Experiment set3S367 for Escherichia coli ECOR27

Compare to:

Bas37

200 most important genes:

  gene name fitness t score description  
NOLOHH_06715 wecA -8.6 -5.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
NOLOHH_07565 rfaL -7.8 -5.4 O-antigen ligase RfaL compare
NOLOHH_07555 rfaJ -7.6 -5.2 glucosyltransferase compare
NOLOHH_15730 -7.5 -5.2 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
NOLOHH_07560 rfaB -7.3 -5.1 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
NOLOHH_07545 waaO -6.6 -4.6 lipopolysaccharide 3-alpha-galactosyltransferase compare
NOLOHH_23145 galE -6.1 -4.2 UDP-glucose 4-epimerase GalE compare
NOLOHH_06665 wzyE -5.9 -7.0 ECA oligosaccharide polymerase compare
NOLOHH_23480 pgm -5.5 -3.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_06675 wzxE -5.4 -3.7 lipid III flippase WzxE compare
NOLOHH_12545 recA -4.0 -3.9 recombinase RecA compare
NOLOHH_20460 galU -4.0 -2.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
NOLOHH_00445 -3.9 -5.4 peptidyl-arginine deiminase compare
NOLOHH_07575 rfaF -3.5 -2.4 ADP-heptose--LPS heptosyltransferase RfaF compare
NOLOHH_07535 rfaG -3.2 -6.9 Lipopolysaccharide core biosynthesis protein RfaG compare
NOLOHH_11230 tkt -2.9 -3.5 transketolase compare
NOLOHH_09835 obgE -2.8 -2.0 GTPase ObgE compare
NOLOHH_02390 gmhB -2.6 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NOLOHH_17365 nudG -2.6 -2.5 CTP pyrophosphohydrolase compare
NOLOHH_14340 ubiX -2.6 -3.5 flavin prenyltransferase UbiX compare
NOLOHH_06395 rfaH -2.6 -5.2 transcription/translation regulatory transformer protein RfaH compare
NOLOHH_04655 epmB -2.6 -2.4 EF-P beta-lysylation protein EpmB compare
NOLOHH_01270 clpP -2.6 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_03170 surA -2.5 -5.7 peptidylprolyl isomerase SurA compare
NOLOHH_12800 ratA -2.4 -2.6 type II toxin-antitoxin system toxin RatA compare
NOLOHH_13075 lepA -2.2 -4.9 translation elongation factor 4 compare
NOLOHH_23485 seqA -2.2 -2.1 replication initiation negative regulator SeqA compare
NOLOHH_06920 mnmG -2.2 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
NOLOHH_02845 aceE -2.2 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
NOLOHH_09845 greA -2.2 -2.1 transcription elongation factor GreA compare
NOLOHH_13310 hscA -2.1 -3.8 Fe-S protein assembly chaperone HscA compare
NOLOHH_09730 ptsN -2.1 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
NOLOHH_18245 mlc -2.0 -2.5 DNA-binding transcriptional repressor Mlc compare
NOLOHH_12165 -2.0 -2.1 LemA family compare
NOLOHH_11515 lysS -1.9 -3.1 lysine--tRNA ligase compare
NOLOHH_19320 ydcH -1.9 -1.7 Uncharacterized protein YdcH compare
NOLOHH_18070 rsxB -1.9 -2.1 electron transport complex subunit RsxB compare
NOLOHH_13415 guaA -1.9 -2.4 glutamine-hydrolyzing GMP synthase compare
NOLOHH_23310 odhB -1.9 -2.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
