Experiment set3S373 for Phocaeicola dorei CL03T12C01

Compare to:

D-Raffinose pentahydrate 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04685 -7.4 -8.8 acetylglutamate kinase compare
ABI39_RS02980 -7.3 -10.0 N-acetyltransferase compare
ABI39_RS21060 -6.7 -10.2 anthranilate phosphoribosyltransferase compare
ABI39_RS02970 -6.7 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02870 -6.5 -9.4 acetylornithine carbamoyltransferase compare
ABI39_RS21065 -6.4 -8.3 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS12665 -6.0 -8.3 shikimate dehydrogenase compare
ABI39_RS16910 -5.8 -12.9 3-phosphoglycerate dehydrogenase compare
ABI39_RS02315 -5.7 -10.9 IMP dehydrogenase compare
ABI39_RS07790 -5.5 -9.2 M20 family metallo-hydrolase compare
ABI39_RS16905 -5.5 -15.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS02975 -5.5 -12.1 argininosuccinate synthase compare
ABI39_RS10260 -5.5 -11.5 adenylosuccinate synthase compare
ABI39_RS07095 -5.4 -20.4 argininosuccinate lyase compare
ABI39_RS21075 -5.4 -8.6 tryptophan synthase subunit alpha compare
ABI39_RS02880 -5.4 -12.9 glutamate 5-kinase compare
ABI39_RS10500 -5.4 -5.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS19935 -5.4 -8.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10510 -5.3 -12.3 prephenate dehydratase compare
ABI39_RS02960 -5.3 -13.6 pyrroline-5-carboxylate reductase compare
ABI39_RS07005 -5.2 -10.0 type II 3-dehydroquinate dehydratase compare
ABI39_RS08220 -5.2 -19.8 TonB-dependent receptor compare
ABI39_RS10640 -5.2 -13.4 serine dehydratase subunit alpha family protein compare
ABI39_RS08240 -5.1 -16.7 substrate-binding domain-containing protein compare
ABI39_RS11835 -5.0 -6.8 histidinol dehydrogenase compare
ABI39_RS21045 -5.0 -6.8 tryptophan synthase subunit beta compare
ABI39_RS12645 -5.0 -18.0 chorismate synthase compare
ABI39_RS12715 -4.9 -14.7 dihydroxy-acid dehydratase compare
ABI39_RS12720 -4.9 -15.7 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS11830 -4.8 -5.7 ATP phosphoribosyltransferase compare
ABI39_RS11845 -4.8 -9.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS11840 -4.7 -6.5 histidinol-phosphate transaminase compare
ABI39_RS12675 -4.7 -7.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS04245 -4.7 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS00405 -4.7 -23.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS00475 -4.6 -9.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS19925 -4.6 -9.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS04695 -4.4 -8.0 shikimate kinase compare
ABI39_RS10495 -4.4 -9.2 prephenate dehydrogenase compare
ABI39_RS13185 -4.3 -2.9 manganese efflux pump compare
ABI39_RS06055 -4.3 -10.3 phosphoribosylamine--glycine ligase compare
ABI39_RS19930 -4.3 -4.9 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS17420 -4.3 -9.2 serine hydroxymethyltransferase compare
ABI39_RS04795 -4.2 -2.9 M28 family peptidase compare
ABI39_RS10505 -4.2 -11.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12735 -4.2 -7.0 ketol-acid reductoisomerase compare
ABI39_RS05660 -4.1 -11.8 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS00205 -4.1 -4.0 phosphoglucosamine mutase compare
ABI39_RS19385 -4.1 -4.8 hypothetical protein compare
ABI39_RS10205 -4.1 -7.9 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02875 -4.0 -10.3 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS22955 -4.0 -4.8 hypothetical protein compare
ABI39_RS06380 -4.0 -11.4 GH3 auxin-responsive promoter family protein compare
ABI39_RS19950 -4.0 -6.0 diaminopimelate decarboxylase compare
ABI39_RS10435 -3.9 -11.3 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10215 -3.9 -14.0 3-isopropylmalate dehydrogenase compare
ABI39_RS10430 -3.8 -18.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS21050 -3.8 -9.0 anthranilate synthase component I family protein compare
ABI39_RS18745 -3.8 -5.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS01360 -3.8 -9.6 hypothetical protein compare
ABI39_RS10200 -3.7 -13.2 3-isopropylmalate dehydratase large subunit compare
ABI39_RS02965 -3.7 -14.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10440 -3.7 -11.2 threonine synthase compare
ABI39_RS09845 -3.6 -4.2 (d)CMP kinase compare
ABI39_RS01415 -3.6 -3.5 branched-chain amino acid aminotransferase compare
