Experiment set3S370 for Phocaeicola dorei CL03T12C01

Compare to:

D-Xylose 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS19930 -8.5 -5.9 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS21065 -7.7 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS20445 -7.7 -5.3 xylose isomerase compare
ABI39_RS02980 -7.5 -8.9 N-acetyltransferase compare
ABI39_RS10260 -7.4 -10.1 adenylosuccinate synthase compare
ABI39_RS19935 -7.3 -7.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS04695 -7.2 -7.8 shikimate kinase compare
ABI39_RS10495 -7.0 -9.6 prephenate dehydrogenase compare
ABI39_RS02970 -6.8 -9.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS07790 -6.6 -10.7 M20 family metallo-hydrolase compare
ABI39_RS02975 -6.6 -12.6 argininosuccinate synthase compare
ABI39_RS12645 -6.5 -15.6 chorismate synthase compare
ABI39_RS21060 -6.5 -9.9 anthranilate phosphoribosyltransferase compare
ABI39_RS07005 -6.5 -8.4 type II 3-dehydroquinate dehydratase compare
ABI39_RS11830 -6.2 -4.3 ATP phosphoribosyltransferase compare
ABI39_RS04685 -6.2 -5.8 acetylglutamate kinase compare
ABI39_RS02880 -6.2 -9.8 glutamate 5-kinase compare
ABI39_RS20450 -6.2 -10.3 carbohydrate kinase compare
ABI39_RS02315 -6.2 -9.4 IMP dehydrogenase compare
ABI39_RS07095 -6.1 -21.9 argininosuccinate lyase compare
ABI39_RS11845 -6.0 -4.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS21045 -6.0 -5.8 tryptophan synthase subunit beta compare
ABI39_RS11840 -5.9 -4.1 histidinol-phosphate transaminase compare
ABI39_RS16905 -5.8 -14.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12720 -5.8 -14.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10510 -5.8 -9.9 prephenate dehydratase compare
ABI39_RS10215 -5.7 -11.9 3-isopropylmalate dehydrogenase compare
ABI39_RS21075 -5.6 -8.3 tryptophan synthase subunit alpha compare
ABI39_RS02875 -5.5 -10.6 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10200 -5.5 -14.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS00475 -5.4 -6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS12665 -5.4 -9.6 shikimate dehydrogenase compare
ABI39_RS06055 -5.3 -8.8 phosphoribosylamine--glycine ligase compare
ABI39_RS05660 -5.3 -10.7 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10430 -5.2 -15.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02960 -5.2 -13.3 pyrroline-5-carboxylate reductase compare
ABI39_RS19925 -5.2 -10.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10210 -5.1 -13.2 2-isopropylmalate synthase compare
ABI39_RS16910 -5.1 -8.3 3-phosphoglycerate dehydrogenase compare
ABI39_RS02870 -5.1 -8.4 acetylornithine carbamoyltransferase compare
ABI39_RS10505 -5.0 -13.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10500 -4.9 -5.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS10205 -4.9 -6.6 3-isopropylmalate dehydratase small subunit compare
ABI39_RS11405 -4.8 -12.3 hypothetical protein compare
ABI39_RS12675 -4.8 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS10435 -4.8 -10.8 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10440 -4.7 -7.8 threonine synthase compare
ABI39_RS04245 -4.7 -2.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS21050 -4.6 -7.9 anthranilate synthase component I family protein compare
ABI39_RS12715 -4.5 -11.5 dihydroxy-acid dehydratase compare
ABI39_RS17420 -4.5 -9.0 serine hydroxymethyltransferase compare
ABI39_RS12735 -4.4 -7.2 ketol-acid reductoisomerase compare
ABI39_RS00405 -4.4 -23.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS19950 -4.3 -5.0 diaminopimelate decarboxylase compare
ABI39_RS11835 -4.2 -7.6 histidinol dehydrogenase compare
ABI39_RS04795 -4.2 -2.7 M28 family peptidase compare
ABI39_RS13185 -4.2 -2.7 manganese efflux pump compare
ABI39_RS10195 -4.1 -8.5 2-isopropylmalate synthase compare
ABI39_RS00205 -4.0 -3.9 phosphoglucosamine mutase compare
ABI39_RS01415 -4.0 -3.9 branched-chain amino acid aminotransferase compare
ABI39_RS00770 -4.0 -14.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS14465 -3.9 -8.1 hypothetical protein compare
ABI39_RS09845 -3.9 -3.7 (d)CMP kinase compare
ABI39_RS10640 -3.8 -13.8 serine dehydratase subunit alpha family protein compare
ABI39_RS14030 -3.8 -4.8 MFS transporter compare
