hypothetical protein compare
GFF2599 +0.6 2.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF7251 +0.6 1.1 Mobile element protein compare
GFF3064 +0.6 2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF6996 +0.6 0.8 Flagellar hook-basal body complex protein FliE compare
GFF1708 +0.6 2.5 no description compare
GFF1416 +0.6 1.7 no description compare
GFF6813 +0.6 1.2 no description compare
GFF3401 +0.6 0.6 P-hydroxylaminobenzoate lyase compare
GFF618 +0.6 0.8 Lactoylglutathione lyase and related lyases compare
GFF1435 +0.5 2.6 BUG/TctC family periplasmic protein compare
GFF1375 +0.5 1.9 Transcriptional regulator, LysR family compare
GFF1198 +0.5 2.8 no description compare
GFF6961 +0.5 2.1 Cytochrome c oxidase (cbb3-type) subunit CcoP (EC 1.9.3.1) compare
GFF2489 +0.5 1.6 hypothetical protein compare
GFF5841 +0.5 0.7 Auxin efflux carrier family protein compare
GFF5756 +0.5 1.2 KEGG: flagellar protein FliT compare
GFF6958 +0.5 2.1 no description compare
GFF1672 +0.5 1.8 BUG/TctC family periplasmic protein compare
GFF4014 +0.5 2.3 Transcriptional regulator, ArsR family compare
GFF2951 +0.5 1.6 Arsenate reductase (EC 1.20.4.1) glutaredoxin-coupled, glutaredoxin-like family compare
GFF5614 +0.5 1.3 hypothetical protein compare
GFF7212 +0.5 0.9 Nitrilotriacetate monooxygenase [FMNH2] compare
GFF5049 +0.5 0.8 NAD-dependent protein deacetylase of SIR2 family compare
GFF646 +0.5 1.0 no description compare
GFF1789 +0.5 1.5 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF6592 +0.5 1.8 hypothetical protein compare
GFF2688 +0.5 0.8 Glutamine ABC transporter, substrate-binding protein GlnH compare
GFF3830 +0.5 2.3 Uncharacterized MFS-type transporter compare
GFF2112 +0.5 1.5 no description compare
GFF6950 +0.5 1.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF3576 +0.5 1.1 no description compare
GFF1539 +0.5 1.0 RsbT co-antagonist protein RsbRA compare
GFF2952 +0.5 2.6 Arsenic resistance protein ArsH compare
GFF125 +0.5 2.0 Dihydroorotase (EC 3.5.2.3) compare
GFF3013 +0.5 1.7 KEGG: type VI secretion system secreted protein Hcp compare
GFF2692 +0.5 1.8 hypothetical protein compare
GFF4218 +0.5 1.7 no description compare
GFF4222 +0.5 1.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF1265 +0.5 1.1 cAMP-binding protein compare
GFF5301 +0.5 1.8 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF3036 +0.5 1.4 no description compare
GFF1432 +0.5 1.6 no description compare
GFF6008 +0.5 1.5 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2248 +0.5 2.3 Transcriptional regulatory protein RtcR compare
GFF3480 +0.5 2.2 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF2192 +0.5 1.5 FIG00932626: hypothetical protein compare
GFF396 +0.5 1.1 hypothetical protein compare
GFF2585 +0.5 2.1 no description compare
GFF6357 +0.5 1.9 T6SS forkhead associated domain protein ImpI/VasC compare
GFF2107 +0.5 1.2 no description compare
GFF6449 +0.5 2.2 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) compare
GFF4851 +0.5 3.6 Coupling protein VirD4, ATPase required for T-DNA transfer compare
GFF6165 +0.5 2.0 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF7216 +0.5 1.0 hypothetical protein compare
GFF6980 +0.5 1.7 Mobile element protein compare
GFF5815 +0.5 0.9 Uncharacterized MFS-type transporter compare
GFF4718 +0.5 2.0 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF6440 +0.5 1.3 Molybdate-binding domain of ModE compare
GFF4804 +0.5 0.8 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE compare
GFF3177 +0.5 1.0 hypothetical protein compare
GFF5795 +0.5 1.9 esterase, PHB depolymerase family compare
GFF4947 +0.5 2.8 Erythritol kinase EryA (EC 2.7.1.27) compare
GFF2540 +0.5 2.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
GFF3776 +0.5 1.9 no description compare
GFF6206 +0.5 1.6 Transcriptional regulator, GntR family compare
GFF2528 +0.5 1.2 ABC transporter, ATP-binding protein PA3838 compare
GFF2436 +0.5 1.6 no description compare
GFF3039 +0.5 1.2 Two-component transcriptional response regulator, LuxR family compare
GFF2281 +0.4 0.6 Short-chain dehydrogenase/reductase SDR compare
GFF423 +0.4 1.4 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
GFF344 +0.4 1.7 no description compare