ABI39_RS09575 -3.5 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS17140 -3.5 -2.4 AAA family ATPase compare
ABI39_RS20080 -3.4 -9.3 electron transport complex subunit RsxA compare
ABI39_RS11405 -3.4 -13.4 hypothetical protein compare
ABI39_RS19985 -3.4 -2.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10195 -3.3 -10.0 2-isopropylmalate synthase compare
ABI39_RS04885 -3.3 -2.3 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS04700 -3.3 -5.0 type I DNA topoisomerase compare
ABI39_RS02140 -3.3 -3.3 TetR/AcrR family transcriptional regulator compare
ABI39_RS14560 -3.3 -3.8 aspartate 1-decarboxylase compare
ABI39_RS10210 -3.2 -12.7 2-isopropylmalate synthase compare
ABI39_RS10650 -3.2 -15.8 AraC family transcriptional regulator compare
ABI39_RS20095 -3.1 -9.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS08035 -3.1 -2.1 adenylosuccinate lyase compare
ABI39_RS08235 -3.1 -9.3 carbohydrate kinase compare
ABI39_RS00770 -3.1 -13.7 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS02500 -3.0 -9.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS20090 -3.0 -9.1 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS06670 -3.0 -13.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS17950 -3.0 -3.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS17150 -3.0 -4.0 hypothetical protein compare
ABI39_RS06995 -3.0 -8.1 tetratricopeptide repeat protein compare
ABI39_RS04690 -3.0 -14.8 biosynthetic arginine decarboxylase compare
ABI39_RS09245 -2.9 -17.2 cardiolipin synthase compare
ABI39_RS19920 -2.9 -6.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS14465 -2.9 -9.1 hypothetical protein compare
ABI39_RS20070 -2.9 -10.4 UDP-glucose 4-epimerase GalE compare
ABI39_RS08225 -2.9 -11.3 GH32 C-terminal domain-containing protein compare
ABI39_RS10110 -2.9 -14.3 S9 family peptidase compare
ABI39_RS18330 -2.9 -12.8 PD40 domain-containing protein compare
ABI39_RS04860 -2.8 -2.0 HigA family addiction module antidote protein compare
ABI39_RS02755 -2.8 -1.9 glycosyltransferase compare
ABI39_RS08195 -2.8 -6.7 hypothetical protein compare
ABI39_RS07090 -2.8 -2.0 hypothetical protein compare
ABI39_RS21350 -2.8 -3.2 aspartate--ammonia ligase compare
ABI39_RS06675 -2.8 -8.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10870 -2.7 -12.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS06250 -2.7 -13.7 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS20085 -2.7 -9.1 electron transport complex subunit E compare
ABI39_RS17175 -2.7 -5.9 tetratricopeptide repeat protein compare
ABI39_RS12955 -2.7 -8.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS14225 -2.7 -11.6 glycosyltransferase compare
ABI39_RS04280 -2.7 -6.1 DUF4292 domain-containing protein compare
ABI39_RS13180 -2.7 -4.0 FAD:protein FMN transferase compare
ABI39_RS14715 -2.6 -6.1 RidA family protein compare
ABI39_RS17170 -2.6 -2.4 protein BatD compare
ABI39_RS08230 -2.5 -9.5 MFS transporter compare
ABI39_RS09685 -2.5 -3.3 hypothetical protein compare
ABI39_RS15410 -2.4 -6.5 DUF4296 domain-containing protein compare
ABI39_RS19945 -2.4 -9.2 aspartate kinase compare
ABI39_RS20100 -2.4 -8.3 electron transport complex subunit RsxC compare
ABI39_RS14230 -2.4 -13.1 alpha-amylase compare
ABI39_RS00760 -2.4 -2.9 YjgP/YjgQ family permease compare
ABI39_RS04145 -2.4 -2.3 transcription elongation factor GreA compare
ABI39_RS08305 -2.4 -8.5 DUF4831 family protein compare
ABI39_RS20105 -2.3 -5.5 Fe-S cluster domain-containing protein compare
ABI39_RS07000 -2.3 -4.1 site-specific tyrosine recombinase XerD compare
ABI39_RS06010 -2.3 -7.1 polysaccharide deacetylase family protein compare
ABI39_RS20965 -2.3 -2.9 SPOR domain-containing protein compare
ABI39_RS11485 -2.2 -5.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS09855 -2.2 -2.5 polyprenyl synthetase family protein compare
ABI39_RS15415 -2.1 -6.3 hypothetical protein compare
ABI39_RS16875 -2.1 -3.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS02290 -2.1 -3.6 hypothetical protein compare
ABI39_RS17205 -2.1 -4.2 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS12965 -2.1 -10.0 hypothetical protein compare
ABI39_RS01300 -2.1 -12.2 NADP-specific glutamate dehydrogenase compare
ABI39_RS17315 -2.1 -12.8 alpha amylase C-terminal domain-containing protein compare