ABI39_RS10870 -3.8 -12.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS19945 -3.8 -12.3 aspartate kinase compare
ABI39_RS18745 -3.6 -5.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS02965 -3.6 -11.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS20455 -3.5 -7.9 NUDIX hydrolase compare
ABI39_RS17950 -3.5 -3.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS12725 -3.5 -5.6 acetolactate synthase small subunit compare
ABI39_RS06670 -3.4 -11.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS20990 -3.3 -11.7 D-xylose transporter XylE conserved
ABI39_RS06675 -3.3 -7.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS12955 -3.2 -8.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS19920 -3.2 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS09575 -3.1 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS08035 -3.1 -2.1 adenylosuccinate lyase compare
ABI39_RS04145 -3.1 -2.1 transcription elongation factor GreA compare
ABI39_RS05175 -3.1 -8.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS04690 -3.1 -10.0 biosynthetic arginine decarboxylase compare
ABI39_RS12415 -3.1 -4.4 biotin/lipoyl-binding protein compare
ABI39_RS05450 -3.0 -4.7 redox-regulated ATPase YchF compare
ABI39_RS10110 -2.8 -11.4 S9 family peptidase compare
ABI39_RS06380 -2.8 -8.2 GH3 auxin-responsive promoter family protein compare
ABI39_RS08185 -2.8 -8.7 hemolysin III family protein compare
ABI39_RS01300 -2.8 -9.9 NADP-specific glutamate dehydrogenase compare
ABI39_RS04700 -2.8 -4.9 type I DNA topoisomerase compare
ABI39_RS14560 -2.7 -2.5 aspartate 1-decarboxylase compare
ABI39_RS08305 -2.7 -9.3 DUF4831 family protein compare
ABI39_RS06250 -2.7 -15.4 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS19985 -2.7 -1.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS00515 -2.6 -3.6 hypothetical protein compare
ABI39_RS02500 -2.6 -8.9 pyridoxine 5'-phosphate synthase compare
ABI39_RS02755 -2.5 -2.4 glycosyltransferase compare
ABI39_RS04885 -2.5 -3.4 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS16315 -2.5 -1.6 conjugative transposon protein TraK compare
ABI39_RS09855 -2.4 -3.2 polyprenyl synthetase family protein compare
ABI39_RS20965 -2.4 -3.4 SPOR domain-containing protein compare
ABI39_RS15415 -2.4 -6.3 hypothetical protein compare
ABI39_RS04505 -2.4 -6.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS01360 -2.4 -7.4 hypothetical protein compare
ABI39_RS17170 -2.4 -2.3 protein BatD compare
ABI39_RS17140 -2.4 -3.1 AAA family ATPase compare
ABI39_RS04280 -2.4 -5.2 DUF4292 domain-containing protein compare
ABI39_RS21350 -2.3 -3.1 aspartate--ammonia ligase compare
ABI39_RS15410 -2.3 -6.6 DUF4296 domain-containing protein compare
ABI39_RS17150 -2.3 -4.0 hypothetical protein compare
ABI39_RS09685 -2.3 -2.6 hypothetical protein compare
ABI39_RS06115 -2.3 -10.4 phosphatase PAP2 family protein compare
ABI39_RS00520 -2.2 -9.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS17160 -2.2 -2.1 VWA domain-containing protein compare
ABI39_RS06995 -2.2 -6.7 tetratricopeptide repeat protein compare
ABI39_RS10650 -2.1 -12.5 AraC family transcriptional regulator compare
ABI39_RS13180 -2.1 -3.7 FAD:protein FMN transferase compare
ABI39_RS18330 -2.1 -7.8 PD40 domain-containing protein compare
ABI39_RS08195 -2.1 -5.0 hypothetical protein compare
ABI39_RS02140 -2.1 -2.8 TetR/AcrR family transcriptional regulator compare
ABI39_RS07090 -2.1 -1.0 hypothetical protein compare
ABI39_RS11635 -2.0 -7.5 NUDIX hydrolase compare
ABI39_RS12150 -2.0 -4.2 hotdog fold thioesterase compare
ABI39_RS12770 -2.0 -4.0 hypothetical protein compare
ABI39_RS17175 -1.9 -4.9 tetratricopeptide repeat protein compare
ABI39_RS17945 -1.9 -11.3 glutamine synthetase III compare
ABI39_RS12560 -1.9 -9.0 GGGtGRT protein compare
ABI39_RS09195 -1.9 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS16885 -1.9 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS06010 -1.9 -6.0 polysaccharide deacetylase family protein compare
ABI39_RS21055 -1.8 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS11940 -1.8 -11.3 saccharopine dehydrogenase family protein compare
ABI39_RS18910 -1.8 -2.6 preprotein translocase subunit YajC compare
ABI39_RS12565 -1.8 -5.8 hypothetical protein compare