NOLOHH_13055 rseA -1.8 -2.0 anti-sigma-E factor RseA compare
NOLOHH_18220 ydgD -1.8 -1.6 Uncharacterized serine protease YdgD compare
NOLOHH_04525 miaA -1.8 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
NOLOHH_02710 yadN -1.8 -1.9 Uncharacterized fimbrial-like protein YadN compare
NOLOHH_23510 fur -1.8 -3.3 ferric iron uptake transcriptional regulator compare
NOLOHH_19205 mddA -1.7 -1.9 L-methionine sulfoximine/L-methionine sulfone acetyltransferase compare
NOLOHH_19535 hslJ -1.7 -2.3 heat shock protein HslJ compare
NOLOHH_16135 rfaF -1.6 -1.1 Glycosyltransferase family 9 (heptosyltransferase) compare
NOLOHH_08775 -1.6 -4.3 NfuA family Fe-S biogenesis protein compare
NOLOHH_17400 ydjZ -1.6 -2.0 TVP38/TMEM64 family inner membrane protein YdjZ compare
NOLOHH_18050 rsxE -1.6 -2.0 electron transport complex subunit RsxE compare
NOLOHH_14500 nuoJ -1.6 -4.3 NADH-quinone oxidoreductase subunit J compare
NOLOHH_03375 dnaJ -1.6 -1.9 molecular chaperone DnaJ compare
NOLOHH_05250 -1.6 -1.3 Putative type III effector protein compare
NOLOHH_08900 aroK -1.6 -1.9 shikimate kinase AroK compare
NOLOHH_20550 chaC -1.6 -1.8 glutathione-specific gamma-glutamylcyclotransferase compare
NOLOHH_14780 apbE -1.6 -2.3 FAD:protein FMN transferase ApbE compare
NOLOHH_19580 sitD -1.5 -1.3 iron/manganese ABC transporter permease subunit SitD compare
NOLOHH_07540 rfaP -1.5 -4.3 lipopolysaccharide core heptose(I) kinase RfaP compare
NOLOHH_13390 bamB -1.5 -5.4 outer membrane protein assembly factor BamB compare
NOLOHH_11495 xerD -1.5 -2.6 site-specific tyrosine recombinase XerD compare
NOLOHH_24235 -1.5 -2.0 conjugal transfer protein TraM compare
NOLOHH_02690 dksA -1.5 -4.1 RNA polymerase-binding protein DksA compare
NOLOHH_17705 ydiO -1.5 -2.0 acyl-CoA dehydrogenase compare
NOLOHH_11365 rpiA -1.5 -2.9 ribose-5-phosphate isomerase RpiA compare
NOLOHH_14505 nuoK -1.5 -1.7 NADH-quinone oxidoreductase subunit NuoK compare
NOLOHH_03190 apaH -1.5 -5.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_14305 truA -1.5 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
NOLOHH_20440 ychT -1.5 -1.6 Protein YchT compare
NOLOHH_14595 arnT -1.4 -2.0 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
NOLOHH_19045 yddM -1.4 -1.8 HigA family addiction module antitoxin compare
NOLOHH_14410 pta -1.4 -1.5 phosphate acetyltransferase compare
NOLOHH_06300 dsbA -1.4 -3.9 thiol:disulfide interchange protein DsbA compare
NOLOHH_20205 osmB -1.4 -1.8 osmotically-inducible lipoprotein OsmB compare
NOLOHH_19420 ydbD -1.3 -1.2 Uncharacterized protein YdbD compare
NOLOHH_08375 pitA -1.3 -4.1 inorganic phosphate transporter PitA compare
NOLOHH_18060 rsxD -1.3 -4.2 electron transport complex subunit RsxD compare
NOLOHH_14485 nuoG -1.3 -5.2 NADH-quinone oxidoreductase subunit NuoG compare
NOLOHH_20195 yciZ -1.3 -2.7 UPF0509 protein YciZ compare
NOLOHH_14490 nuoH -1.3 -3.9 NADH-quinone oxidoreductase subunit NuoH compare
