Experiment set3S367 for Phocaeicola dorei CL03T12C01

Compare to:

D-Mannose 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21065 -5.8 -8.5 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS14225 -5.6 -8.6 glycosyltransferase compare
ABI39_RS17315 -5.1 -12.7 alpha amylase C-terminal domain-containing protein compare
ABI39_RS21060 -5.1 -11.2 anthranilate phosphoribosyltransferase compare
ABI39_RS19985 -4.9 -3.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS14230 -4.9 -11.7 alpha-amylase compare
ABI39_RS02980 -4.5 -6.0 N-acetyltransferase compare
ABI39_RS10260 -4.4 -12.9 adenylosuccinate synthase compare
ABI39_RS12675 -4.3 -7.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS04685 -4.3 -7.6 acetylglutamate kinase compare
ABI39_RS05450 -4.2 -5.7 redox-regulated ATPase YchF compare
ABI39_RS02975 -4.2 -9.9 argininosuccinate synthase compare
ABI39_RS00475 -4.2 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS07095 -4.2 -19.4 argininosuccinate lyase compare
ABI39_RS19935 -4.1 -8.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS11830 -4.0 -5.5 ATP phosphoribosyltransferase compare
ABI39_RS10870 -4.0 -12.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS07790 -4.0 -7.8 M20 family metallo-hydrolase compare
ABI39_RS11840 -4.0 -6.5 histidinol-phosphate transaminase compare
ABI39_RS00205 -3.9 -3.8 phosphoglucosamine mutase compare
ABI39_RS19925 -3.9 -9.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS11845 -3.9 -8.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS19950 -3.8 -5.2 diaminopimelate decarboxylase compare
ABI39_RS02970 -3.8 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02870 -3.8 -11.4 acetylornithine carbamoyltransferase compare
ABI39_RS02315 -3.8 -8.4 IMP dehydrogenase compare
ABI39_RS14220 -3.7 -10.6 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS09845 -3.7 -3.6 (d)CMP kinase compare
ABI39_RS02875 -3.7 -10.4 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10505 -3.7 -10.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS01415 -3.7 -3.5 branched-chain amino acid aminotransferase compare
ABI39_RS10495 -3.6 -9.0 prephenate dehydrogenase compare
ABI39_RS17420 -3.6 -6.6 serine hydroxymethyltransferase compare
ABI39_RS05660 -3.6 -8.8 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS06055 -3.6 -11.1 phosphoribosylamine--glycine ligase compare
ABI39_RS05175 -3.5 -5.1 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS10435 -3.5 -10.0 cofactor-independent phosphoglycerate mutase compare
ABI39_RS12715 -3.5 -14.9 dihydroxy-acid dehydratase compare
ABI39_RS00405 -3.5 -18.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS10440 -3.5 -10.2 threonine synthase compare
ABI39_RS19930 -3.4 -7.7 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS19945 -3.4 -12.3 aspartate kinase compare
ABI39_RS21075 -3.4 -6.2 tryptophan synthase subunit alpha compare
ABI39_RS04700 -3.4 -5.1 type I DNA topoisomerase compare
ABI39_RS12720 -3.4 -10.7 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS11835 -3.4 -7.1 histidinol dehydrogenase compare
ABI39_RS10200 -3.4 -12.0 3-isopropylmalate dehydratase large subunit compare
ABI39_RS21050 -3.3 -7.6 anthranilate synthase component I family protein compare
ABI39_RS09575 -3.3 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS17950 -3.3 -3.2 Crp/Fnr family transcriptional regulator compare
ABI39_RS21045 -3.3 -6.6 tryptophan synthase subunit beta compare
ABI39_RS04690 -3.3 -12.2 biosynthetic arginine decarboxylase compare
ABI39_RS10215 -3.3 -12.2 3-isopropylmalate dehydrogenase compare
ABI39_RS16905 -3.3 -13.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10430 -3.2 -12.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02960 -3.2 -10.5 pyrroline-5-carboxylate reductase compare
ABI39_RS02965 -3.1 -8.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10210 -3.1 -13.9 2-isopropylmalate synthase compare
ABI39_RS10510 -3.1 -10.6 prephenate dehydratase compare
ABI39_RS10205 -3.0 -6.2 3-isopropylmalate dehydratase small subunit compare
ABI39_RS16910 -3.0 -8.5 3-phosphoglycerate dehydrogenase compare
ABI39_RS12735 -3.0 -7.3 ketol-acid reductoisomerase compare
ABI39_RS04695 -3.0 -6.7 shikimate kinase compare
ABI39_RS17945 -3.0 -14.0 glutamine synthetase III compare