ABI39_RS05175 -2.1 -6.0 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS12725 -2.1 -3.2 acetolactate synthase small subunit compare
ABI39_RS17160 -2.0 -2.6 VWA domain-containing protein compare
ABI39_RS15320 -2.0 -10.9 PorT family protein compare
ABI39_RS16885 -2.0 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS11940 -2.0 -11.3 saccharopine dehydrogenase family protein compare
ABI39_RS05280 -2.0 -11.1 S41 family peptidase compare
ABI39_RS00410 -1.9 -4.3 response regulator compare
ABI39_RS17730 -1.9 -9.4 carboxynorspermidine decarboxylase compare
ABI39_RS16695 -1.9 -12.0 carbon-nitrogen hydrolase compare
ABI39_RS09850 -1.8 -4.1 energy transducer TonB compare
ABI39_RS09195 -1.8 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS16895 -1.8 -3.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS17320 -1.8 -3.3 YhcH/YjgK/YiaL family protein compare
ABI39_RS08850 -1.8 -3.1 toprim domain-containing protein compare
ABI39_RS15855 -1.8 -3.5 helix-turn-helix transcriptional regulator compare
ABI39_RS17945 -1.8 -11.1 glutamine synthetase III compare
ABI39_RS15265 -1.7 -3.1 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS06115 -1.7 -9.1 phosphatase PAP2 family protein compare
ABI39_RS07420 -1.6 -4.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS04730 -1.6 -1.7 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS12995 -1.6 -8.1 inositol-3-phosphate synthase compare
ABI39_RS12980 -1.5 -3.6 HAD family hydrolase compare
ABI39_RS12970 -1.5 -7.1 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS12945 -1.5 -4.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS12960 -1.5 -7.9 NDP-sugar synthase compare
ABI39_RS02985 -1.5 -3.8 arginine repressor compare
ABI39_RS20110 -1.5 -1.7 SoxR reducing system RseC family protein compare
ABI39_RS17195 -1.5 -8.3 hypothetical protein compare
ABI39_RS09285 -1.5 -1.6 hypothetical protein compare
ABI39_RS18300 -1.4 -6.7 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS18740 -1.4 -5.5 ATP-binding protein compare
ABI39_RS12755 -1.4 -3.0 SurA N-terminal domain-containing protein compare
ABI39_RS04970 -1.4 -3.2 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS09515 -1.4 -4.1 nucleoside deaminase compare
ABI39_RS01730 -1.4 -7.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS12670 -1.4 -3.9 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS06060 -1.3 -4.4 S9 family peptidase compare
ABI39_RS14030 -1.3 -3.7 MFS transporter compare
ABI39_RS12235 -1.3 -7.1 DUF4738 domain-containing protein compare
ABI39_RS17465 -1.3 -7.6 DUF3078 domain-containing protein compare
ABI39_RS00515 -1.2 -3.0 hypothetical protein compare
ABI39_RS11655 -1.2 -1.5 MFS transporter compare
ABI39_RS16870 -1.2 -2.9 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS02470 -1.2 -4.0 ATP-dependent DNA helicase RecG compare
ABI39_RS08185 -1.2 -4.6 hemolysin III family protein compare
ABI39_RS02060 -1.2 -4.7 translocation/assembly module TamB domain-containing protein compare
ABI39_RS20930 -1.2 -8.0 tetratricopeptide repeat protein compare
ABI39_RS03425 -1.2 -9.4 alpha-galactosidase compare
ABI39_RS02495 -1.2 -6.5 MotA/TolQ/ExbB proton channel family protein compare
ABI39_RS14220 -1.1 -5.3 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS01655 -1.1 -7.6 methylmalonyl-CoA mutase compare
ABI39_RS01725 -1.1 -3.4 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS16255 -1.1 -1.9 hypothetical protein compare
ABI39_RS01735 -1.1 -5.1 acyl-CoA dehydrogenase family protein compare
ABI39_RS11650 -1.1 -6.3 galactokinase compare
ABI39_RS02490 -1.1 -4.9 biopolymer transporter ExbD compare
ABI39_RS02350 -1.1 -4.4 ABC transporter permease compare
ABI39_RS06050 -1.1 -2.9 hypothetical protein compare
ABI39_RS12770 -1.1 -2.5 hypothetical protein compare
ABI39_RS18025 -1.0 -1.6 LytTR family transcriptional regulator compare
ABI39_RS03465 -1.0 -8.6 response regulator compare
ABI39_RS03830 -1.0 -1.6 ribosome-associated translation inhibitor RaiA compare
ABI39_RS02480 -1.0 -2.3 DJ-1/PfpI family protein compare
ABI39_RS16235 -1.0 -2.2 hypothetical protein compare
ABI39_RS01650 -1.0 -6.0 methylmalonyl-CoA mutase small subunit compare
ABI39_RS06920 -1.0 -4.4 glycosyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Raffinose pentahydrate in Phocaeicola dorei CL03T12C01

For carbon source D-Raffinose pentahydrate across organisms