NOLOHH_13865 crr -1.3 -1.4 PTS glucose transporter subunit IIA compare
NOLOHH_06550 xerC -1.3 -1.5 tyrosine recombinase XerC compare
NOLOHH_13070 rseC -1.3 -3.0 SoxR-reducing system protein RseC compare
NOLOHH_05965 pfkA -1.3 -4.7 6-phosphofructokinase compare
NOLOHH_21130 yceD -1.3 -2.2 23S rRNA accumulation protein YceD compare
NOLOHH_07020 pstA -1.2 -3.9 phosphate ABC transporter permease PstA compare
NOLOHH_11770 yqeL -1.2 -1.7 Uncharacterized protein YqeL compare
NOLOHH_17270 yeaC -1.1 -1.8 Uncharacterized protein YeaC compare
NOLOHH_04005 Leu_trna -1.1 -1.6 tRNA-Leu(caa) compare
NOLOHH_13300 iscA -1.1 -1.7 iron-sulfur cluster assembly protein IscA compare
NOLOHH_23250 tolR -1.1 -2.5 colicin uptake protein TolR compare
NOLOHH_09590 argR -1.1 -1.9 transcriptional regulator ArgR compare
NOLOHH_14495 nuoI -1.1 -2.4 NADH-quinone oxidoreductase subunit NuoI compare
NOLOHH_23240 tolB -1.1 -4.3 Tol-Pal system protein TolB compare
NOLOHH_19510 feaR -1.1 -2.4 transcriptional regulator FeaR compare
NOLOHH_24770 -1.1 -1.3 conjugal transfer protein TrbE compare
NOLOHH_19195 mcbR -1.1 -0.9 colanic acid/biofilm transcriptional regulator McbR compare
NOLOHH_11480 sdhE -1.1 -0.9 FAD assembly factor SdhE compare
NOLOHH_24570 -1.1 -1.3 Alpha/beta hydrolase compare
NOLOHH_19835 racC -1.1 -2.0 Protein RacC compare
NOLOHH_20355 ompW -1.0 -2.3 outer membrane protein OmpW compare
NOLOHH_07435 spoT -1.0 -1.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
NOLOHH_18065 rsxC -1.0 -3.5 electron transport complex subunit RsxC compare
NOLOHH_17480 chbC -1.0 -1.9 PTS N,N'-diacetylchitobiose transporter subunit IIC compare
NOLOHH_19260 hicB -1.0 -1.3 type II toxin-antitoxin system antitoxin HicB compare
NOLOHH_20845 pdeG -1.0 -0.9 putative cyclic di-GMP phosphodiesterase PdeG compare
NOLOHH_06250 hemN -1.0 -5.9 oxygen-independent coproporphyrinogen III oxidase compare
NOLOHH_01245 ppiD -1.0 -1.3 peptidylprolyl isomerase compare
NOLOHH_01255 lon_P403L -1.0 -4.0 Lon protease compare
NOLOHH_20690 ymgE -1.0 -2.3 UPF0410 protein YmgE compare
NOLOHH_14460 nuoA -1.0 -2.2 NADH-quinone oxidoreductase subunit NuoA compare
NOLOHH_17565 yniD -0.9 -0.8 Uncharacterized protein YniD compare
NOLOHH_23245 tolA -0.9 -2.5 cell envelope integrity protein TolA compare
NOLOHH_13990 ypeD -0.9 -2.0 Protein YpeD compare
NOLOHH_13420 yfgI -0.9 -2.6 Uncharacterized protein YfgI compare
NOLOHH_00405 hipB -0.9 -0.8 XRE family transcriptional regulator compare
NOLOHH_16425 yecC -0.9 -1.6 L-cystine ABC transporter ATP-binding protein YecC compare
NOLOHH_20420 oppA -0.9 -2.5 oligopeptide ABC transporter substrate-binding protein OppA compare
NOLOHH_14520 nuoN -0.9 -3.1 NADH-quinone oxidoreductase subunit NuoN compare
NOLOHH_07015 pstC -0.9 -2.1 phosphate ABC transporter permease PstC compare
NOLOHH_01935 rclC -0.9 -1.5 reactive chlorine species resistance protein RclC compare
