Experiment set3S376 for Phocaeicola dorei CL03T12C01

Compare to:

Beta-Lactose 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04695 -5.9 -7.4 shikimate kinase compare
ABI39_RS19930 -5.7 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS11835 -5.4 -5.3 histidinol dehydrogenase compare
ABI39_RS02975 -5.4 -9.6 argininosuccinate synthase compare
ABI39_RS04685 -5.3 -6.3 acetylglutamate kinase compare
ABI39_RS02870 -5.2 -6.7 acetylornithine carbamoyltransferase compare
ABI39_RS11840 -5.2 -5.0 histidinol-phosphate transaminase compare
ABI39_RS07005 -5.1 -6.3 type II 3-dehydroquinate dehydratase compare
ABI39_RS19925 -5.1 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS07095 -5.0 -19.7 argininosuccinate lyase compare
ABI39_RS07790 -5.0 -9.5 M20 family metallo-hydrolase compare
ABI39_RS20070 -4.8 -8.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS02970 -4.8 -10.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02880 -4.6 -10.0 glutamate 5-kinase compare
ABI39_RS10435 -4.6 -11.8 cofactor-independent phosphoglycerate mutase compare
ABI39_RS04245 -4.5 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS11830 -4.4 -5.2 ATP phosphoribosyltransferase compare
ABI39_RS10640 -4.4 -14.2 serine dehydratase subunit alpha family protein compare
ABI39_RS21075 -4.4 -6.7 tryptophan synthase subunit alpha compare
ABI39_RS05660 -4.3 -10.3 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS14465 -4.3 -10.8 hypothetical protein compare
ABI39_RS21065 -4.2 -7.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12645 -4.2 -19.1 chorismate synthase compare
ABI39_RS21045 -4.1 -7.1 tryptophan synthase subunit beta compare
ABI39_RS10505 -4.1 -10.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS11405 -4.1 -9.8 hypothetical protein compare
ABI39_RS11845 -4.1 -7.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS02875 -4.0 -9.6 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02960 -4.0 -12.3 pyrroline-5-carboxylate reductase compare
ABI39_RS12665 -4.0 -7.5 shikimate dehydrogenase compare
ABI39_RS12720 -3.9 -13.4 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS19935 -3.9 -7.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS16910 -3.9 -10.0 3-phosphoglycerate dehydrogenase compare
ABI39_RS10495 -3.9 -9.3 prephenate dehydrogenase compare
ABI39_RS02980 -3.8 -8.1 N-acetyltransferase compare
ABI39_RS04795 -3.8 -2.0 M28 family peptidase compare
ABI39_RS16905 -3.8 -11.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS19385 -3.8 -3.7 hypothetical protein compare
ABI39_RS21060 -3.7 -10.0 anthranilate phosphoribosyltransferase compare
ABI39_RS10430 -3.7 -15.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS00205 -3.7 -3.6 phosphoglucosamine mutase compare
ABI39_RS10510 -3.7 -10.1 prephenate dehydratase compare
ABI39_RS10440 -3.7 -9.1 threonine synthase compare
ABI39_RS12735 -3.7 -8.7 ketol-acid reductoisomerase compare
ABI39_RS06055 -3.6 -8.9 phosphoribosylamine--glycine ligase compare
ABI39_RS01415 -3.5 -3.4 branched-chain amino acid aminotransferase compare
ABI39_RS10500 -3.4 -5.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS06670 -3.4 -12.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS06380 -3.4 -9.2 GH3 auxin-responsive promoter family protein compare
ABI39_RS00405 -3.3 -23.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS19950 -3.3 -5.5 diaminopimelate decarboxylase compare
ABI39_RS10260 -3.3 -11.3 adenylosuccinate synthase compare
ABI39_RS02470 -3.3 -5.0 ATP-dependent DNA helicase RecG compare
ABI39_RS11650 -3.3 -11.9 galactokinase compare
ABI39_RS12715 -3.3 -11.0 dihydroxy-acid dehydratase compare
ABI39_RS02315 -3.2 -11.8 IMP dehydrogenase compare
ABI39_RS10215 -3.2 -12.4 3-isopropylmalate dehydrogenase compare
ABI39_RS17150 -3.1 -2.1 hypothetical protein compare
ABI39_RS09575 -3.1 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS00475 -3.1 -7.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS21050 -3.0 -7.1 anthranilate synthase component I family protein compare
ABI39_RS13835 -3.0 -3.3 DUF3037 domain-containing protein compare
ABI39_RS12675 -3.0 -7.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS09670 -2.9 -2.6 cardiolipin synthase compare
ABI39_RS04280 -2.8 -4.7 DUF4292 domain-containing protein compare