ABI39_RS04730 -1.8 -2.1 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS02355 -1.7 -7.5 ABC transporter ATP-binding protein compare
ABI39_RS16235 -1.7 -3.6 hypothetical protein compare
ABI39_RS12425 -1.7 -8.2 acyl-CoA carboxylase subunit beta compare
ABI39_RS12755 -1.7 -2.9 SurA N-terminal domain-containing protein compare
ABI39_RS17730 -1.7 -7.6 carboxynorspermidine decarboxylase compare
ABI39_RS09245 -1.6 -9.1 cardiolipin synthase compare
ABI39_RS05280 -1.6 -9.6 S41 family peptidase compare
ABI39_RS11875 -1.6 -4.2 OmpH family outer membrane protein compare
ABI39_RS16320 -1.6 -1.7 DUF3989 domain-containing protein compare
ABI39_RS22225 -1.6 -1.6 hypothetical protein compare
ABI39_RS14255 -1.6 -5.3 DUF452 family protein compare
ABI39_RS06920 -1.6 -3.8 glycosyltransferase compare
ABI39_RS15760 -1.6 -1.7 hypothetical protein compare
ABI39_RS08135 -1.5 -3.0 YicC family protein compare
ABI39_RS02350 -1.5 -5.8 ABC transporter permease compare
ABI39_RS04860 -1.5 -1.3 HigA family addiction module antidote protein compare
ABI39_RS04970 -1.4 -4.1 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS15320 -1.4 -8.9 PorT family protein compare
ABI39_RS16875 -1.4 -2.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS14250 -1.4 -7.7 8-amino-7-oxononanoate synthase compare
ABI39_RS11545 -1.4 -5.5 hypothetical protein compare
ABI39_RS16695 -1.4 -6.7 carbon-nitrogen hydrolase compare
ABI39_RS17770 -1.4 -3.5 flavodoxin family protein compare
ABI39_RS13225 -1.4 -2.1 phosphopyruvate hydratase compare
ABI39_RS01735 -1.4 -5.5 acyl-CoA dehydrogenase family protein compare
ABI39_RS05765 -1.3 -1.9 DUF4294 domain-containing protein compare
ABI39_RS17780 -1.3 -6.7 HesA/MoeB/ThiF family protein compare
ABI39_RS16130 -1.3 -2.3 DUF3945 domain-containing protein compare
ABI39_RS18740 -1.3 -4.4 ATP-binding protein compare
ABI39_RS08850 -1.3 -2.5 toprim domain-containing protein compare
ABI39_RS11485 -1.3 -3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS14245 -1.3 -6.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS12945 -1.3 -5.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS20930 -1.3 -9.1 tetratricopeptide repeat protein compare
ABI39_RS14265 -1.3 -6.2 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS17795 -1.3 -5.5 thiamine phosphate synthase compare
ABI39_RS04930 -1.3 -3.6 helix-turn-helix transcriptional regulator compare
ABI39_RS01730 -1.3 -4.1 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS14085 -1.2 -1.3 hypothetical protein compare
ABI39_RS07420 -1.2 -4.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS14260 -1.2 -6.3 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS14070 -1.2 -1.5 DNA-binding protein compare
ABI39_RS02125 -1.2 -1.4 hypothetical protein compare
ABI39_RS18025 -1.2 -1.6 LytTR family transcriptional regulator compare
ABI39_RS06060 -1.2 -3.8 S9 family peptidase compare
ABI39_RS20615 -1.2 -6.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS09515 -1.2 -3.6 nucleoside deaminase compare
ABI39_RS12965 -1.1 -6.6 hypothetical protein compare
ABI39_RS22955 -1.1 -2.9 hypothetical protein compare
ABI39_RS19385 -1.1 -1.9 hypothetical protein compare
ABI39_RS14715 -1.1 -3.9 RidA family protein compare
ABI39_RS07510 -1.1 -2.0 hypothetical protein compare
ABI39_RS14240 -1.1 -4.0 biotin synthase BioB compare
ABI39_RS00760 -1.1 -1.8 YjgP/YjgQ family permease compare
ABI39_RS17755 -1.1 -3.7 thiazole synthase compare
ABI39_RS02745 -1.1 -4.9 DUF59 domain-containing protein compare
ABI39_RS04230 -1.1 -5.3 RNA polymerase factor sigma-54 compare
ABI39_RS14375 -1.1 -1.6 DUF4492 domain-containing protein compare
ABI39_RS12670 -1.0 -3.0 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS09670 -1.0 -1.4 cardiolipin synthase compare
ABI39_RS14235 -1.0 -2.5 hypothetical protein compare
ABI39_RS12960 -1.0 -5.1 NDP-sugar synthase compare
ABI39_RS15920 -1.0 -2.9 type II toxin-antitoxin system HigB family toxin compare
ABI39_RS16310 -1.0 -2.5 conjugative transposon protein TraJ compare
ABI39_RS16515 -1.0 -1.5 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS12995 -1.0 -5.8 inositol-3-phosphate synthase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Xylose in Phocaeicola dorei CL03T12C01

For carbon source D-Xylose across organisms