NOLOHH_14510 nuoL -0.9 -3.4 NADH-quinone oxidoreductase subunit L compare
NOLOHH_00740 dksA -0.9 -2.0 conjugal transfer protein TraR compare
NOLOHH_16855 kdgA -0.9 -1.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
NOLOHH_00285 -0.9 -1.8 cag pathogenicity island Cag12 family protein compare
NOLOHH_09955 deaD -0.9 -2.1 ATP-dependent RNA helicase DeaD compare
NOLOHH_21000 ldtC -0.9 -1.6 L,D-transpeptidase LdtC compare
NOLOHH_00785 fimC -0.9 -0.7 type 1 fimbria chaperone FimC compare
NOLOHH_02290 yafU -0.8 -2.6 Putative inner membrane protein YafU compare
NOLOHH_16865 yebG -0.8 -0.8 DNA damage-inducible protein YebG compare
NOLOHH_01275 tig -0.8 -2.6 trigger factor compare
NOLOHH_18900 ydeN -0.8 -1.4 Uncharacterized sulfatase YdeN compare
NOLOHH_24115 -0.8 -0.8 hypothetical protein compare
NOLOHH_01380 pgpA -0.8 -0.8 phosphatidylglycerophosphatase A compare
NOLOHH_07010 pstS -0.8 -4.9 phosphate ABC transporter substrate-binding protein PstS compare
NOLOHH_22605 ybiJ -0.8 -1.9 DUF1471 domain-containing protein compare
NOLOHH_20280 sohB -0.8 -1.6 protease SohB compare
NOLOHH_22715 moaE -0.8 -2.4 molybdopterin synthase catalytic subunit MoaE compare
NOLOHH_16565 cheW -0.8 -1.6 chemotaxis protein CheW compare
NOLOHH_07125 -0.8 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
NOLOHH_12505 srlR -0.8 -3.6 glucitol operon DNA-binding transcriptional repressor SrlR compare
NOLOHH_13060 rseB -0.8 -3.8 sigma-E factor regulatory protein RseB compare
NOLOHH_23235 pal -0.8 -1.9 peptidoglycan-associated lipoprotein Pal compare
NOLOHH_04165 treC -0.8 -3.2 alpha,alpha-phosphotrehalase compare
NOLOHH_15910 yoeJ -0.8 -1.5 Protein YoeJ compare
NOLOHH_11940 recD -0.8 -3.2 exodeoxyribonuclease V subunit alpha compare
NOLOHH_15430 yegV -0.8 -3.0 Uncharacterized sugar kinase YegV compare
NOLOHH_17620 btuC -0.8 -1.4 vitamin B12 ABC transporter permease BtuC compare
NOLOHH_09530 rng -0.8 -3.8 ribonuclease G compare
NOLOHH_14480 nuoF -0.8 -3.0 NADH-quinone oxidoreductase subunit NuoF compare
NOLOHH_20670 dhaL -0.8 -1.2 dihydroxyacetone kinase subunit DhaL compare
NOLOHH_18755 yneJ -0.8 -1.3 Uncharacterized HTH-type transcriptional regulator YneJ compare
NOLOHH_18965 ddpB -0.7 -1.5 putative D,D-dipeptide transport system permease protein DdpB compare
NOLOHH_08720 glpD -0.7 -2.9 glycerol-3-phosphate dehydrogenase compare
NOLOHH_06530 corA -0.7 -2.3 magnesium/cobalt transporter CorA compare
NOLOHH_10610 tolC -0.7 -2.3 outer membrane channel protein TolC compare
NOLOHH_20750 umuC -0.7 -1.0 DNA polymerase V catalytic protein compare
NOLOHH_07550 rfaY -0.7 -1.4 lipopolysaccharide core heptose(II) kinase RfaY compare
NOLOHH_06755 ppiC -0.7 -1.4 peptidylprolyl isomerase PpiC compare
NOLOHH_09695 arcB -0.7 -2.7 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_13185 glyA -0.7 -2.7 serine hydroxymethyltransferase compare
