Experiment set3S374 for Phocaeicola dorei CL03T12C01

Compare to:

D-Raffinose pentahydrate 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02870 -7.5 -8.9 acetylornithine carbamoyltransferase compare
ABI39_RS02980 -6.7 -9.8 N-acetyltransferase compare
ABI39_RS21065 -6.5 -9.7 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS07790 -6.5 -10.8 M20 family metallo-hydrolase compare
ABI39_RS02970 -6.4 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS07005 -6.3 -8.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS21075 -6.3 -7.3 tryptophan synthase subunit alpha compare
ABI39_RS12665 -6.2 -7.3 shikimate dehydrogenase compare
ABI39_RS19935 -6.0 -10.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10260 -5.9 -11.1 adenylosuccinate synthase compare
ABI39_RS16910 -5.9 -11.9 3-phosphoglycerate dehydrogenase compare
ABI39_RS07095 -5.8 -18.8 argininosuccinate lyase compare
ABI39_RS21060 -5.8 -8.8 anthranilate phosphoribosyltransferase compare
ABI39_RS04695 -5.8 -6.3 shikimate kinase compare
ABI39_RS02875 -5.8 -10.4 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10495 -5.4 -9.1 prephenate dehydrogenase compare
ABI39_RS02975 -5.4 -10.8 argininosuccinate synthase compare
ABI39_RS10640 -5.3 -14.0 serine dehydratase subunit alpha family protein compare
ABI39_RS04685 -5.2 -6.5 acetylglutamate kinase compare
ABI39_RS08220 -5.2 -18.8 TonB-dependent receptor compare
ABI39_RS12715 -5.2 -14.6 dihydroxy-acid dehydratase compare
ABI39_RS10505 -5.2 -11.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS11830 -5.2 -5.0 ATP phosphoribosyltransferase compare
ABI39_RS21045 -5.2 -7.0 tryptophan synthase subunit beta compare
ABI39_RS12720 -5.1 -15.4 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS19950 -4.9 -3.4 diaminopimelate decarboxylase compare
ABI39_RS11845 -4.9 -8.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS00475 -4.9 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS00405 -4.9 -21.0 phosphoribosylformylglycinamidine synthase compare
ABI39_RS11840 -4.7 -6.5 histidinol-phosphate transaminase compare
ABI39_RS08240 -4.7 -14.7 substrate-binding domain-containing protein compare
ABI39_RS12645 -4.7 -16.3 chorismate synthase compare
ABI39_RS02960 -4.7 -11.8 pyrroline-5-carboxylate reductase compare
ABI39_RS11835 -4.7 -7.1 histidinol dehydrogenase compare
ABI39_RS10435 -4.6 -12.2 cofactor-independent phosphoglycerate mutase compare
ABI39_RS19385 -4.6 -4.5 hypothetical protein compare
ABI39_RS10205 -4.6 -5.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS16905 -4.6 -14.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10510 -4.6 -12.2 prephenate dehydratase compare
ABI39_RS04245 -4.6 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS12735 -4.5 -9.5 ketol-acid reductoisomerase compare
ABI39_RS19925 -4.5 -10.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10500 -4.4 -6.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS02315 -4.4 -12.9 IMP dehydrogenase compare
ABI39_RS21050 -4.3 -6.7 anthranilate synthase component I family protein compare
ABI39_RS05660 -4.3 -9.4 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10200 -4.2 -13.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS02880 -4.2 -13.9 glutamate 5-kinase compare
ABI39_RS06055 -4.2 -10.5 phosphoribosylamine--glycine ligase compare
ABI39_RS04795 -4.1 -2.8 M28 family peptidase compare
ABI39_RS19930 -4.1 -8.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS17420 -4.1 -8.4 serine hydroxymethyltransferase compare
ABI39_RS12675 -4.0 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS04280 -4.0 -5.4 DUF4292 domain-containing protein compare
ABI39_RS10215 -3.9 -16.2 3-isopropylmalate dehydrogenase compare
ABI39_RS10430 -3.9 -16.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS10440 -3.8 -9.0 threonine synthase compare
ABI39_RS09845 -3.8 -3.7 (d)CMP kinase compare
ABI39_RS10195 -3.8 -8.8 2-isopropylmalate synthase compare
ABI39_RS10210 -3.8 -14.2 2-isopropylmalate synthase compare
ABI39_RS01360 -3.8 -9.3 hypothetical protein compare
ABI39_RS00205 -3.7 -3.6 phosphoglucosamine mutase compare
ABI39_RS06380 -3.7 -9.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS18745 -3.6 -5.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS06995 -3.6 -9.3 tetratricopeptide repeat protein compare