ABI39_RS10195 -2.9 -9.7 2-isopropylmalate synthase compare
ABI39_RS01300 -2.9 -10.5 NADP-specific glutamate dehydrogenase compare
ABI39_RS04885 -2.9 -2.8 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS10640 -2.8 -10.9 serine dehydratase subunit alpha family protein compare
ABI39_RS12560 -2.7 -11.4 GGGtGRT protein compare
ABI39_RS04795 -2.7 -2.2 M28 family peptidase compare
ABI39_RS00770 -2.7 -13.3 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS14030 -2.7 -4.8 MFS transporter compare
ABI39_RS11875 -2.7 -7.8 OmpH family outer membrane protein compare
ABI39_RS02880 -2.6 -12.4 glutamate 5-kinase compare
ABI39_RS12770 -2.6 -4.6 hypothetical protein compare
ABI39_RS07005 -2.6 -10.4 type II 3-dehydroquinate dehydratase compare
ABI39_RS11940 -2.6 -14.3 saccharopine dehydrogenase family protein compare
ABI39_RS00515 -2.6 -3.5 hypothetical protein compare
ABI39_RS04505 -2.6 -6.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS18745 -2.6 -6.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS14560 -2.6 -3.3 aspartate 1-decarboxylase compare
ABI39_RS12665 -2.6 -6.4 shikimate dehydrogenase compare
ABI39_RS11405 -2.6 -9.2 hypothetical protein compare
ABI39_RS06250 -2.6 -10.5 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS12565 -2.5 -4.6 hypothetical protein compare
ABI39_RS04245 -2.5 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS06670 -2.5 -13.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS02755 -2.5 -2.3 glycosyltransferase compare
ABI39_RS02500 -2.4 -11.9 pyridoxine 5'-phosphate synthase compare
ABI39_RS08035 -2.4 -2.8 adenylosuccinate lyase compare
ABI39_RS12645 -2.4 -12.7 chorismate synthase compare
ABI39_RS04860 -2.3 -2.6 HigA family addiction module antidote protein compare
ABI39_RS19385 -2.3 -3.6 hypothetical protein compare
ABI39_RS04950 -2.3 -3.4 DEAD/DEAH box helicase compare
ABI39_RS17730 -2.3 -10.6 carboxynorspermidine decarboxylase compare
ABI39_RS16875 -2.3 -3.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS06675 -2.3 -5.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS02140 -2.2 -2.4 TetR/AcrR family transcriptional regulator compare
ABI39_RS19920 -2.2 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS15360 -2.2 -4.9 Na+/H+ antiporter NhaC family protein compare
ABI39_RS10500 -2.2 -5.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS09285 -2.1 -1.9 hypothetical protein compare
ABI39_RS09195 -2.1 -3.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS17140 -2.1 -2.7 AAA family ATPase compare
ABI39_RS09855 -2.1 -3.3 polyprenyl synthetase family protein compare
ABI39_RS07090 -2.1 -2.3 hypothetical protein compare
ABI39_RS21055 -2.0 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS00520 -2.0 -8.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS15415 -2.0 -5.5 hypothetical protein compare
ABI39_RS12955 -2.0 -6.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS10650 -1.9 -12.5 AraC family transcriptional regulator compare
ABI39_RS19775 -1.9 -1.7 tRNA-Met compare
ABI39_RS12725 -1.9 -3.6 acetolactate synthase small subunit compare
ABI39_RS16885 -1.8 -2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS16895 -1.8 -3.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS12945 -1.7 -5.6 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS03160 -1.7 -1.5 helix-turn-helix domain-containing protein compare
ABI39_RS14465 -1.7 -8.3 hypothetical protein compare
ABI39_RS15410 -1.6 -6.2 DUF4296 domain-containing protein compare
ABI39_RS08795 -1.6 -1.8 DUF4134 domain-containing protein compare
ABI39_RS20175 -1.6 -3.1 translation elongation factor 4 compare
ABI39_RS21350 -1.5 -2.4 aspartate--ammonia ligase compare
ABI39_RS08135 -1.5 -1.5 YicC family protein compare
ABI39_RS04145 -1.5 -1.8 transcription elongation factor GreA compare
ABI39_RS19915 -1.4 -8.1 formyltetrahydrofolate deformylase compare
ABI39_RS00410 -1.4 -2.7 response regulator compare
ABI39_RS07420 -1.4 -4.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS17150 -1.4 -3.1 hypothetical protein compare
ABI39_RS17770 -1.4 -4.9 flavodoxin family protein compare
ABI39_RS14715 -1.3 -4.6 RidA family protein compare
ABI39_RS23150 -1.3 -1.1 S26 family signal peptidase compare
ABI39_RS06060 -1.3 -4.2 S9 family peptidase compare