ABI39_RS10200 -2.8 -13.3 3-isopropylmalate dehydratase large subunit compare
ABI39_RS08185 -2.8 -7.3 hemolysin III family protein compare
ABI39_RS10650 -2.8 -15.4 AraC family transcriptional regulator compare
ABI39_RS10205 -2.8 -5.1 3-isopropylmalate dehydratase small subunit compare
ABI39_RS14030 -2.8 -3.7 MFS transporter compare
ABI39_RS20090 -2.8 -7.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS06675 -2.8 -9.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS18745 -2.8 -5.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS15265 -2.6 -2.5 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS17140 -2.6 -2.5 AAA family ATPase compare
ABI39_RS17420 -2.6 -8.9 serine hydroxymethyltransferase compare
ABI39_RS06165 -2.5 -1.0 GtrA family protein compare
ABI39_RS08035 -2.4 -2.3 adenylosuccinate lyase compare
ABI39_RS02755 -2.4 -1.7 glycosyltransferase compare
ABI39_RS16315 -2.4 -1.2 conjugative transposon protein TraK compare
ABI39_RS04860 -2.4 -4.0 HigA family addiction module antidote protein compare
ABI39_RS16895 -2.4 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS22955 -2.4 -3.3 hypothetical protein compare
ABI39_RS17175 -2.4 -5.2 tetratricopeptide repeat protein compare
ABI39_RS14715 -2.4 -5.0 RidA family protein compare
ABI39_RS10210 -2.3 -12.3 2-isopropylmalate synthase compare
ABI39_RS16885 -2.3 -2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS10195 -2.2 -8.8 2-isopropylmalate synthase compare
ABI39_RS04970 -2.2 -4.6 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS15410 -2.2 -7.9 DUF4296 domain-containing protein compare
ABI39_RS02500 -2.2 -8.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS14560 -2.1 -2.7 aspartate 1-decarboxylase compare
ABI39_RS15320 -2.1 -10.6 PorT family protein compare
ABI39_RS04700 -2.1 -3.4 type I DNA topoisomerase compare
ABI39_RS00090 -2.1 -4.9 HAMP domain-containing histidine kinase compare
ABI39_RS20095 -2.1 -7.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS00515 -2.0 -3.4 hypothetical protein compare
ABI39_RS20105 -2.0 -6.4 Fe-S cluster domain-containing protein compare
ABI39_RS17160 -2.0 -1.9 VWA domain-containing protein compare
ABI39_RS02480 -2.0 -3.3 DJ-1/PfpI family protein compare
ABI39_RS00770 -2.0 -12.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12435 -2.0 -7.8 GNAT family N-acetyltransferase compare
ABI39_RS02965 -2.0 -11.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS08480 -1.9 -1.2 histidine kinase compare
ABI39_RS17950 -1.9 -2.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS13185 -1.9 -1.3 manganese efflux pump compare
ABI39_RS02290 -1.9 -3.6 hypothetical protein compare
ABI39_RS20220 -1.9 -2.2 DNA-binding protein compare
ABI39_RS04885 -1.9 -3.4 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS17170 -1.8 -1.8 protein BatD compare
ABI39_RS13180 -1.8 -3.2 FAD:protein FMN transferase compare
ABI39_RS02350 -1.8 -4.2 ABC transporter permease compare
ABI39_RS02140 -1.8 -1.7 TetR/AcrR family transcriptional regulator compare
ABI39_RS04690 -1.8 -5.6 biosynthetic arginine decarboxylase compare
ABI39_RS12670 -1.8 -4.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS16245 -1.8 -1.5 DUF3408 domain-containing protein compare
ABI39_RS09245 -1.8 -7.1 cardiolipin synthase compare
ABI39_RS02055 -1.7 -4.1 BamA/TamA family outer membrane protein compare
ABI39_RS19945 -1.7 -7.2 aspartate kinase compare
ABI39_RS11635 -1.7 -6.1 NUDIX hydrolase compare
ABI39_RS16880 -1.7 -3.1 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS11485 -1.7 -4.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS18910 -1.7 -1.3 preprotein translocase subunit YajC compare
ABI39_RS04230 -1.7 -5.4 RNA polymerase factor sigma-54 compare
ABI39_RS05280 -1.7 -9.0 S41 family peptidase compare
ABI39_RS12805 -1.6 -2.9 hypothetical protein compare
ABI39_RS22740 -1.6 -1.2 IS66 family insertion sequence element accessory protein TnpB compare
ABI39_RS12725 -1.6 -3.9 acetolactate synthase small subunit compare
ABI39_RS20085 -1.6 -4.6 electron transport complex subunit E compare
ABI39_RS06010 -1.6 -5.6 polysaccharide deacetylase family protein compare
ABI39_RS00410 -1.6 -3.5 response regulator compare
ABI39_RS11660 -1.6 -6.4 galactose mutarotase compare
ABI39_RS00760 -1.6 -1.7 YjgP/YjgQ family permease compare
ABI39_RS20080 -1.5 -5.5 electron transport complex subunit RsxA compare