NOLOHH_17175 yeaQ -0.7 -1.1 UPF0410 protein YeaQ compare
NOLOHH_11490 fldB -0.7 -3.2 flavodoxin FldB compare
NOLOHH_21790 ompA -0.7 -4.2 outer membrane protein A compare
NOLOHH_07945 hokA -0.7 -1.5 type I toxin-antitoxin system toxin HokA compare
NOLOHH_06915 mioC -0.7 -3.2 FMN-binding protein MioC compare
NOLOHH_04615 -0.7 -2.3 Fumarate reductase subunit C compare
NOLOHH_24715 traS -0.7 -0.9 conjugal transfer entry exclusion protein TraS compare
NOLOHH_14090 oxc -0.7 -1.6 oxalyl-CoA decarboxylase compare
NOLOHH_04490 nsrR -0.7 -3.7 nitric oxide-sensing transcriptional repressor NsrR compare
NOLOHH_17975 sodC -0.7 -0.9 superoxide dismutase [Cu-Zn] SodC compare
NOLOHH_16015 pduF -0.7 -0.9 propanediol diffusion facilitator PduF compare
NOLOHH_02170 tnp-ISAs1 -0.7 -1.3 ISAs1 family transposase compare
NOLOHH_17880 mdtK -0.7 -1.7 multidrug efflux MATE transporter MdtK compare
NOLOHH_14625 ais -0.7 -2.3 Lipopolysaccharide core heptose(II)-phosphate phosphatase compare
NOLOHH_14785 ada -0.7 -2.5 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada compare
NOLOHH_08495 yhhL -0.7 -0.8 DUF1145 domain-containing protein compare
NOLOHH_09430 yhdV -0.7 -2.1 Uncharacterized protein YhdV compare
NOLOHH_02485 rnhB -0.7 -1.0 ribonuclease HII compare
NOLOHH_17075 nudL -0.7 -1.3 CoA pyrophosphatase compare
NOLOHH_21880 elfD -0.7 -0.9 putative fimbrial chaperone protein ElfD compare
NOLOHH_23105 pgl -0.7 -2.7 6-phosphogluconolactonase compare
NOLOHH_10425 nfeR -0.7 -1.6 DNA-binding transcriptional regulator NfeR compare
NOLOHH_22725 moaC -0.7 -2.6 cyclic pyranopterin monophosphate synthase MoaC compare
NOLOHH_01145 tomB -0.7 -3.2 Hha toxicity modulator TomB compare
NOLOHH_21675 cbdX -0.7 -0.8 cytochrome bd-II oxidase subunit CbdX compare
NOLOHH_23875 uspG -0.7 -1.7 universal stress protein UspG compare
NOLOHH_22145 lrp -0.7 -3.1 leucine-responsive transcriptional regulator Lrp compare
NOLOHH_06310 yihD -0.7 -2.1 Protein YihD compare
NOLOHH_17900 punR -0.7 -2.7 DNA-binding transcriptional activator PunR compare
NOLOHH_05325 yjbE -0.7 -2.2 Uncharacterized protein YjbE compare
NOLOHH_00565 -0.7 -0.9 Lambda prophage-derived head-to-tail joining protein W compare
NOLOHH_18640 ydfG -0.6 -0.9 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
NOLOHH_11790 yqeH -0.6 -1.5 Uncharacterized protein YqeH compare
NOLOHH_23735 rlmH -0.6 -1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
NOLOHH_17055 -0.6 -0.9 Cytoplasmic protein compare
NOLOHH_15015 fruB -0.6 -3.1 fused PTS fructose transporter subunit IIA/HPr protein compare
NOLOHH_03300 fkpB -0.6 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
NOLOHH_19640 -0.6 -1.1 Phage tail tube protein compare
NOLOHH_00425 -0.6 -1.8 excisionase compare
NOLOHH_24835 traK -0.6 -0.9 type-F conjugative transfer system secretin TraK compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in phage experiments

For phage Phage across organisms