GFF3135 +0.4 2.5 no description compare
GFF4886 +0.4 1.7 hypothetical protein compare
GFF3693 +0.4 2.4 Oxidoreductase compare
GFF3976 +0.4 1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF6989 +0.4 0.9 Flagellar basal-body rod modification protein FlgD compare
GFF2991 +0.4 1.9 BUG/TctC family periplasmic protein compare
GFF6597 +0.4 1.7 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
GFF2784 +0.4 2.0 Peptidase, M20/M25/M40 family compare
GFF4310 +0.4 1.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF4119 +0.4 0.8 no description compare
GFF1603 +0.4 0.8 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF4192 +0.4 0.7 no description compare
GFF5769 +0.4 1.9 Chemotaxis response - phosphatase CheZ compare
GFF6011 +0.4 1.9 putative decarboxylase compare
GFF4313 +0.4 1.8 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF1721 +0.4 1.5 no description compare
GFF4156 +0.4 1.7 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF4574 +0.4 2.0 BUG/TctC family periplasmic protein compare
GFF4087 +0.4 1.7 Cystathionine beta-lyase (EC 4.4.1.8) compare
GFF1348 +0.4 2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF1572 +0.4 1.6 Transcriptional regulator, LysR family compare
GFF3450 +0.4 2.0 Transcriptional regulator, LacI family compare
GFF6200 +0.4 2.5 integral membrane sensor signal transduction histidine kinase compare
GFF3042 +0.4 2.5 hypothetical protein compare
GFF5742 +0.4 0.8 Flagellar motor switch protein FliN compare
GFF7130 +0.4 1.1 Mobile element protein compare
GFF3402 +0.4 1.2 no description compare
GFF4217 +0.4 1.4 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) compare
GFF6467 +0.4 1.2 Nucleoside-diphosphate-sugar epimerases compare
GFF1415 +0.4 1.7 Lactoylglutathione lyase and related lyases compare
GFF6111 +0.4 1.6 Oligopeptide ABC transporter, ATP-binding protein OppF (TC 3.A.1.5.1) compare
GFF6225 +0.4 2.4 ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates) compare
GFF3746 +0.4 2.0 Probable NADH dehydrogenase/NAD(P)H nitroreductase compare
GFF4198 +0.4 2.3 putative LuxA compare
GFF5777 +0.4 1.5 5-keto-D-gluconate 5-reductase (EC 1.1.1.69) compare
GFF4867 +0.4 1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF6936 +0.4 1.9 ABC transporter, ATP-binding protein compare
GFF7337 +0.4 1.4 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF6959 +0.4 0.6 Putative analog of CcoH, COG3198 compare
GFF7221 +0.4 1.2 Protein lysine acetyltransferase Pat (EC 2.3.1.-) compare
GFF5917 +0.4 1.7 T6SS component TssB (ImpB/VipA) compare
GFF4933 +0.4 1.8 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
GFF2422 +0.4 1.3 Polysaccharide deacetylase compare
GFF5819 +0.4 1.1 no description compare
GFF7245 +0.4 0.9 universal stress protein, UspA family compare
GFF685 +0.4 1.3 Tricarboxylate transport protein TctC compare
GFF7362 +0.4 1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3445 +0.4 0.8 Cupin 2, conserved barrel compare
GFF3624 +0.4 2.9 Putative transmembrane protein compare
GFF2394 +0.4 1.5 MotA/TolQ/ExbB proton channel family protein compare
GFF3466 +0.4 1.2 FIG00932805: hypothetical protein compare
GFF4037 +0.4 2.5 CzcABC family efflux RND transporter, transmembrane protein compare
GFF3904 +0.4 1.0 Probable signal peptide protein compare
GFF1421 +0.4 2.0 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF1420 +0.4 2.3 Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8) compare
GFF8 +0.4 2.0 RND efflux system, outer membrane lipoprotein, NodT family compare
GFF5920 +0.4 2.1 no description compare
GFF7378 +0.4 0.6 protein of unknown function DUF1311 compare
GFF2364 +0.4 1.8 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
GFF2664 +0.4 1.2 FIG002343: hypothetical protein compare
GFF2398 +0.4 0.9 Uncharacterized MFS-type transporter compare
GFF1470 +0.4 1.2 Putative transposase InsK for insertion sequence element IS150 compare
GFF4210 +0.4 0.8 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
GFF6437 +0.4 2.2 no description compare
GFF6397 +0.4 0.9 LysR family transcriptional regulator PA2758 compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in complex community experiments

For complex community Community=Locust bean gum; Passage=1 across organisms