ABI39_RS10870 -1.5 -6.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS12770 -1.5 -2.7 hypothetical protein compare
ABI39_RS09845 -1.5 -2.8 (d)CMP kinase compare
ABI39_RS11505 -1.5 -1.0 YccF domain-containing protein compare
ABI39_RS09195 -1.4 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS16235 -1.4 -3.5 hypothetical protein compare
ABI39_RS20965 -1.4 -1.9 SPOR domain-containing protein compare
ABI39_RS06250 -1.4 -7.1 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS03340 -1.4 -1.7 ATP-dependent Clp protease adaptor ClpS compare
ABI39_RS17965 -1.4 -2.8 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS16515 -1.4 -2.7 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS16875 -1.4 -2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS20930 -1.4 -8.1 tetratricopeptide repeat protein compare
ABI39_RS11655 -1.3 -0.9 MFS transporter compare
ABI39_RS09230 -1.3 -1.6 hypothetical protein compare
ABI39_RS16870 -1.3 -2.7 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS20100 -1.3 -4.8 electron transport complex subunit RsxC compare
ABI39_RS01300 -1.3 -7.6 NADP-specific glutamate dehydrogenase compare
ABI39_RS07090 -1.3 -0.6 hypothetical protein compare
ABI39_RS02355 -1.3 -4.1 ABC transporter ATP-binding protein compare
ABI39_RS12755 -1.3 -2.3 SurA N-terminal domain-containing protein compare
ABI39_RS09685 -1.3 -1.4 hypothetical protein compare
ABI39_RS02060 -1.2 -4.3 translocation/assembly module TamB domain-containing protein compare
ABI39_RS15415 -1.2 -2.6 hypothetical protein compare
ABI39_RS21955 -1.2 -0.7 DUF4133 domain-containing protein compare
ABI39_RS05550 -1.2 -1.2 TIGR00730 family Rossman fold protein compare
ABI39_RS15840 -1.2 -3.3 hypothetical protein compare
ABI39_RS08135 -1.2 -1.5 YicC family protein compare
ABI39_RS10085 -1.2 -2.7 enoyl-ACP reductase compare
ABI39_RS20110 -1.1 -2.1 SoxR reducing system RseC family protein compare
ABI39_RS10110 -1.1 -7.1 S9 family peptidase compare
ABI39_RS15710 -1.1 -1.2 hypothetical protein compare
ABI39_RS13755 -1.1 -1.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12975 -1.1 -3.7 flippase-like domain-containing protein compare
ABI39_RS12960 -1.1 -4.3 NDP-sugar synthase compare
ABI39_RS12955 -1.1 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS20050 -1.1 -3.9 lipocalin-like domain-containing protein compare
ABI39_RS16980 -1.1 -2.0 helix-turn-helix transcriptional regulator compare
ABI39_RS14480 -1.1 -4.9 ferrous iron transport protein B compare
ABI39_RS17195 -1.1 -5.4 hypothetical protein compare
ABI39_RS03050 -1.1 -8.4 DUF4981 domain-containing protein conserved
ABI39_RS21850 -1.1 -1.9 ATP-binding protein compare
ABI39_RS05805 -1.1 -1.7 class IIb bacteriocin, lactobin A/cerein 7B family compare
ABI39_RS12150 -1.0 -2.1 hotdog fold thioesterase compare
ABI39_RS04145 -1.0 -1.1 transcription elongation factor GreA compare
ABI39_RS11350 -1.0 -2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS03565 -1.0 -1.8 hypothetical protein compare
ABI39_RS22175 -1.0 -0.8 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS07000 -1.0 -2.2 site-specific tyrosine recombinase XerD compare
ABI39_RS08720 -1.0 -1.3 DUF1896 domain-containing protein compare
ABI39_RS19075 -1.0 -2.0 hypothetical protein compare
ABI39_RS18330 -1.0 -5.6 PD40 domain-containing protein compare
ABI39_RS00315 -1.0 -2.4 DUF1573 domain-containing protein compare
ABI39_RS16520 -1.0 -4.3 endopeptidase La compare
ABI39_RS06990 -1.0 -6.4 DUF4369 domain-containing protein compare
ABI39_RS01360 -1.0 -3.9 hypothetical protein compare
ABI39_RS20705 -1.0 -2.2 hypothetical protein compare
ABI39_RS02475 -1.0 -2.3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
ABI39_RS07815 -1.0 -3.0 RNA polymerase sigma factor compare
ABI39_RS21190 -0.9 -1.8 dihydrodipicolinate synthase family protein compare
ABI39_RS19870 -0.9 -0.9 hypothetical protein compare
ABI39_RS10250 -0.9 -2.2 DNA alkylation repair protein compare
ABI39_RS21470 -0.9 -6.0 hypothetical protein compare
ABI39_RS21350 -0.9 -1.6 aspartate--ammonia ligase compare
ABI39_RS20075 -0.9 -2.0 hypothetical protein compare
ABI39_RS18490 -0.9 -1.2 helix-turn-helix domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Beta-Lactose in Phocaeicola dorei CL03T12C01

For carbon source Beta-Lactose across organisms