ABI39_RS12955 -3.5 -8.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS08195 -3.5 -6.5 hypothetical protein compare
ABI39_RS01415 -3.5 -3.4 branched-chain amino acid aminotransferase compare
ABI39_RS00770 -3.4 -14.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS09575 -3.4 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS20090 -3.2 -7.8 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS11405 -3.2 -10.8 hypothetical protein compare
ABI39_RS18330 -3.2 -12.5 PD40 domain-containing protein compare
ABI39_RS08305 -3.2 -7.6 DUF4831 family protein compare
ABI39_RS10110 -3.1 -13.1 S9 family peptidase compare
ABI39_RS13185 -3.1 -2.5 manganese efflux pump compare
ABI39_RS21350 -3.1 -2.9 aspartate--ammonia ligase compare
ABI39_RS08035 -3.0 -2.1 adenylosuccinate lyase compare
ABI39_RS09245 -3.0 -11.0 cardiolipin synthase compare
ABI39_RS17140 -3.0 -2.8 AAA family ATPase compare
ABI39_RS20100 -2.9 -10.6 electron transport complex subunit RsxC compare
ABI39_RS02965 -2.9 -15.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06250 -2.9 -11.3 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS14560 -2.9 -4.3 aspartate 1-decarboxylase compare
ABI39_RS06670 -2.9 -14.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS17950 -2.9 -3.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS20085 -2.9 -8.0 electron transport complex subunit E compare
ABI39_RS01300 -2.9 -10.4 NADP-specific glutamate dehydrogenase compare
ABI39_RS13180 -2.9 -3.9 FAD:protein FMN transferase compare
ABI39_RS17150 -2.9 -3.8 hypothetical protein compare
ABI39_RS08235 -2.8 -9.5 carbohydrate kinase compare
ABI39_RS12770 -2.8 -4.2 hypothetical protein compare
ABI39_RS06010 -2.8 -7.2 polysaccharide deacetylase family protein compare
ABI39_RS07090 -2.8 -1.9 hypothetical protein compare
ABI39_RS04690 -2.8 -11.0 biosynthetic arginine decarboxylase compare
ABI39_RS02755 -2.8 -1.9 glycosyltransferase compare
ABI39_RS17170 -2.8 -1.9 protein BatD compare
ABI39_RS02500 -2.8 -12.8 pyridoxine 5'-phosphate synthase compare
ABI39_RS14465 -2.7 -9.3 hypothetical protein compare
ABI39_RS10650 -2.7 -14.5 AraC family transcriptional regulator compare
ABI39_RS20070 -2.7 -9.2 UDP-glucose 4-epimerase GalE compare
ABI39_RS10870 -2.7 -14.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS14715 -2.7 -7.3 RidA family protein compare
ABI39_RS20095 -2.7 -9.8 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS17175 -2.7 -5.8 tetratricopeptide repeat protein compare
ABI39_RS15410 -2.7 -6.5 DUF4296 domain-containing protein compare
ABI39_RS09850 -2.7 -5.0 energy transducer TonB compare
ABI39_RS17160 -2.6 -1.8 VWA domain-containing protein compare
ABI39_RS04860 -2.6 -2.1 HigA family addiction module antidote protein compare
ABI39_RS06675 -2.6 -8.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS15320 -2.6 -10.8 PorT family protein compare
ABI39_RS17315 -2.6 -13.0 alpha amylase C-terminal domain-containing protein compare
ABI39_RS04885 -2.5 -3.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS19945 -2.5 -9.6 aspartate kinase compare
ABI39_RS05175 -2.5 -8.0 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS08225 -2.5 -7.1 GH32 C-terminal domain-containing protein compare
ABI39_RS14230 -2.4 -14.9 alpha-amylase compare
ABI39_RS00760 -2.4 -2.7 YjgP/YjgQ family permease compare
ABI39_RS19920 -2.4 -7.5 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS08230 -2.4 -9.5 MFS transporter compare
ABI39_RS15415 -2.4 -5.6 hypothetical protein compare
ABI39_RS14225 -2.3 -10.1 glycosyltransferase compare
ABI39_RS08185 -2.3 -7.0 hemolysin III family protein compare
ABI39_RS20105 -2.3 -7.1 Fe-S cluster domain-containing protein compare
ABI39_RS20080 -2.3 -6.5 electron transport complex subunit RsxA compare
ABI39_RS05280 -2.2 -12.2 S41 family peptidase compare
ABI39_RS11485 -2.2 -5.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS12965 -2.2 -6.9 hypothetical protein compare
ABI39_RS14030 -2.1 -5.9 MFS transporter compare
ABI39_RS03625 -2.1 -6.8 type I methionyl aminopeptidase compare
ABI39_RS09670 -2.0 -2.9 cardiolipin synthase compare
ABI39_RS04970 -2.0 -4.9 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS06115 -1.9 -9.4 phosphatase PAP2 family protein compare
ABI39_RS12980 -1.9 -4.0 HAD family hydrolase compare