ABI39_RS08185 -1.3 -4.3 hemolysin III family protein compare
ABI39_RS23235 -1.3 -1.5 hypothetical protein compare
ABI39_RS09515 -1.3 -3.2 nucleoside deaminase compare
ABI39_RS11655 -1.2 -1.2 MFS transporter compare
ABI39_RS13180 -1.2 -3.0 FAD:protein FMN transferase compare
ABI39_RS04730 -1.2 -1.5 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS17320 -1.2 -1.6 YhcH/YjgK/YiaL family protein compare
ABI39_RS18990 -1.2 -3.2 plasmid recombination protein compare
ABI39_RS12670 -1.2 -3.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS16880 -1.1 -2.3 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS15265 -1.1 -1.9 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS01325 -1.1 -7.0 phosphoenolpyruvate synthase compare
ABI39_RS17160 -1.1 -1.6 VWA domain-containing protein compare
ABI39_RS09685 -1.1 -1.6 hypothetical protein compare
ABI39_RS18740 -1.1 -4.1 ATP-binding protein compare
ABI39_RS08055 -1.1 -4.6 zeta toxin family protein compare
ABI39_RS06380 -1.1 -4.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS14150 -1.1 -6.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS12805 -1.0 -1.9 hypothetical protein compare
ABI39_RS22955 -1.0 -2.5 hypothetical protein compare
ABI39_RS13225 -1.0 -1.7 phosphopyruvate hydratase compare
ABI39_RS20860 -1.0 -0.9 HU family DNA-binding protein compare
ABI39_RS04280 -1.0 -2.5 DUF4292 domain-containing protein compare
ABI39_RS15000 -1.0 -1.9 F0F1 ATP synthase subunit delta compare
ABI39_RS17175 -1.0 -2.5 tetratricopeptide repeat protein compare
ABI39_RS17170 -1.0 -1.7 protein BatD compare
ABI39_RS20405 -1.0 -2.3 GDP-L-fucose synthase compare
ABI39_RS13000 -1.0 -3.5 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS06065 -1.0 -1.6 RNA methyltransferase compare
ABI39_RS13185 -1.0 -0.9 manganese efflux pump compare
ABI39_RS21650 -1.0 -1.7 phage integrase SAM-like domain-containing protein compare
ABI39_RS09850 -1.0 -2.8 energy transducer TonB compare
ABI39_RS17745 -1.0 -1.5 sulfur carrier protein ThiS compare
ABI39_RS02985 -0.9 -2.9 arginine repressor compare
ABI39_RS11660 -0.9 -3.8 galactose mutarotase compare
ABI39_RS20355 -0.9 -5.9 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS02470 -0.9 -3.1 ATP-dependent DNA helicase RecG compare
ABI39_RS20190 -0.9 -3.3 C-GCAxxG-C-C family protein compare
ABI39_RS16695 -0.9 -4.4 carbon-nitrogen hydrolase compare
ABI39_RS02290 -0.9 -2.0 hypothetical protein compare
ABI39_RS16700 -0.9 -3.2 agmatine deiminase family protein compare
ABI39_RS02480 -0.9 -1.5 DJ-1/PfpI family protein compare
ABI39_RS15950 -0.9 -2.3 hypothetical protein compare
ABI39_RS04420 -0.9 -1.7 hypothetical protein compare
ABI39_RS17765 -0.9 -1.7 hypothetical protein compare
ABI39_RS17965 -0.9 -2.1 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS16685 -0.9 -1.6 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABI39_RS07510 -0.9 -1.5 hypothetical protein compare
ABI39_RS16315 -0.9 -0.8 conjugative transposon protein TraK compare
ABI39_RS07010 -0.9 -1.1 pyruvate kinase compare
ABI39_RS08205 -0.8 -3.3 diaminopimelate dehydrogenase compare
ABI39_RS20440 -0.8 -5.6 SLBB domain-containing protein compare
ABI39_RS02125 -0.8 -1.0 hypothetical protein compare
ABI39_RS18300 -0.8 -3.3 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS07000 -0.8 -1.8 site-specific tyrosine recombinase XerD compare
ABI39_RS11385 -0.8 -1.3 copper resistance protein NlpE N-terminal domain-containing protein compare
ABI39_RS08145 -0.8 -1.4 DUF4290 domain-containing protein compare
ABI39_RS02305 -0.8 -3.6 peptidyl-prolyl cis-trans isomerase compare
ABI39_RS17755 -0.8 -1.4 thiazole synthase compare
ABI39_RS10250 -0.8 -1.9 DNA alkylation repair protein compare
ABI39_RS19635 -0.8 -2.6 hypothetical protein compare
ABI39_RS01360 -0.8 -3.3 hypothetical protein compare
ABI39_RS12130 -0.8 -3.2 MmcQ/YjbR family DNA-binding protein compare
ABI39_RS12980 -0.8 -1.9 HAD family hydrolase compare
ABI39_RS09770 -0.8 -3.3 DUF349 domain-containing protein compare
ABI39_RS02285 -0.8 -1.6 DNA mismatch repair endonuclease MutL compare
ABI39_RS05405 -0.7 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABI39_RS22135 -0.7 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source D-Mannose across organisms