Experiment set3S366 for Bacteroides ovatus ATCC 8483

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse6; day7

Group: mouse mixed community
Media: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
Culturing: Bovatus_ATCC8483_ML6
By: Saria on 5/20/25

Specific Phenotypes

For 7 genes in this experiment

For mouse mixed community diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm in Bacteroides ovatus ATCC 8483

For mouse mixed community diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms

SEED Subsystems

Subsystem	#Specific
Cysteine Biosynthesis	1
D-Galacturonate and D-Glucuronate Utilization	1
L-rhamnose utilization	1
Pyruvate metabolism I: anaplerotic reactions, PEP	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Selenoamino acid metabolism
• Pyruvate metabolism
• Carbon fixation in photosynthetic organisms
• Sulfur metabolism
• Biosynthesis of terpenoids and steroids
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of alkaloids derived from terpenoid and polyketide

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
sulfate activation for sulfonation	2	2	1
sulfite oxidation III	3	1	1
assimilatory sulfate reduction III	3	1	1
assimilatory sulfate reduction II	3	1	1
C4 photosynthetic carbon assimilation cycle, NADP-ME type	7	4	2
assimilatory sulfate reduction I	4	2	1
assimilatory sulfate reduction IV	4	2	1
selenate reduction	5	2	1
dissimilatory sulfate reduction I (to hydrogen sufide))	5	1	1
methylgallate degradation	6	2	1
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens)	6	1	1
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans)	6	1	1
C4 photosynthetic carbon assimilation cycle, PEPCK type	14	7	2
protocatechuate degradation I (meta-cleavage pathway)	8	3	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	7	1
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae)	10	5	1
superpathway of vanillin and vanillate degradation	10	3	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	9	1
syringate degradation	12	3	1
superpathway of sulfide oxidation (phototrophic sulfur bacteria)	12	2	1
gluconeogenesis I	13	11	1
superpathway of seleno-compound metabolism	19	5	1