ABI39_RS16875 -1.9 -3.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS02350 -1.9 -6.6 ABC transporter permease compare
ABI39_RS18300 -1.9 -7.9 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS04700 -1.9 -3.1 type I DNA topoisomerase compare
ABI39_RS00515 -1.8 -3.1 hypothetical protein compare
ABI39_RS09195 -1.8 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS12725 -1.8 -2.5 acetolactate synthase small subunit compare
ABI39_RS12755 -1.8 -2.9 SurA N-terminal domain-containing protein compare
ABI39_RS01735 -1.8 -8.3 acyl-CoA dehydrogenase family protein compare
ABI39_RS22955 -1.8 -3.9 hypothetical protein compare
ABI39_RS12995 -1.8 -9.7 inositol-3-phosphate synthase compare
ABI39_RS17945 -1.7 -9.8 glutamine synthetase III compare
ABI39_RS11940 -1.7 -10.2 saccharopine dehydrogenase family protein compare
ABI39_RS09230 -1.7 -2.4 hypothetical protein compare
ABI39_RS12970 -1.7 -5.7 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS02985 -1.7 -4.7 arginine repressor compare
ABI39_RS15265 -1.7 -2.6 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS04730 -1.7 -2.1 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS12960 -1.6 -6.7 NDP-sugar synthase compare
ABI39_RS00410 -1.6 -3.6 response regulator compare
ABI39_RS12150 -1.6 -4.1 hotdog fold thioesterase compare
ABI39_RS19845 -1.6 -1.8 hypothetical protein compare
ABI39_RS12945 -1.6 -4.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS16695 -1.6 -7.1 carbon-nitrogen hydrolase compare
ABI39_RS20965 -1.6 -2.6 SPOR domain-containing protein compare
ABI39_RS02060 -1.6 -5.2 translocation/assembly module TamB domain-containing protein compare
ABI39_RS17730 -1.5 -7.4 carboxynorspermidine decarboxylase compare
ABI39_RS16870 -1.5 -3.1 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS05450 -1.5 -3.7 redox-regulated ATPase YchF compare
ABI39_RS06920 -1.5 -4.7 glycosyltransferase compare
ABI39_RS17195 -1.5 -9.3 hypothetical protein compare
ABI39_RS04930 -1.5 -5.3 helix-turn-helix transcriptional regulator compare
ABI39_RS01730 -1.4 -4.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS11655 -1.4 -1.4 MFS transporter compare
ABI39_RS03425 -1.4 -11.1 alpha-galactosidase compare
ABI39_RS09855 -1.4 -2.2 polyprenyl synthetase family protein compare
ABI39_RS07420 -1.4 -3.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS20175 -1.4 -3.1 translation elongation factor 4 compare
ABI39_RS14255 -1.4 -3.5 DUF452 family protein compare
ABI39_RS20930 -1.3 -8.8 tetratricopeptide repeat protein compare
ABI39_RS02140 -1.3 -1.6 TetR/AcrR family transcriptional regulator compare
ABI39_RS02470 -1.3 -4.0 ATP-dependent DNA helicase RecG compare
ABI39_RS02495 -1.3 -7.3 MotA/TolQ/ExbB proton channel family protein compare
ABI39_RS16895 -1.3 -2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS02055 -1.2 -3.7 BamA/TamA family outer membrane protein compare
ABI39_RS11545 -1.2 -6.2 hypothetical protein compare
ABI39_RS17465 -1.2 -7.0 DUF3078 domain-containing protein compare
ABI39_RS04145 -1.2 -1.7 transcription elongation factor GreA compare
ABI39_RS02355 -1.2 -5.2 ABC transporter ATP-binding protein compare
ABI39_RS14220 -1.2 -5.3 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS03880 -1.2 -8.4 PDZ domain-containing protein compare
ABI39_RS00090 -1.2 -3.5 HAMP domain-containing histidine kinase compare
ABI39_RS17320 -1.2 -1.8 YhcH/YjgK/YiaL family protein compare
ABI39_RS11650 -1.1 -6.2 galactokinase compare
ABI39_RS01655 -1.1 -7.1 methylmalonyl-CoA mutase compare
ABI39_RS09515 -1.1 -1.9 nucleoside deaminase compare
ABI39_RS01650 -1.1 -5.8 methylmalonyl-CoA mutase small subunit compare
ABI39_RS15610 -1.1 -1.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS16385 -1.1 -2.4 hypothetical protein compare
ABI39_RS08135 -1.1 -1.1 YicC family protein compare
ABI39_RS02485 -1.1 -3.8 TonB family protein compare
ABI39_RS20860 -1.1 -1.5 HU family DNA-binding protein compare
ABI39_RS02480 -1.1 -2.1 DJ-1/PfpI family protein compare
ABI39_RS03465 -1.0 -8.7 response regulator compare
ABI39_RS06060 -1.0 -3.5 S9 family peptidase compare
ABI39_RS02490 -1.0 -4.4 biopolymer transporter ExbD compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Raffinose pentahydrate in Phocaeicola dorei CL03T12C01

For carbon source D-Raffinose pentahydrate across organisms