Experiment set3S376 for Bacteroides ovatus ATCC 8483

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse4; day8

Group: mouse mixed community
Media: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
Culturing: Bovatus_ATCC8483_ML6
By: Saria on 5/20/25

Specific Phenotypes

For 10 genes in this experiment

For mouse mixed community diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm in Bacteroides ovatus ATCC 8483

For mouse mixed community diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms

SEED Subsystems

Subsystem	#Specific
Cysteine Biosynthesis	2
L-rhamnose utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Porphyrin and chlorophyll metabolism
• Carotenoid biosynthesis - General
• Alkaloid biosynthesis I
• Insect hormone biosynthesis
• Ubiquinone and menaquinone biosynthesis
• Purine metabolism
• Puromycin biosynthesis
• Histidine metabolism
• Tyrosine metabolism
• Tryptophan metabolism
• Benzoxazinone biosynthesis
• Selenoamino acid metabolism
• Nucleotide sugars metabolism
• alpha-Linolenic acid metabolism
• Naphthalene and anthracene degradation
• Trinitrotoluene degradation
• Sulfur metabolism
• Phenylpropanoid biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Biosynthesis of alkaloids derived from shikimate pathway

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
sulfate activation for sulfonation	2	2	1
assimilatory sulfate reduction II	3	1	1
assimilatory sulfate reduction III	3	1	1
sulfite oxidation III	3	1	1
assimilatory sulfate reduction I	4	2	1
assimilatory sulfate reduction IV	4	2	1
selenate reduction	5	2	1
dissimilatory sulfate reduction I (to hydrogen sufide))	5	1	1
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens)	6	1	1
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans)	6	1	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	7	1
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae)	10	5	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	9	1
superpathway of sulfide oxidation (phototrophic sulfur bacteria)	12	2	1
superpathway of seleno-compound metabolism	19	5	1